Wall clock time and date at job start Mon Mar 30 2020 07:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.40638 * 120.30086 * 83.27784 * 3 2 1 5 5 S 1.76203 * 129.76050 * 359.94935 * 4 3 2 6 6 C 1.75427 * 91.55063 * 180.27920 * 5 4 3 7 7 C 1.32194 * 110.85715 * 0.02562 * 6 5 4 8 8 C 1.40109 * 120.80465 * 180.25699 * 4 3 2 9 9 C 1.41632 * 120.18113 * 359.76429 * 8 4 3 10 10 C 1.37109 * 121.90488 * 0.02562 * 9 8 4 11 11 S 1.76200 * 120.22261 * 179.97438 * 10 9 8 12 12 C 1.46328 * 120.29789 * 263.08115 * 3 2 1 13 13 C 1.39985 * 120.92736 * 359.97438 * 12 3 2 14 14 H 1.07995 * 120.00551 * 137.78690 * 13 12 3 15 15 C 1.40323 * 119.99399 * 317.78584 * 13 12 3 16 16 N 1.30668 * 120.00096 * 338.41278 * 15 13 12 17 17 Si 1.86793 * 119.99811 * 158.41539 * 15 13 12 18 18 H 1.48498 * 109.47307 * 89.99824 * 17 15 13 19 19 H 1.48496 * 109.47217 * 210.00021 * 17 15 13 20 20 H 1.48503 * 109.47387 * 329.99970 * 17 15 13 21 21 H 1.08002 * 124.57232 * 179.97438 * 6 5 4 22 22 H 1.08001 * 122.01410 * 180.02562 * 7 6 5 23 23 H 1.08000 * 119.04691 * 180.02562 * 9 8 4 24 24 H 1.34497 * 102.99526 * 90.00245 * 11 10 9 25 25 H 0.96996 * 119.99736 * 185.44030 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2777 -0.1412 -1.2059 5 16 2.6769 -0.3365 -2.8508 6 6 4.3092 -0.4186 -3.4881 7 6 5.1997 -0.3057 -2.5176 8 6 4.6787 -0.1474 -1.2175 9 6 5.4014 -0.0050 -0.0078 10 6 4.7702 0.1413 1.2005 11 16 5.7134 0.3145 2.6787 12 6 3.3062 0.1532 1.2542 13 6 2.6323 0.3012 2.4722 14 1 2.9794 -0.2252 3.3490 15 6 1.5056 1.1336 2.5539 16 7 1.3234 2.0754 1.6666 17 14 0.2663 0.8955 3.9310 18 1 0.6569 1.7269 5.0978 19 1 -1.0814 1.3049 3.4605 20 1 0.2380 -0.5348 4.3297 21 1 4.5538 -0.5451 -4.5324 22 1 6.2622 -0.3320 -2.7095 23 1 6.4810 -0.0119 -0.0380 24 1 5.8797 1.6455 2.7772 25 1 0.5887 2.7007 1.7670 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396210870.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:10 Heat of formation + Delta-G solvation = 48.974376 kcal Electronic energy + Delta-G solvation = -14313.064623 eV Core-core repulsion = 11894.258620 eV Total energy + Delta-G solvation = -2418.806003 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.84798 -37.54330 -36.13970 -34.75014 -31.84010 -30.89549 -27.29464 -24.76400 -23.83797 -21.66750 -20.08956 -18.99419 -18.09109 -17.61863 -16.93327 -16.50806 -15.57343 -15.45454 -14.82889 -14.72176 -14.22853 -13.75127 -13.73893 -13.54296 -13.37819 -13.18748 -13.00804 -12.70372 -12.36127 -12.05090 -11.87789 -11.38142 -11.28999 -10.96268 -10.25874 -9.25471 -9.01304 -8.74284 -8.54646 -6.69071 0.07865 0.16031 0.74680 1.03168 1.19006 1.29124 1.32932 1.40543 1.53719 1.99953 2.06923 2.18725 2.47989 2.61245 3.30023 3.60662 4.22868 4.38478 4.54777 4.74654 4.88189 4.90244 5.09152 5.17006 5.49667 5.54802 5.76091 5.87409 6.15657 6.41134 6.49305 7.03980 7.86863 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.019298 B = 0.009871 C = 0.006785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.573426 B = 2835.956967 C = 4125.693960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C 0.320 3.680 3 C -0.164 4.164 4 C -0.029 4.029 5 S 0.002 5.998 6 C -0.237 4.237 7 C -0.075 4.075 8 C -0.214 4.214 9 C 0.039 3.961 10 C -0.205 4.205 11 S -0.103 6.103 12 C 0.180 3.820 13 C -0.435 4.435 14 H 0.123 0.877 15 C 0.048 3.952 16 N -0.776 5.776 17 Si 0.956 3.044 18 H -0.239 1.239 19 H -0.283 1.283 20 H -0.247 1.247 21 H 0.191 0.809 22 H 0.171 0.829 23 H 0.154 0.846 24 H 0.054 0.946 25 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.346 -1.910 -2.380 8.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.208 5.208 2 C 0.011 3.989 3 C -0.179 4.179 4 C -0.148 4.148 5 S 0.262 5.738 6 C -0.370 4.370 7 C -0.103 4.103 8 C -0.223 4.223 9 C 0.016 3.984 10 C -0.318 4.318 11 S 0.055 5.945 12 C 0.169 3.831 13 C -0.461 4.461 14 H 0.140 0.860 15 C -0.176 4.176 16 N -0.397 5.397 17 Si 0.776 3.224 18 H -0.162 1.162 19 H -0.209 1.209 20 H -0.170 1.170 21 H 0.208 0.792 22 H 0.188 0.812 23 H 0.171 0.829 24 H 0.019 0.981 25 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.579 -1.955 -2.440 6.396 hybrid contribution 0.175 1.361 0.199 1.387 sum 5.754 -0.594 -2.242 6.203 Atomic orbital electron populations 1.80887 1.13209 1.15842 1.10847 1.25536 0.92718 0.90106 0.90572 1.16301 0.83180 1.25266 0.93123 1.22678 0.97147 0.99961 0.94974 1.84243 1.11496 1.79424 0.98596 1.24997 0.92693 1.15155 1.04116 1.20106 1.01763 0.99031 0.89422 1.18091 0.90304 1.18654 0.95229 1.21408 0.99783 0.88379 0.88826 1.22091 0.94081 1.19913 0.95756 1.84941 1.67048 1.09658 1.32847 1.19672 0.89919 0.83272 0.90226 1.20007 1.07002 1.21723 0.97406 0.85984 1.26818 0.98049 0.93391 0.99294 1.69655 1.27410 1.09850 1.32774 0.85512 0.76783 0.81475 0.78626 1.16230 1.20865 1.17021 0.79226 0.81161 0.82871 0.98147 0.89229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -27.88 18.50 19.00 0.35 -27.53 15 2 C 0.32 16.52 11.43 88.33 1.01 17.53 15 3 C -0.16 -7.99 5.65 -19.34 -0.11 -8.10 15 4 C -0.03 -1.27 6.33 23.31 0.15 -1.12 15 5 S 0.00 0.07 22.95 -56.49 -1.30 -1.23 15 6 C -0.24 -6.86 11.08 66.80 0.74 -6.12 15 7 C -0.07 -2.18 10.10 21.91 0.22 -1.96 15 8 C -0.21 -7.95 5.86 -21.32 -0.12 -8.07 15 9 C 0.04 1.38 9.68 22.84 0.22 1.61 15 10 C -0.20 -8.26 6.29 24.16 0.15 -8.11 15 11 S -0.10 -3.56 24.83 -56.49 -1.40 -4.96 15 12 C 0.18 8.49 5.58 -18.60 -0.10 8.38 15 13 C -0.43 -20.37 7.96 23.20 0.18 -20.19 15 14 H 0.12 5.36 7.72 -2.91 -0.02 5.34 15 15 C 0.05 2.24 4.08 85.37 0.35 2.59 15 16 N -0.78 -38.68 11.25 21.89 0.25 -38.44 15 17 Si 0.96 37.24 29.62 68.60 2.03 39.27 15 18 H -0.24 -8.37 7.11 99.48 0.71 -7.66 15 19 H -0.28 -11.61 7.11 99.48 0.71 -10.91 15 20 H -0.25 -9.41 7.11 99.48 0.71 -8.71 15 21 H 0.19 3.99 8.06 -2.91 -0.02 3.97 15 22 H 0.17 3.55 8.06 -2.91 -0.02 3.53 15 23 H 0.15 4.20 8.06 -2.91 -0.02 4.18 15 24 H 0.05 1.86 9.07 73.35 0.67 2.53 15 25 H 0.30 13.98 8.30 -92.71 -0.77 13.22 15 Total: -1.00 -55.50 261.78 4.54 -50.96 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: 1.92 Total: 5.49 kcal Atomic # 6 Polarization: -26.25 SS G_CDS: 2.69 Total: -23.56 kcal Atomic # 7 Polarization: -66.56 SS G_CDS: 0.60 Total: -65.97 kcal Atomic # 14 Polarization: 37.24 SS G_CDS: 2.03 Total: 39.27 kcal Atomic # 16 Polarization: -3.49 SS G_CDS: -2.70 Total: -6.19 kcal Total: -55.50 4.54 -50.96 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396210870.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.935 kcal (2) G-P(sol) polarization free energy of solvation -55.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds