Wall clock time and date at job start Mon Mar 30 2020 07:29:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13598 * 1
3 3 C 1.43203 * 179.97438 * 2 1
4 4 C 1.39828 * 120.54762 * 96.17786 * 3 2 1
5 5 C 1.36925 * 120.56700 * 179.71454 * 4 3 2
6 6 C 1.41669 * 121.88508 * 0.25961 * 5 4 3
7 7 C 1.45229 * 128.52472 * 179.97438 * 6 5 4
8 8 C 1.33027 * 114.80236 * 180.02562 * 7 6 5
9 9 S 1.76199 * 124.40423 * 179.97438 * 8 7 6
10 10 S 1.75290 * 111.19539 * 359.97438 * 8 7 6
11 11 C 1.39585 * 119.65223 * 359.97438 * 6 5 4
12 12 C 1.42042 * 119.86153 * 0.02562 * 11 6 5
13 13 C 1.40338 * 120.43423 * 180.02562 * 12 11 6
14 14 H 1.07995 * 120.00047 * 218.78591 * 13 12 11
15 15 C 1.40273 * 120.00189 * 38.78395 * 13 12 11
16 16 N 1.30671 * 119.99940 * 20.96703 * 15 13 12
17 17 Si 1.86796 * 119.99982 * 200.95962 * 15 13 12
18 18 H 1.48500 * 109.47235 * 90.00538 * 17 15 13
19 19 H 1.48505 * 109.47401 * 210.00096 * 17 15 13
20 20 H 1.48496 * 109.47390 * 330.00170 * 17 15 13
21 21 H 1.07996 * 119.71436 * 359.97438 * 4 3 2
22 22 H 1.07996 * 119.05732 * 180.23453 * 5 4 3
23 23 H 1.08002 * 122.60146 * 0.04205 * 7 6 5
24 24 H 1.34499 * 102.99749 * 90.00527 * 9 8 7
25 25 H 0.97004 * 120.00023 * 182.02282 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.5680 0.0006 0.0000
4 6 3.2786 0.1305 -1.1972
5 6 4.6479 0.1371 -1.1970
6 6 5.3967 0.0088 -0.0013
7 6 6.8393 -0.0033 0.1657
8 6 7.2544 -0.1403 1.4221
9 16 8.9463 -0.1875 1.9120
10 16 5.8996 -0.2676 2.5270
11 6 4.7319 -0.1284 1.2184
12 6 3.3120 -0.1389 1.2527
13 6 2.6313 -0.2755 2.4724
14 1 1.7347 -0.8751 2.5262
15 6 3.1156 0.3666 3.6217
16 7 3.9203 1.3898 3.5083
17 14 2.6100 -0.2410 5.3141
18 1 3.5775 -1.2662 5.7814
19 1 2.5982 0.8987 6.2662
20 1 1.2526 -0.8386 5.2405
21 1 2.7429 0.2308 -2.1295
22 1 5.1720 0.2426 -2.1354
23 1 7.5221 0.0918 -0.6656
24 1 9.2315 1.1070 2.1400
25 1 4.2785 1.8155 4.3029
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000396210554.mol2 25
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:29:56
Heat of formation + Delta-G solvation = 56.788220 kcal
Electronic energy + Delta-G solvation = -14181.971741 eV
Core-core repulsion = 11763.504572 eV
Total energy + Delta-G solvation = -2418.467169 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 260.998 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-38.20506 -35.64974 -34.65620 -33.41166 -30.30307 -28.67191 -25.93268 -23.39368
-21.76169 -20.32762 -18.49445 -17.43251 -17.17253 -15.72042 -15.41381 -14.78923
-14.38909 -13.54825 -13.12089 -13.09471 -12.97406 -12.40190 -12.04289 -11.98519
-11.67906 -11.50323 -11.33491 -10.99853 -10.79408 -10.71971 -10.27216 -9.89878
-9.74040 -9.31531 -8.57475 -7.91983 -7.58851 -7.43269 -6.57293 -4.94226
1.10076 1.81245 2.36403 2.44785 2.61884 2.88025 2.91798 2.95490
3.07276 3.22389 3.63652 3.87052 4.02369 4.28380 5.09231 5.29872
5.63200 5.79885 6.12764 6.24144 6.30808 6.57883 6.72754 6.83713
7.09100 7.23713 7.47966 7.63982 7.91442 8.14002 8.28446 8.73452
9.59841
Molecular weight = 261.00amu
Principal moments of inertia in cm(-1)
A = 0.016831 B = 0.010316 C = 0.006615
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1663.185761 B = 2713.696541 C = 4232.018760
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.503 5.503
2 C 0.303 3.697
3 C -0.172 4.172
4 C -0.024 4.024
5 C -0.204 4.204
6 C -0.038 4.038
7 C -0.066 4.066
8 C -0.228 4.228
9 S -0.081 6.081
10 S 0.165 5.835
11 C -0.157 4.157
12 C 0.191 3.809
13 C -0.442 4.442
14 H 0.096 0.904
15 C 0.071 3.929
16 N -0.744 5.744
17 Si 0.905 3.095
18 H -0.256 1.256
19 H -0.270 1.270
20 H -0.255 1.255
21 H 0.107 0.893
22 H 0.105 0.895
23 H 0.136 0.864
24 H 0.065 0.935
25 H 0.297 0.703
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.099 -1.245 -0.205 8.196
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.182 5.182
2 C -0.007 4.007
3 C -0.182 4.182
4 C -0.046 4.046
5 C -0.226 4.226
6 C -0.048 4.048
7 C -0.103 4.103
8 C -0.456 4.456
9 S 0.074 5.926
10 S 0.433 5.567
11 C -0.275 4.275
12 C 0.182 3.818
13 C -0.470 4.470
14 H 0.114 0.886
15 C -0.153 4.153
16 N -0.366 5.366
17 Si 0.727 3.273
18 H -0.180 1.180
19 H -0.195 1.195
20 H -0.178 1.178
21 H 0.125 0.875
22 H 0.123 0.877
23 H 0.153 0.847
24 H 0.029 0.971
25 H 0.108 0.892
Dipole moment (debyes) X Y Z Total
from point charges 7.306 -1.459 1.817 7.668
hybrid contribution -0.400 1.231 -0.904 1.578
sum 6.906 -0.228 0.914 6.970
Atomic orbital electron populations
1.81031 1.12589 1.14742 1.09830 1.25545 0.92449 0.91311 0.91407
1.16716 0.83419 1.23806 0.94225 1.20256 0.93364 0.95767 0.95244
1.19901 0.92698 1.15014 0.95022 1.19023 0.90729 1.01347 0.93749
1.21452 0.94368 0.98869 0.95639 1.25165 1.00218 1.18767 1.01408
1.85428 1.05928 1.12248 1.89021 1.84043 0.90860 1.73802 1.07962
1.22741 0.97092 1.12947 0.94749 1.17631 0.87645 0.85395 0.91116
1.19640 1.10279 1.25042 0.92004 0.88641 1.26060 0.93713 0.93232
1.02322 1.69690 1.20597 1.12176 1.34184 0.86261 0.81188 0.80071
0.79767 1.17991 1.19508 1.17849 0.87485 0.87685 0.84655 0.97120
0.89161
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.50 -11.86 18.54 41.84 0.78 -11.09 15
2 C 0.30 6.93 14.48 -22.47 -0.33 6.60 15
3 C -0.17 -3.83 5.95 -104.11 -0.62 -4.45 15
4 C -0.02 -0.47 9.70 -39.46 -0.38 -0.85 15
5 C -0.20 -3.85 10.01 -38.75 -0.39 -4.24 15
6 C -0.04 -0.77 6.02 -105.31 -0.63 -1.40 15
7 C -0.07 -1.19 10.29 -38.62 -0.40 -1.58 15
8 C -0.23 -4.15 6.65 28.92 0.19 -3.96 15
9 S -0.08 -1.22 26.13 -107.50 -2.81 -4.03 15
10 S 0.17 3.38 19.82 -107.50 -2.13 1.25 15
11 C -0.16 -3.51 5.75 -37.62 -0.22 -3.72 15
12 C 0.19 4.50 5.53 -104.38 -0.58 3.92 15
13 C -0.44 -10.52 8.22 -38.03 -0.31 -10.84 15
14 H 0.10 2.29 7.74 -52.49 -0.41 1.88 15
15 C 0.07 1.59 4.26 -17.28 -0.07 1.51 15
16 N -0.74 -16.84 10.68 55.57 0.59 -16.25 15
17 Si 0.90 17.05 29.61 -169.99 -5.03 12.01 15
18 H -0.26 -4.69 7.11 56.52 0.40 -4.29 15
19 H -0.27 -4.95 7.11 56.52 0.40 -4.55 15
20 H -0.26 -4.88 7.11 56.52 0.40 -4.48 15
21 H 0.11 1.78 8.06 -52.49 -0.42 1.36 15
22 H 0.11 1.67 8.06 -52.49 -0.42 1.25 15
23 H 0.14 2.05 8.06 -52.49 -0.42 1.63 15
24 H 0.06 0.91 9.07 97.61 0.89 1.80 15
25 H 0.30 6.09 8.29 -40.82 -0.34 5.75 15
LS Contribution 262.25 15.07 3.95 3.95
Total: -1.00 -24.50 262.25 -8.31 -32.81
By element:
Atomic # 1 Polarization: 0.27 SS G_CDS: 0.08 Total: 0.35 kcal
Atomic # 6 Polarization: -15.28 SS G_CDS: -3.73 Total: -19.01 kcal
Atomic # 7 Polarization: -28.70 SS G_CDS: 1.37 Total: -27.33 kcal
Atomic # 14 Polarization: 17.05 SS G_CDS: -5.03 Total: 12.01 kcal
Atomic # 16 Polarization: 2.16 SS G_CDS: -4.94 Total: -2.78 kcal
Total LS contribution 3.95 Total: 3.95 kcal
Total: -24.50 -8.31 -32.81 kcal
The number of atoms in the molecule is 25
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000396210554.mol2 25
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 89.600 kcal
(2) G-P(sol) polarization free energy of solvation -24.501 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.099 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.311 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.812 kcal
(6) G-S(sol) free energy of system = (1) + (5) 56.788 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds