Wall clock time and date at job start Mon Mar 30 2020 07:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.40118 * 120.05025 * 340.96879 * 3 2 1 5 5 C 1.37202 * 119.96760 * 180.25587 * 4 3 2 6 6 C 1.40067 * 120.72123 * 0.04474 * 5 4 3 7 7 S 1.75931 * 129.51880 * 179.97438 * 6 5 4 8 8 C 1.75153 * 92.80316 * 179.97438 * 7 6 5 9 9 S 1.76201 * 124.55673 * 179.97438 * 8 7 6 10 10 C 1.37780 * 110.87802 * 359.97438 * 8 7 6 11 11 C 1.40533 * 123.25927 * 179.97438 * 10 8 7 12 12 H 1.08006 * 120.00456 * 317.12392 * 11 10 8 13 13 C 1.39516 * 119.99931 * 137.12109 * 11 10 8 14 14 N 1.31307 * 119.99961 * 153.29117 * 13 11 10 15 15 Si 1.86800 * 119.99938 * 333.29609 * 13 11 10 16 16 H 1.48496 * 109.47071 * 95.45380 * 15 13 11 17 17 H 1.48501 * 109.46935 * 215.45278 * 15 13 11 18 18 H 1.48497 * 109.47112 * 335.45027 * 15 13 11 19 19 C 1.39556 * 119.85818 * 359.95576 * 6 5 4 20 20 C 1.38894 * 120.04680 * 161.24784 * 3 2 1 21 21 H 1.07994 * 120.01730 * 0.23103 * 4 3 2 22 22 H 1.08003 * 119.63902 * 179.97438 * 5 4 3 23 23 H 1.41000 * 100.00376 * 354.88734 * 9 8 7 24 24 H 0.96995 * 119.99954 * 179.97438 * 14 13 11 25 25 H 1.07998 * 119.84537 * 359.70269 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2703 -1.1456 0.3955 5 6 4.6423 -1.1414 0.3999 6 6 5.3555 0.0003 0.0129 7 16 7.0936 0.2604 -0.0679 8 6 6.9075 1.9079 -0.6327 9 16 8.2441 2.9962 -0.9983 10 6 5.5752 2.2383 -0.7527 11 6 5.1297 3.4987 -1.1859 12 1 5.6054 4.3957 -0.8174 13 6 4.0730 3.5916 -2.0921 14 7 3.3164 4.6646 -2.1106 15 14 3.7345 2.1893 -3.2789 16 1 2.6896 1.3006 -2.7099 17 1 3.2635 2.7405 -4.5749 18 1 4.9812 1.4121 -3.4954 19 6 4.6678 1.1482 -0.3831 20 6 3.2630 1.1394 -0.3865 21 1 2.7318 -2.0318 0.6971 22 1 5.1781 -2.0277 0.7061 23 1 9.3304 2.1963 -0.5881 24 1 2.5819 4.7292 -2.7409 25 1 2.7209 2.0223 -0.6915 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396210896.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:04 Heat of formation + Delta-G solvation = 54.116274 kcal Electronic energy + Delta-G solvation = -14275.349209 eV Core-core repulsion = 11856.766175 eV Total energy + Delta-G solvation = -2418.583033 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -40.61825 -37.83298 -36.44115 -34.57076 -32.26252 -30.58451 -28.21555 -24.89084 -23.99318 -21.95156 -20.20214 -19.14489 -18.24664 -17.52636 -16.75579 -16.40211 -16.17724 -15.24774 -15.00295 -14.91017 -14.68132 -14.28931 -14.13297 -13.74109 -13.59301 -13.18261 -13.07966 -12.68094 -12.14697 -12.11649 -11.91948 -11.64886 -11.35042 -11.03452 -10.37745 -10.01241 -8.94030 -8.69531 -8.36767 -6.39093 -0.37110 -0.07771 0.69109 0.88259 1.07597 1.26911 1.29340 1.40611 1.51572 1.55589 1.89334 2.06561 2.12200 2.71042 2.83608 3.02559 3.83829 3.96884 4.28328 4.34827 4.62176 4.95392 5.01032 5.11918 5.21800 5.28280 5.70143 5.80400 6.21434 6.38553 6.50605 6.73820 8.13549 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.017724 B = 0.010952 C = 0.007453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.358933 B = 2555.975552 C = 3756.086114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C 0.285 3.715 3 C -0.055 4.055 4 C -0.042 4.042 5 C -0.086 4.086 6 C -0.104 4.104 7 S 0.081 5.919 8 C -0.361 4.361 9 S -0.079 6.079 10 C 0.099 3.901 11 C -0.458 4.458 12 H 0.069 0.931 13 C 0.073 3.927 14 N -0.829 5.829 15 Si 0.909 3.091 16 H -0.237 1.237 17 H -0.270 1.270 18 H -0.254 1.254 19 C -0.096 4.096 20 C -0.031 4.031 21 H 0.179 0.821 22 H 0.173 0.827 23 H 0.085 0.915 24 H 0.293 0.707 25 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.463 -11.771 2.600 12.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.136 5.136 2 C -0.030 4.030 3 C -0.062 4.062 4 C -0.065 4.065 5 C -0.109 4.109 6 C -0.222 4.222 7 S 0.341 5.659 8 C -0.587 4.587 9 S 0.082 5.918 10 C 0.085 3.915 11 C -0.490 4.490 12 H 0.087 0.913 13 C -0.145 4.145 14 N -0.455 5.455 15 Si 0.730 3.270 16 H -0.161 1.161 17 H -0.195 1.195 18 H -0.178 1.178 19 C -0.107 4.107 20 C -0.054 4.054 21 H 0.197 0.803 22 H 0.190 0.810 23 H 0.048 0.952 24 H 0.103 0.897 25 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 3.494 -11.595 2.515 12.369 hybrid contribution -0.991 0.250 -0.458 1.120 sum 2.503 -11.346 2.058 11.799 Atomic orbital electron populations 1.81197 1.12720 1.08873 1.10826 1.25684 0.92512 0.92483 0.92279 1.15761 0.83747 0.96744 1.09989 1.21251 0.93195 0.96495 0.95608 1.20777 0.93286 0.96441 1.00399 1.23071 0.97786 0.97865 1.03516 1.82832 1.01406 1.07800 1.73866 1.24736 0.98739 1.00697 1.34567 1.86282 0.99414 1.22947 1.83206 1.17330 0.88485 0.91869 0.93800 1.18557 1.13846 0.92135 1.24487 0.91268 1.26408 0.92251 0.98059 0.97753 1.69991 1.13140 1.30340 1.32019 0.86364 0.81124 0.80548 0.78954 1.16054 1.19483 1.17769 1.19390 0.93255 0.94442 1.03587 1.21037 0.92549 0.97208 0.94617 0.80338 0.80986 0.95191 0.89655 0.86711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -16.05 18.54 19.01 0.35 -15.69 15 2 C 0.28 9.11 15.32 88.33 1.35 10.46 15 3 C -0.06 -1.70 5.72 -21.42 -0.12 -1.82 15 4 C -0.04 -0.96 9.74 22.48 0.22 -0.74 15 5 C -0.09 -2.05 10.04 22.47 0.23 -1.82 15 6 C -0.10 -3.50 6.42 23.03 0.15 -3.35 15 7 S 0.08 2.76 23.18 -56.49 -1.31 1.45 15 8 C -0.36 -15.51 6.80 67.71 0.46 -15.05 15 9 S -0.08 -3.12 25.59 -56.49 -1.45 -4.57 15 10 C 0.10 4.64 4.64 -20.65 -0.10 4.55 15 11 C -0.46 -23.81 8.89 23.14 0.21 -23.61 15 12 H 0.07 3.99 8.06 -2.91 -0.02 3.96 15 13 C 0.07 3.65 4.34 85.08 0.37 4.02 15 14 N -0.83 -42.88 13.95 21.78 0.30 -42.58 15 15 Si 0.91 39.07 24.83 68.60 1.70 40.77 15 16 H -0.24 -9.42 5.89 99.48 0.59 -8.83 15 17 H -0.27 -11.16 7.11 99.48 0.71 -10.45 15 18 H -0.25 -11.29 7.11 99.48 0.71 -10.59 15 19 C -0.10 -3.90 4.84 -20.24 -0.10 -4.00 15 20 C -0.03 -1.19 6.55 22.97 0.15 -1.04 15 21 H 0.18 2.48 8.06 -2.91 -0.02 2.45 15 22 H 0.17 2.70 8.06 -2.91 -0.02 2.68 15 23 H 0.08 2.77 9.55 73.80 0.70 3.48 15 24 H 0.29 13.78 8.31 -92.71 -0.77 13.01 15 25 H 0.11 4.86 5.93 -2.91 -0.02 4.84 15 Total: -1.00 -56.72 257.46 4.27 -52.45 By element: Atomic # 1 Polarization: -1.29 SS G_CDS: 1.85 Total: 0.55 kcal Atomic # 6 Polarization: -35.21 SS G_CDS: 2.81 Total: -32.40 kcal Atomic # 7 Polarization: -58.93 SS G_CDS: 0.66 Total: -58.27 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 1.70 Total: 40.77 kcal Atomic # 16 Polarization: -0.36 SS G_CDS: -2.75 Total: -3.12 kcal Total: -56.72 4.27 -52.45 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396210896.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.571 kcal (2) G-P(sol) polarization free energy of solvation -56.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds