Wall clock time and date at job start Mon Mar 30 2020 07:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.35171 * 123.07448 * 245.86770 * 3 2 1 5 5 S 1.69950 * 112.17296 * 179.71331 * 4 3 2 6 6 C 1.75983 * 93.10336 * 0.26561 * 5 4 3 7 7 C 1.38959 * 129.63298 * 180.02562 * 6 5 4 8 8 C 1.40276 * 120.39087 * 179.97438 * 7 6 5 9 9 C 1.40792 * 120.49822 * 179.97438 * 8 7 6 10 10 H 1.08000 * 119.99409 * 154.19266 * 9 8 7 11 11 C 1.39881 * 120.00645 * 334.18900 * 9 8 7 12 12 N 1.30927 * 119.99830 * 343.51543 * 11 9 8 13 13 Si 1.86801 * 120.00287 * 163.51003 * 11 9 8 14 14 H 1.48498 * 109.46590 * 90.00321 * 13 11 9 15 15 H 1.48497 * 109.46997 * 210.00005 * 13 11 9 16 16 H 1.48495 * 109.47083 * 330.00465 * 13 11 9 17 17 C 1.46385 * 118.99731 * 359.97438 * 8 7 6 18 18 S 1.76198 * 120.39132 * 179.97438 * 17 8 7 19 19 C 1.37488 * 119.22250 * 0.02562 * 17 8 7 20 20 C 1.40067 * 109.86539 * 0.02562 * 6 5 4 21 21 H 1.07997 * 123.91668 * 359.97229 * 4 3 2 22 22 H 1.07997 * 119.80367 * 359.95544 * 7 6 5 23 23 H 0.96997 * 119.99793 * 185.03925 * 12 11 9 24 24 H 1.34495 * 103.00374 * 270.02558 * 18 17 8 25 25 H 1.08004 * 119.65308 * 179.97438 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3054 0.4641 1.0337 5 16 4.9743 0.3262 0.7436 6 6 4.7359 -0.3827 -0.8494 7 6 5.6761 -0.8038 -1.7819 8 6 5.2653 -1.3486 -3.0076 9 6 6.2160 -1.7754 -3.9543 10 1 5.9577 -2.5402 -4.6718 11 6 7.4949 -1.2091 -3.9656 12 7 7.7177 -0.0827 -3.3364 13 14 8.8851 -2.0597 -4.8785 14 1 8.9276 -1.5724 -6.2806 15 1 10.1755 -1.7557 -4.2094 16 1 8.6572 -3.5270 -4.8710 17 6 3.8333 -1.4666 -3.2873 18 16 3.2764 -2.1448 -4.8152 19 6 2.9278 -1.0410 -2.3443 20 6 3.3662 -0.4957 -1.1199 21 1 2.8831 0.8707 1.9407 22 1 6.7293 -0.7108 -1.5619 23 1 8.5843 0.3476 -3.4045 24 1 3.1869 -1.0643 -5.6112 25 1 1.8696 -1.1244 -2.5436 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396211481.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:30:17 Heat of formation + Delta-G solvation = 47.828954 kcal Electronic energy + Delta-G solvation = -13945.201762 eV Core-core repulsion = 11526.346090 eV Total energy + Delta-G solvation = -2418.855672 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.90797 -37.85894 -36.37884 -34.65215 -31.48585 -30.93195 -27.19030 -25.47979 -23.35023 -22.65811 -19.54532 -18.97627 -18.15005 -17.81104 -16.96114 -16.17112 -15.78963 -15.31954 -15.15282 -14.58862 -14.36583 -14.20300 -13.84096 -13.78907 -13.21659 -13.16482 -12.80599 -12.60696 -12.32817 -12.02458 -11.85608 -11.50919 -11.15077 -11.03346 -10.24870 -9.28078 -8.85579 -8.75689 -8.50197 -6.43092 -0.16098 0.29916 0.75594 0.97505 1.13666 1.21049 1.43226 1.49700 1.58811 1.64811 2.07187 2.18107 2.31879 2.67648 3.15705 3.42556 3.93880 4.16236 4.64677 4.81166 4.84404 5.00983 5.14680 5.27582 5.51636 5.70190 5.79119 5.96125 6.41629 6.45254 6.68678 6.73268 8.12153 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.021961 B = 0.007511 C = 0.005695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.683753 B = 3726.915362 C = 4915.729441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C 0.300 3.700 3 C -0.028 4.028 4 C -0.194 4.194 5 S 0.175 5.825 6 C -0.102 4.102 7 C -0.171 4.171 8 C 0.121 3.879 9 C -0.438 4.438 10 H 0.104 0.896 11 C 0.037 3.963 12 N -0.794 5.794 13 Si 0.985 3.015 14 H -0.262 1.262 15 H -0.264 1.264 16 H -0.253 1.253 17 C -0.213 4.213 18 S -0.123 6.123 19 C -0.004 4.004 20 C -0.196 4.196 21 H 0.201 0.799 22 H 0.120 0.880 23 H 0.298 0.702 24 H 0.051 0.949 25 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.084 0.386 3.906 4.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.142 5.142 2 C -0.016 4.016 3 C -0.047 4.047 4 C -0.333 4.333 5 S 0.441 5.559 6 C -0.217 4.217 7 C -0.199 4.199 8 C 0.112 3.888 9 C -0.466 4.466 10 H 0.122 0.878 11 C -0.183 4.183 12 N -0.417 5.417 13 Si 0.805 3.195 14 H -0.187 1.187 15 H -0.188 1.188 16 H -0.176 1.176 17 C -0.327 4.327 18 S 0.035 5.965 19 C -0.027 4.027 20 C -0.204 4.204 21 H 0.218 0.782 22 H 0.138 0.862 23 H 0.110 0.890 24 H 0.015 0.985 25 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 1.443 0.380 4.193 4.451 hybrid contribution -0.146 0.847 -1.026 1.339 sum 1.297 1.227 3.167 3.636 Atomic orbital electron populations 1.81168 1.12442 1.11134 1.09408 1.25299 0.92030 0.92080 0.92150 1.15868 0.84108 1.08607 0.96144 1.25129 0.99369 1.05845 1.02948 1.82550 1.00623 1.62916 1.09819 1.22600 0.95993 1.03593 0.99503 1.20512 0.97565 1.08977 0.92800 1.18833 0.90016 0.88073 0.91847 1.20153 0.95103 1.18118 1.13191 0.87817 1.26932 1.01733 0.94425 0.95186 1.69847 1.26153 1.13563 1.32121 0.85121 0.75954 0.80026 0.78447 1.18687 1.18824 1.17620 1.22092 0.95510 1.17523 0.97532 1.84879 1.87270 1.15396 1.08973 1.20846 0.97668 0.92881 0.91257 1.18278 0.91129 1.14514 0.96516 0.78230 0.86211 0.89022 0.98470 0.86829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -17.01 18.54 19.00 0.35 -16.66 15 2 C 0.30 10.41 15.37 88.33 1.36 11.77 15 3 C -0.03 -0.97 5.85 -20.67 -0.12 -1.09 15 4 C -0.19 -5.43 10.62 67.11 0.71 -4.72 15 5 S 0.17 5.36 22.98 -56.49 -1.30 4.06 15 6 C -0.10 -4.22 6.40 22.89 0.15 -4.07 15 7 C -0.17 -7.95 8.71 22.94 0.20 -7.75 15 8 C 0.12 5.86 5.71 -20.04 -0.11 5.75 15 9 C -0.44 -20.55 8.53 23.29 0.20 -20.35 15 10 H 0.10 4.74 7.16 -2.91 -0.02 4.72 15 11 C 0.04 1.61 5.15 85.23 0.44 2.05 15 12 N -0.79 -35.70 10.97 21.82 0.24 -35.47 15 13 Si 0.98 33.03 29.59 68.60 2.03 35.06 15 14 H -0.26 -8.61 7.11 99.48 0.71 -7.90 15 15 H -0.26 -8.42 7.11 99.48 0.71 -7.71 15 16 H -0.25 -8.40 7.11 99.48 0.71 -7.69 15 17 C -0.21 -9.68 6.30 24.21 0.15 -9.52 15 18 S -0.12 -4.93 24.52 -56.49 -1.39 -6.32 15 19 C 0.00 -0.15 9.54 22.77 0.22 0.06 15 20 C -0.20 -8.02 6.03 -20.08 -0.12 -8.15 15 21 H 0.20 3.98 8.06 -2.91 -0.02 3.95 15 22 H 0.12 5.71 6.19 -2.91 -0.02 5.69 15 23 H 0.30 11.98 8.30 -92.71 -0.77 11.21 15 24 H 0.05 2.00 9.07 73.35 0.67 2.66 15 25 H 0.11 4.55 8.03 -2.91 -0.02 4.53 15 Total: -1.00 -50.82 262.95 4.94 -45.88 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: 1.93 Total: 9.46 kcal Atomic # 6 Polarization: -39.09 SS G_CDS: 3.07 Total: -36.03 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: 0.59 Total: -52.12 kcal Atomic # 14 Polarization: 33.03 SS G_CDS: 2.03 Total: 35.06 kcal Atomic # 16 Polarization: 0.43 SS G_CDS: -2.68 Total: -2.26 kcal Total: -50.82 4.94 -45.88 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396211481.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.711 kcal (2) G-P(sol) polarization free energy of solvation -50.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds