Wall clock time and date at job start Mon Mar 30 2020 07:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.40118 * 120.05025 * 340.96879 * 3 2 1 5 5 C 1.37202 * 119.96760 * 180.25587 * 4 3 2 6 6 C 1.40067 * 120.72123 * 0.04474 * 5 4 3 7 7 S 1.75931 * 129.51880 * 179.97438 * 6 5 4 8 8 C 1.75153 * 92.80316 * 179.97438 * 7 6 5 9 9 S 1.76201 * 124.55673 * 179.97438 * 8 7 6 10 10 C 1.37780 * 110.87802 * 359.97438 * 8 7 6 11 11 C 1.40533 * 123.25927 * 179.97438 * 10 8 7 12 12 H 1.08006 * 120.00456 * 317.12392 * 11 10 8 13 13 C 1.39516 * 119.99931 * 137.12109 * 11 10 8 14 14 N 1.31307 * 119.99961 * 153.29117 * 13 11 10 15 15 Si 1.86800 * 119.99938 * 333.29609 * 13 11 10 16 16 H 1.48496 * 109.47071 * 95.45380 * 15 13 11 17 17 H 1.48501 * 109.46935 * 215.45278 * 15 13 11 18 18 H 1.48497 * 109.47112 * 335.45027 * 15 13 11 19 19 C 1.39556 * 119.85818 * 359.95576 * 6 5 4 20 20 C 1.38894 * 120.04680 * 161.24784 * 3 2 1 21 21 H 1.07994 * 120.01730 * 0.23103 * 4 3 2 22 22 H 1.08003 * 119.63902 * 179.97438 * 5 4 3 23 23 H 1.41000 * 100.00376 * 354.88734 * 9 8 7 24 24 H 0.96995 * 119.99954 * 179.97438 * 14 13 11 25 25 H 1.07998 * 119.84537 * 359.70269 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2703 -1.1456 0.3955 5 6 4.6423 -1.1414 0.3999 6 6 5.3555 0.0003 0.0129 7 16 7.0936 0.2604 -0.0679 8 6 6.9075 1.9079 -0.6327 9 16 8.2441 2.9962 -0.9983 10 6 5.5752 2.2383 -0.7527 11 6 5.1297 3.4987 -1.1859 12 1 5.6054 4.3957 -0.8174 13 6 4.0730 3.5916 -2.0921 14 7 3.3164 4.6646 -2.1106 15 14 3.7345 2.1893 -3.2789 16 1 2.6896 1.3006 -2.7099 17 1 3.2635 2.7405 -4.5749 18 1 4.9812 1.4121 -3.4954 19 6 4.6678 1.1482 -0.3831 20 6 3.2630 1.1394 -0.3865 21 1 2.7318 -2.0318 0.6971 22 1 5.1781 -2.0277 0.7061 23 1 9.3304 2.1963 -0.5881 24 1 2.5819 4.7292 -2.7409 25 1 2.7209 2.0223 -0.6915 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396210896.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:06 Heat of formation + Delta-G solvation = 67.131650 kcal Electronic energy + Delta-G solvation = -14274.784820 eV Core-core repulsion = 11856.766175 eV Total energy + Delta-G solvation = -2418.018644 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.21218 -36.37655 -34.88693 -32.88921 -30.88781 -29.10217 -26.50673 -23.47356 -22.55435 -20.35173 -18.67601 -17.63334 -16.70458 -15.89648 -15.24923 -14.81013 -14.76418 -13.83345 -13.70120 -13.23334 -13.15246 -12.75818 -12.61174 -12.34163 -12.06854 -11.66468 -11.50178 -11.05592 -10.68115 -10.43312 -10.38057 -10.10593 -9.73732 -9.38439 -8.83840 -8.57459 -7.23600 -7.16137 -6.73707 -4.60101 1.00327 1.36671 2.17042 2.40589 2.66660 2.89330 2.94370 3.00702 3.06699 3.15852 3.42475 3.67751 3.82341 4.17249 4.21502 4.71956 5.12740 5.20746 5.63196 5.71850 5.93572 6.29121 6.36980 6.56875 6.62008 6.83520 7.07186 7.44368 7.75740 8.10885 8.25695 8.53775 9.84946 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.017724 B = 0.010952 C = 0.007453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.358933 B = 2555.975552 C = 3756.086114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C 0.271 3.729 3 C -0.062 4.062 4 C -0.067 4.067 5 C -0.102 4.102 6 C -0.093 4.093 7 S 0.038 5.962 8 C -0.352 4.352 9 S -0.057 6.057 10 C 0.116 3.884 11 C -0.426 4.426 12 H 0.107 0.893 13 C 0.095 3.905 14 N -0.786 5.786 15 Si 0.867 3.133 16 H -0.252 1.252 17 H -0.274 1.274 18 H -0.241 1.241 19 C -0.067 4.067 20 C -0.012 4.012 21 H 0.131 0.869 22 H 0.128 0.872 23 H 0.055 0.945 24 H 0.288 0.712 25 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.238 -7.925 1.788 8.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.116 5.116 2 C -0.043 4.043 3 C -0.069 4.069 4 C -0.091 4.091 5 C -0.126 4.126 6 C -0.211 4.211 7 S 0.298 5.702 8 C -0.579 4.579 9 S 0.103 5.897 10 C 0.102 3.898 11 C -0.458 4.458 12 H 0.124 0.876 13 C -0.127 4.127 14 N -0.409 5.409 15 Si 0.690 3.310 16 H -0.177 1.177 17 H -0.200 1.200 18 H -0.164 1.164 19 C -0.078 4.078 20 C -0.035 4.035 21 H 0.149 0.851 22 H 0.146 0.854 23 H 0.018 0.982 24 H 0.099 0.901 25 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.269 -7.745 1.696 8.576 hybrid contribution -1.053 -0.803 -0.342 1.368 sum 2.216 -8.548 1.354 8.934 Atomic orbital electron populations 1.81171 1.12076 1.08177 1.10210 1.25694 0.92607 0.93146 0.92892 1.15650 0.84099 0.96581 1.10621 1.20732 0.93357 0.96391 0.98576 1.20267 0.93039 0.96601 1.02663 1.22743 0.97798 0.97298 1.03300 1.83129 1.01408 1.11182 1.74496 1.24182 0.98527 0.98422 1.36719 1.86180 0.98478 1.21853 1.83179 1.17117 0.87280 0.91435 0.93930 1.18729 1.12457 0.92372 1.22248 0.87555 1.25993 0.92690 0.96690 0.97342 1.69964 1.11869 1.28601 1.30499 0.86979 0.81593 0.82279 0.80142 1.17701 1.19997 1.16405 1.19516 0.92853 0.94044 1.01386 1.21167 0.92796 0.96729 0.92828 0.85108 0.85429 0.98171 0.90142 0.84526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -8.14 18.54 41.84 0.78 -7.37 15 2 C 0.27 4.69 15.32 -22.47 -0.34 4.35 15 3 C -0.06 -1.05 5.72 -107.02 -0.61 -1.66 15 4 C -0.07 -0.95 9.74 -39.25 -0.38 -1.33 15 5 C -0.10 -1.51 10.04 -39.27 -0.39 -1.90 15 6 C -0.09 -1.71 6.42 -38.40 -0.25 -1.96 15 7 S 0.04 0.70 23.18 -107.50 -2.49 -1.79 15 8 C -0.35 -7.63 6.80 30.57 0.21 -7.42 15 9 S -0.06 -1.13 25.59 -107.50 -2.75 -3.88 15 10 C 0.12 2.66 4.64 -105.84 -0.49 2.17 15 11 C -0.43 -10.49 8.89 -38.24 -0.34 -10.83 15 12 H 0.11 2.81 8.06 -52.48 -0.42 2.39 15 13 C 0.09 2.26 4.34 -17.30 -0.08 2.18 15 14 N -0.79 -19.22 13.95 55.53 0.77 -18.44 15 15 Si 0.87 18.62 24.83 -169.99 -4.22 14.40 15 16 H -0.25 -5.15 5.89 56.52 0.33 -4.82 15 17 H -0.27 -5.76 7.11 56.52 0.40 -5.36 15 18 H -0.24 -5.39 7.11 56.52 0.40 -4.98 15 19 C -0.07 -1.39 4.84 -105.20 -0.51 -1.90 15 20 C -0.01 -0.24 6.55 -38.50 -0.25 -0.49 15 21 H 0.13 1.42 8.06 -52.49 -0.42 0.99 15 22 H 0.13 1.50 8.06 -52.48 -0.42 1.08 15 23 H 0.06 0.95 9.55 96.90 0.93 1.88 15 24 H 0.29 6.43 8.31 -40.82 -0.34 6.09 15 25 H 0.14 2.82 5.93 -52.49 -0.31 2.51 15 LS Contribution 257.46 15.07 3.88 3.88 Total: -1.00 -24.90 257.46 -7.33 -32.23 By element: Atomic # 1 Polarization: -0.37 SS G_CDS: 0.14 Total: -0.23 kcal Atomic # 6 Polarization: -15.35 SS G_CDS: -3.44 Total: -18.79 kcal Atomic # 7 Polarization: -27.36 SS G_CDS: 1.55 Total: -25.81 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -4.22 Total: 14.40 kcal Atomic # 16 Polarization: -0.43 SS G_CDS: -5.24 Total: -5.68 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -24.90 -7.33 -32.23 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396210896.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.359 kcal (2) G-P(sol) polarization free energy of solvation -24.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds