Wall clock time and date at job start Mon Mar 30 2020 07:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.38782 * 120.48517 * 159.01099 * 3 2 1 5 5 C 1.39631 * 120.75628 * 180.24272 * 4 3 2 6 6 S 1.76141 * 129.52206 * 179.73455 * 5 4 3 7 7 C 1.75209 * 92.32504 * 180.02562 * 6 5 4 8 8 S 1.76197 * 124.29935 * 180.02562 * 7 6 5 9 9 C 1.32966 * 111.40377 * 359.97438 * 7 6 5 10 10 C 1.40513 * 120.79146 * 359.78066 * 5 4 3 11 11 C 1.40655 * 119.89814 * 359.96139 * 10 5 4 12 12 C 1.39801 * 120.45589 * 0.02562 * 11 10 5 13 13 C 1.40735 * 120.46425 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00196 * 154.27820 * 13 12 11 15 15 C 1.40116 * 119.99752 * 334.26931 * 13 12 11 16 16 N 1.30757 * 120.00300 * 334.52423 * 15 13 12 17 17 Si 1.86799 * 119.99676 * 154.51921 * 15 13 12 18 18 H 1.48502 * 109.46966 * 179.97438 * 17 15 13 19 19 H 1.48495 * 109.47354 * 300.00308 * 17 15 13 20 20 H 1.48502 * 109.47041 * 60.00280 * 17 15 13 21 21 H 1.07997 * 119.62041 * 0.02562 * 4 3 2 22 22 H 1.41003 * 99.99743 * 359.97307 * 8 7 6 23 23 H 1.07993 * 122.60735 * 180.02562 * 9 7 6 24 24 H 1.07999 * 119.76627 * 180.02562 * 11 10 5 25 25 H 0.96994 * 119.99603 * 354.23832 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2715 1.1176 -0.4284 5 6 4.6677 1.1225 -0.4355 6 16 5.7816 2.3939 -0.9310 7 6 7.1827 1.4106 -0.5570 8 16 8.8507 1.9382 -0.7669 9 6 6.8274 0.2160 -0.0936 10 6 5.3933 -0.0011 -0.0049 11 6 4.7110 -1.1476 0.4405 12 6 3.3135 -1.1786 0.4580 13 6 2.6307 -2.3255 0.9042 14 1 1.6334 -2.2369 1.3090 15 6 3.2448 -3.5823 0.8230 16 7 4.1761 -3.7985 -0.0689 17 14 2.7330 -4.9489 1.9891 18 1 3.5269 -6.1700 1.6995 19 1 2.9756 -4.5208 3.3902 20 1 1.2890 -5.2425 1.8042 21 1 2.7328 1.9916 -0.7634 22 1 8.6349 3.2383 -1.2683 23 1 7.5486 -0.5347 0.1939 24 1 5.2708 -2.0100 0.7714 25 1 4.3837 -3.1180 -0.7281 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396210887.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:26 Heat of formation + Delta-G solvation = 51.824567 kcal Electronic energy + Delta-G solvation = -13891.250061 eV Core-core repulsion = 11472.567652 eV Total energy + Delta-G solvation = -2418.682409 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.45403 -35.88294 -35.04615 -33.39026 -29.82896 -29.09457 -25.86984 -23.48425 -21.99527 -20.80763 -18.51904 -17.98760 -17.06470 -16.24853 -15.06716 -14.66935 -14.24478 -13.59037 -13.44281 -13.29209 -12.87781 -12.64652 -12.54901 -12.06179 -11.81745 -11.61205 -11.39032 -10.90549 -10.73514 -10.57835 -10.42321 -10.31389 -9.86920 -9.46794 -8.85001 -8.52123 -7.72554 -7.40180 -7.11741 -4.88859 1.09397 1.46484 1.74351 2.27082 2.53570 2.59274 2.63095 2.99452 3.05927 3.19780 3.62332 3.73797 3.89103 4.24997 5.01151 5.05185 5.47403 5.65823 5.95404 6.10931 6.34444 6.47925 6.77530 6.86807 7.04634 7.17570 7.31814 7.56624 7.63693 8.12412 8.28400 8.49226 9.57928 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.022079 B = 0.006594 C = 0.005178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.876687 B = 4245.263368 C = 5406.276316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C 0.296 3.704 3 C -0.140 4.140 4 C 0.017 3.983 5 C -0.245 4.245 6 S 0.020 5.980 7 C -0.164 4.164 8 S -0.078 6.078 9 C -0.080 4.080 10 C -0.003 4.003 11 C -0.188 4.188 12 C 0.125 3.875 13 C -0.473 4.473 14 H 0.087 0.913 15 C 0.038 3.962 16 N -0.760 5.760 17 Si 1.066 2.934 18 H -0.268 1.268 19 H -0.268 1.268 20 H -0.271 1.271 21 H 0.107 0.893 22 H 0.101 0.899 23 H 0.141 0.859 24 H 0.122 0.878 25 H 0.307 0.693 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.210 4.410 0.073 8.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.165 5.165 2 C -0.015 4.015 3 C -0.147 4.147 4 C -0.009 4.009 5 C -0.361 4.361 6 S 0.275 5.725 7 C -0.391 4.391 8 S 0.084 5.916 9 C -0.119 4.119 10 C -0.011 4.011 11 C -0.211 4.211 12 C 0.119 3.881 13 C -0.500 4.500 14 H 0.105 0.895 15 C -0.189 4.189 16 N -0.381 5.381 17 Si 0.887 3.113 18 H -0.192 1.192 19 H -0.193 1.193 20 H -0.196 1.196 21 H 0.125 0.875 22 H 0.064 0.936 23 H 0.159 0.841 24 H 0.140 0.860 25 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 6.760 4.409 -0.161 8.072 hybrid contribution -0.832 0.940 -0.239 1.278 sum 5.928 5.350 -0.400 7.995 Atomic orbital electron populations 1.81056 1.12430 1.10068 1.12926 1.25550 0.92476 0.91687 0.91821 1.16738 0.83476 0.98429 1.16106 1.19848 0.90580 0.95582 0.94853 1.21334 0.95780 0.97778 1.21192 1.83543 0.94843 1.18917 1.75174 1.24623 0.98620 1.02525 1.13307 1.86629 1.01756 1.19601 1.83635 1.20908 0.95148 0.95348 1.00529 1.18893 0.90053 0.93942 0.98172 1.20896 0.93045 0.97312 1.09868 1.18122 0.90879 0.90692 0.88414 1.20777 1.03692 0.92603 1.32925 0.89461 1.27324 0.92293 1.01187 0.98057 1.70452 1.20752 1.38281 1.08564 0.83602 0.77453 0.74643 0.75577 1.19240 1.19315 1.19645 0.87464 0.93556 0.84101 0.86025 0.87907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -11.14 18.54 41.83 0.78 -10.37 15 2 C 0.30 6.58 14.30 -22.48 -0.32 6.26 15 3 C -0.14 -3.06 5.93 -104.29 -0.62 -3.68 15 4 C 0.02 0.33 9.75 -38.86 -0.38 -0.05 15 5 C -0.25 -4.86 6.45 -38.21 -0.25 -5.11 15 6 S 0.02 0.33 23.21 -107.50 -2.50 -2.16 15 7 C -0.16 -2.70 6.64 28.91 0.19 -2.51 15 8 S -0.08 -1.04 26.15 -107.50 -2.81 -3.85 15 9 C -0.08 -1.43 10.28 -38.59 -0.40 -1.83 15 10 C 0.00 -0.05 6.00 -105.31 -0.63 -0.68 15 11 C -0.19 -4.10 8.00 -38.09 -0.30 -4.41 15 12 C 0.13 2.87 5.44 -104.89 -0.57 2.30 15 13 C -0.47 -11.01 8.48 -37.93 -0.32 -11.34 15 14 H 0.09 2.06 7.46 -52.49 -0.39 1.67 15 15 C 0.04 0.83 4.93 -17.30 -0.09 0.75 15 16 N -0.76 -17.42 12.32 55.56 0.68 -16.73 15 17 Si 1.07 19.03 30.00 -169.99 -5.10 13.93 15 18 H -0.27 -4.74 7.11 56.52 0.40 -4.34 15 19 H -0.27 -4.61 7.11 56.52 0.40 -4.21 15 20 H -0.27 -4.74 7.11 56.52 0.40 -4.34 15 21 H 0.11 1.90 8.06 -52.49 -0.42 1.47 15 22 H 0.10 1.16 9.55 96.90 0.93 2.08 15 23 H 0.14 2.25 8.06 -52.49 -0.42 1.83 15 24 H 0.12 2.68 6.47 -52.49 -0.34 2.34 15 25 H 0.31 7.16 6.70 -40.82 -0.27 6.89 15 LS Contribution 264.03 15.07 3.98 3.98 Total: -1.00 -23.73 264.03 -8.37 -32.10 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: 0.28 Total: 3.38 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: -3.68 Total: -20.28 kcal Atomic # 7 Polarization: -28.56 SS G_CDS: 1.46 Total: -27.10 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.10 Total: 13.93 kcal Atomic # 16 Polarization: -0.70 SS G_CDS: -5.31 Total: -6.01 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -23.73 -8.37 -32.10 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396210887.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.924 kcal (2) G-P(sol) polarization free energy of solvation -23.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds