Wall clock time and date at job start Mon Mar 30 2020 07:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39828 * 120.54762 * 96.17786 * 3 2 1 5 5 C 1.36925 * 120.56700 * 179.71454 * 4 3 2 6 6 C 1.41669 * 121.88508 * 0.25961 * 5 4 3 7 7 C 1.45229 * 128.52472 * 179.97438 * 6 5 4 8 8 C 1.33027 * 114.80236 * 180.02562 * 7 6 5 9 9 S 1.76199 * 124.40423 * 179.97438 * 8 7 6 10 10 S 1.75290 * 111.19539 * 359.97438 * 8 7 6 11 11 C 1.39585 * 119.65223 * 359.97438 * 6 5 4 12 12 C 1.42042 * 119.86153 * 0.02562 * 11 6 5 13 13 C 1.40338 * 120.43423 * 180.02562 * 12 11 6 14 14 H 1.07995 * 120.00047 * 218.78591 * 13 12 11 15 15 C 1.40273 * 120.00189 * 38.78395 * 13 12 11 16 16 N 1.30671 * 119.99940 * 20.96703 * 15 13 12 17 17 Si 1.86796 * 119.99982 * 200.95962 * 15 13 12 18 18 H 1.48500 * 109.47235 * 90.00538 * 17 15 13 19 19 H 1.48505 * 109.47401 * 210.00096 * 17 15 13 20 20 H 1.48496 * 109.47390 * 330.00170 * 17 15 13 21 21 H 1.07996 * 119.71436 * 359.97438 * 4 3 2 22 22 H 1.07996 * 119.05732 * 180.23453 * 5 4 3 23 23 H 1.08002 * 122.60146 * 0.04205 * 7 6 5 24 24 H 1.34499 * 102.99749 * 90.00527 * 9 8 7 25 25 H 0.97004 * 120.00023 * 182.02282 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2786 0.1305 -1.1972 5 6 4.6479 0.1371 -1.1970 6 6 5.3967 0.0088 -0.0013 7 6 6.8393 -0.0033 0.1657 8 6 7.2544 -0.1403 1.4221 9 16 8.9463 -0.1875 1.9120 10 16 5.8996 -0.2676 2.5270 11 6 4.7319 -0.1284 1.2184 12 6 3.3120 -0.1389 1.2527 13 6 2.6313 -0.2755 2.4724 14 1 1.7347 -0.8751 2.5262 15 6 3.1156 0.3666 3.6217 16 7 3.9203 1.3898 3.5083 17 14 2.6100 -0.2410 5.3141 18 1 3.5775 -1.2662 5.7814 19 1 2.5982 0.8987 6.2662 20 1 1.2526 -0.8386 5.2405 21 1 2.7429 0.2308 -2.1295 22 1 5.1720 0.2426 -2.1354 23 1 7.5221 0.0918 -0.6656 24 1 9.2315 1.1070 2.1400 25 1 4.2785 1.8155 4.3029 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396210554.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:29:54 Heat of formation + Delta-G solvation = 46.036522 kcal Electronic energy + Delta-G solvation = -14182.437970 eV Core-core repulsion = 11763.504572 eV Total energy + Delta-G solvation = -2418.933398 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.78342 -37.36587 -36.32034 -34.99034 -31.93346 -30.23470 -27.59255 -24.94397 -23.37281 -21.81360 -20.09406 -19.02886 -18.55507 -17.29848 -16.91642 -16.31589 -15.90448 -15.06284 -14.72198 -14.66959 -14.60972 -14.01984 -13.63421 -13.56168 -13.36557 -13.17144 -12.87929 -12.51159 -12.31873 -12.21698 -11.83312 -11.42950 -11.23168 -10.89450 -10.16036 -9.18294 -9.11998 -9.06525 -8.16017 -6.66424 -0.40991 0.45327 0.82393 0.95228 1.11280 1.32666 1.42660 1.46264 1.56048 1.90202 2.07048 2.09379 2.37594 2.57978 3.41162 3.58744 4.16803 4.37235 4.63642 4.73368 4.88490 4.94786 5.15536 5.25874 5.52211 5.64721 5.87876 6.05224 6.21523 6.47694 6.60146 6.94390 7.98545 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.016831 B = 0.010316 C = 0.006615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.185761 B = 2713.696541 C = 4232.018760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C 0.309 3.691 3 C -0.193 4.193 4 C -0.026 4.026 5 C -0.190 4.190 6 C -0.048 4.048 7 C -0.062 4.062 8 C -0.229 4.229 9 S -0.049 6.049 10 S 0.133 5.867 11 C -0.185 4.185 12 C 0.169 3.831 13 C -0.477 4.477 14 H 0.078 0.922 15 C 0.047 3.953 16 N -0.767 5.767 17 Si 0.954 3.046 18 H -0.247 1.247 19 H -0.259 1.259 20 H -0.265 1.265 21 H 0.137 0.863 22 H 0.145 0.855 23 H 0.172 0.828 24 H 0.075 0.925 25 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.214 -1.074 -1.092 10.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.205 5.205 2 C 0.000 4.000 3 C -0.202 4.202 4 C -0.048 4.048 5 C -0.211 4.211 6 C -0.060 4.060 7 C -0.098 4.098 8 C -0.457 4.457 9 S 0.106 5.894 10 S 0.401 5.599 11 C -0.303 4.303 12 C 0.160 3.840 13 C -0.504 4.504 14 H 0.096 0.904 15 C -0.175 4.175 16 N -0.390 5.390 17 Si 0.774 3.226 18 H -0.171 1.171 19 H -0.183 1.183 20 H -0.189 1.189 21 H 0.155 0.845 22 H 0.163 0.837 23 H 0.189 0.811 24 H 0.039 0.961 25 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 9.428 -1.284 0.912 9.559 hybrid contribution -0.921 1.188 -0.745 1.677 sum 8.508 -0.096 0.167 8.510 Atomic orbital electron populations 1.81007 1.13128 1.15825 1.10581 1.25790 0.92711 0.90762 0.90772 1.17033 0.83115 1.24820 0.95278 1.20598 0.93914 0.94980 0.95337 1.20381 0.92537 1.12140 0.96078 1.19515 0.92201 1.00637 0.93606 1.21743 0.93608 0.97838 0.96624 1.25398 1.01403 1.17959 1.00936 1.85333 1.02510 1.12891 1.88714 1.84012 0.92168 1.74625 1.09143 1.22912 0.96942 1.14244 0.96215 1.17922 0.88737 0.85795 0.91505 1.19654 1.10594 1.26694 0.93486 0.90443 1.26545 0.93596 0.92962 1.04426 1.69692 1.21386 1.12711 1.35180 0.85549 0.80365 0.80033 0.76641 1.17097 1.18291 1.18860 0.84488 0.83739 0.81076 0.96072 0.88498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -25.23 18.54 19.00 0.35 -24.88 15 2 C 0.31 14.36 14.48 88.33 1.28 15.64 15 3 C -0.19 -8.63 5.95 -19.53 -0.12 -8.74 15 4 C -0.03 -0.97 9.70 22.35 0.22 -0.76 15 5 C -0.19 -6.57 10.01 22.81 0.23 -6.34 15 6 C -0.05 -1.87 6.02 -20.31 -0.12 -2.00 15 7 C -0.06 -2.04 10.29 22.90 0.24 -1.80 15 8 C -0.23 -7.83 6.65 66.66 0.44 -7.39 15 9 S -0.05 -1.32 26.13 -56.49 -1.48 -2.80 15 10 S 0.13 5.40 19.82 -56.49 -1.12 4.28 15 11 C -0.18 -8.25 5.75 23.54 0.14 -8.12 15 12 C 0.17 8.13 5.53 -19.71 -0.11 8.02 15 13 C -0.48 -23.58 8.22 23.28 0.19 -23.39 15 14 H 0.08 3.95 7.74 -2.91 -0.02 3.92 15 15 C 0.05 2.15 4.26 85.36 0.36 2.51 15 16 N -0.77 -35.25 10.68 21.88 0.23 -35.01 15 17 Si 0.95 35.46 29.61 68.60 2.03 37.49 15 18 H -0.25 -8.75 7.11 99.48 0.71 -8.05 15 19 H -0.26 -9.04 7.11 99.48 0.71 -8.33 15 20 H -0.26 -10.11 7.11 99.48 0.71 -9.40 15 21 H 0.14 4.16 8.06 -2.91 -0.02 4.14 15 22 H 0.14 3.85 8.06 -2.91 -0.02 3.82 15 23 H 0.17 4.34 8.06 -2.91 -0.02 4.32 15 24 H 0.08 1.87 9.07 73.35 0.67 2.54 15 25 H 0.30 12.58 8.29 -92.71 -0.77 11.81 15 Total: -1.00 -53.19 262.25 4.69 -48.50 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: 1.92 Total: 4.78 kcal Atomic # 6 Polarization: -35.11 SS G_CDS: 2.75 Total: -32.36 kcal Atomic # 7 Polarization: -60.48 SS G_CDS: 0.59 Total: -59.90 kcal Atomic # 14 Polarization: 35.46 SS G_CDS: 2.03 Total: 37.49 kcal Atomic # 16 Polarization: 4.08 SS G_CDS: -2.60 Total: 1.48 kcal Total: -53.19 4.69 -48.50 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396210554.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.539 kcal (2) G-P(sol) polarization free energy of solvation -53.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds