Wall clock time and date at job start Mon Mar 30 2020 07:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.39246 * 119.93037 * 22.37553 * 3 2 1 5 5 C 1.37849 * 120.16715 * 179.97438 * 4 3 2 6 6 C 1.38775 * 120.29698 * 0.29795 * 5 4 3 7 7 S 1.76199 * 119.72156 * 179.72225 * 6 5 4 8 8 C 1.40641 * 120.55918 * 359.47429 * 6 5 4 9 9 S 1.75819 * 130.11617 * 180.17178 * 8 6 5 10 10 C 1.69999 * 93.18301 * 180.30345 * 9 8 6 11 11 C 1.36613 * 111.81957 * 0.02562 * 10 9 8 12 12 C 1.40933 * 123.29476 * 179.97438 * 11 10 9 13 13 H 1.08003 * 120.00414 * 154.37542 * 12 11 10 14 14 C 1.39668 * 119.99800 * 334.38226 * 12 11 10 15 15 N 1.31094 * 120.00384 * 350.18645 * 14 12 11 16 16 Si 1.86804 * 119.99811 * 170.19205 * 14 12 11 17 17 H 1.48495 * 109.47179 * 59.99867 * 16 14 12 18 18 H 1.48500 * 109.46903 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47066 * 299.99297 * 16 14 12 20 20 C 1.38912 * 119.66663 * 0.49894 * 8 6 5 21 21 H 1.08000 * 119.91642 * 0.02562 * 4 3 2 22 22 H 1.08004 * 119.84715 * 180.02562 * 5 4 3 23 23 H 1.34505 * 102.99862 * 90.00335 * 7 6 5 24 24 H 1.07999 * 124.08971 * 179.97438 * 10 9 8 25 25 H 0.96999 * 120.00531 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2632 -1.1149 -0.4594 5 6 4.6417 -1.1194 -0.4620 6 6 5.3463 -0.0159 -0.0018 7 16 7.1081 -0.0408 -0.0051 8 6 4.6660 1.1241 0.4625 9 16 5.2947 2.6419 1.0886 10 6 3.7434 3.2844 1.3540 11 6 2.7614 2.4062 0.9925 12 6 1.3863 2.6914 1.1112 13 1 0.6742 2.1943 0.4692 14 6 0.9445 3.6171 2.0591 15 7 1.7748 4.0763 2.9637 16 14 -0.8299 4.2010 2.0380 17 1 -1.7356 3.0387 2.2222 18 1 -1.0439 5.1741 3.1391 19 1 -1.1207 4.8539 0.7363 20 6 3.2770 1.1405 0.4696 21 1 2.7211 -1.9786 -0.8153 22 1 5.1758 -1.9873 -0.8199 23 1 7.4154 0.4569 -1.2163 24 1 3.5567 4.2676 1.7601 25 1 1.4678 4.7189 3.6222 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396211406.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:33 Heat of formation + Delta-G solvation = 65.993214 kcal Electronic energy + Delta-G solvation = -14188.293598 eV Core-core repulsion = 11770.225587 eV Total energy + Delta-G solvation = -2418.068011 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -39.07199 -35.82239 -35.17937 -32.52715 -30.87769 -28.62797 -26.25343 -23.35071 -22.78904 -19.94725 -18.86586 -17.81081 -16.66468 -15.73343 -15.12836 -15.11496 -14.62517 -13.96240 -13.70942 -13.07645 -12.92355 -12.41388 -12.34420 -11.84852 -11.72652 -11.53612 -11.17860 -11.10658 -10.77189 -10.47177 -10.16443 -10.15849 -9.57852 -9.30381 -8.71853 -7.95805 -7.71161 -6.95335 -6.76282 -4.44891 0.76814 1.59388 1.85193 2.55015 2.83403 2.97959 3.04669 3.10453 3.30645 3.40062 3.60711 3.67907 3.94082 4.34671 4.46369 5.09319 5.25350 5.27547 5.66149 5.88779 6.24173 6.34237 6.50963 6.59477 7.01120 7.09179 7.49960 7.79644 8.08171 8.26786 8.62014 8.75278 10.18493 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.024820 B = 0.008055 C = 0.006169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.867508 B = 3475.208958 C = 4538.073699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C 0.273 3.727 3 C 0.034 3.966 4 C -0.103 4.103 5 C -0.076 4.076 6 C -0.062 4.062 7 S -0.135 6.135 8 C -0.117 4.117 9 S 0.102 5.898 10 C -0.349 4.349 11 C 0.072 3.928 12 C -0.437 4.437 13 H 0.079 0.921 14 C 0.073 3.927 15 N -0.796 5.796 16 Si 0.907 3.093 17 H -0.264 1.264 18 H -0.277 1.277 19 H -0.264 1.264 20 C -0.026 4.026 21 H 0.133 0.867 22 H 0.138 0.862 23 H 0.073 0.927 24 H 0.165 0.835 25 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.620 -5.801 -4.516 9.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.101 5.101 2 C -0.042 4.042 3 C 0.029 3.971 4 C -0.130 4.130 5 C -0.098 4.098 6 C -0.181 4.181 7 S 0.023 5.977 8 C -0.236 4.236 9 S 0.367 5.633 10 C -0.486 4.486 11 C 0.064 3.936 12 C -0.469 4.469 13 H 0.097 0.903 14 C -0.144 4.144 15 N -0.422 5.422 16 Si 0.732 3.268 17 H -0.189 1.189 18 H -0.202 1.202 19 H -0.189 1.189 20 C -0.041 4.041 21 H 0.151 0.849 22 H 0.156 0.844 23 H 0.038 0.962 24 H 0.182 0.818 25 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.198 -5.016 -3.796 9.559 hybrid contribution -2.780 0.323 -0.916 2.945 sum 4.417 -4.694 -4.713 7.985 Atomic orbital electron populations 1.81098 1.12127 1.08576 1.08257 1.25406 0.92568 0.92562 0.93647 1.16071 0.84324 0.94752 1.01931 1.20748 0.93798 0.96923 1.01521 1.21066 0.93299 0.96917 0.98546 1.20600 0.93926 0.95852 1.07756 1.85786 1.01843 1.85284 1.24773 1.22891 0.96292 0.99486 1.04944 1.82202 1.10755 1.05131 1.65169 1.24570 0.92589 1.06030 1.25410 1.17279 0.94702 0.87072 0.94551 1.19100 0.91445 1.20298 1.16085 0.90286 1.25711 0.99793 0.95048 0.93858 1.69831 1.36542 1.24022 1.11853 0.86340 0.82282 0.79340 0.78844 1.18856 1.20164 1.18858 1.19671 0.91241 0.94589 0.98633 0.84898 0.84407 0.96236 0.81808 0.90930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -9.21 17.81 41.84 0.75 -8.46 15 2 C 0.27 5.58 12.81 -22.47 -0.29 5.29 15 3 C 0.03 0.66 5.80 -106.07 -0.61 0.04 15 4 C -0.10 -1.52 9.70 -39.35 -0.38 -1.91 15 5 C -0.08 -1.06 9.73 -39.53 -0.38 -1.45 15 6 C -0.06 -1.03 6.15 -38.48 -0.24 -1.26 15 7 S -0.13 -1.93 25.42 -107.50 -2.73 -4.66 15 8 C -0.12 -2.33 6.31 -38.43 -0.24 -2.57 15 9 S 0.10 2.07 22.57 -107.50 -2.43 -0.36 15 10 C -0.35 -8.52 9.50 30.15 0.29 -8.24 15 11 C 0.07 1.82 5.66 -106.21 -0.60 1.22 15 12 C -0.44 -11.41 8.38 -38.03 -0.32 -11.73 15 13 H 0.08 2.05 5.33 -52.48 -0.28 1.77 15 14 C 0.07 1.84 5.36 -17.33 -0.09 1.75 15 15 N -0.80 -20.47 10.92 55.54 0.61 -19.87 15 16 Si 0.91 19.67 29.57 -169.99 -5.03 14.65 15 17 H -0.26 -5.85 7.11 56.52 0.40 -5.45 15 18 H -0.28 -5.75 7.11 56.52 0.40 -5.35 15 19 H -0.26 -5.67 7.11 56.52 0.40 -5.27 15 20 C -0.03 -0.58 6.01 -104.87 -0.63 -1.21 15 21 H 0.13 1.52 8.06 -52.49 -0.42 1.10 15 22 H 0.14 1.46 8.06 -52.48 -0.42 1.04 15 23 H 0.07 0.96 9.07 97.61 0.89 1.85 15 24 H 0.16 4.26 6.45 -52.49 -0.34 3.92 15 25 H 0.28 6.64 8.30 -40.82 -0.34 6.30 15 LS Contribution 258.29 15.07 3.89 3.89 Total: -1.00 -26.80 258.29 -8.16 -34.96 By element: Atomic # 1 Polarization: -0.38 SS G_CDS: 0.29 Total: -0.09 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: -3.50 Total: -20.06 kcal Atomic # 7 Polarization: -29.68 SS G_CDS: 1.35 Total: -28.33 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.03 Total: 14.65 kcal Atomic # 16 Polarization: 0.14 SS G_CDS: -5.16 Total: -5.02 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -26.80 -8.16 -34.96 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396211406.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.953 kcal (2) G-P(sol) polarization free energy of solvation -26.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds