Wall clock time and date at job start Mon Mar 30 2020 07:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39250 * 120.39888 * 100.98227 * 3 2 1 5 5 C 1.38406 * 120.76726 * 180.23444 * 4 3 2 6 6 S 1.76202 * 118.89021 * 179.80016 * 5 4 3 7 7 C 1.40908 * 122.21933 * 359.51313 * 5 4 3 8 8 S 1.76228 * 130.08394 * 180.26241 * 7 5 4 9 9 C 1.75482 * 91.52203 * 180.02562 * 8 7 5 10 10 C 1.32625 * 110.60711 * 359.97438 * 9 8 7 11 11 C 1.39248 * 120.65077 * 0.26451 * 7 5 4 12 12 C 1.46312 * 120.39930 * 280.75970 * 3 2 1 13 13 C 1.39683 * 120.59984 * 0.03125 * 12 3 2 14 14 H 1.07997 * 119.99893 * 320.47444 * 13 12 3 15 15 C 1.40239 * 120.00028 * 140.47396 * 13 12 3 16 16 N 1.30715 * 120.00310 * 339.65247 * 15 13 12 17 17 Si 1.86804 * 119.99807 * 159.65403 * 15 13 12 18 18 H 1.48499 * 109.46968 * 60.00130 * 17 15 13 19 19 H 1.48501 * 109.47060 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47227 * 299.99840 * 17 15 13 21 21 H 1.08001 * 119.61845 * 0.02562 * 4 3 2 22 22 H 1.41003 * 99.99708 * 269.72629 * 6 5 4 23 23 H 1.07993 * 124.69866 * 179.97438 * 9 8 7 24 24 H 1.07992 * 122.11075 * 180.02562 * 10 9 8 25 25 H 0.97000 * 120.00707 * 180.36033 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2725 0.2298 -1.1791 5 6 4.6565 0.2273 -1.1887 6 16 5.4977 0.5176 -2.7095 7 6 5.4156 0.0064 -0.0223 8 16 7.1628 -0.0351 0.2037 9 6 6.9803 -0.3617 1.9181 10 6 5.6971 -0.4250 2.2473 11 6 4.7887 -0.2262 1.1991 12 6 3.3084 -0.2346 1.2398 13 6 2.6313 -0.4636 2.4399 14 1 1.7380 0.0974 2.6714 15 6 3.1115 -1.4221 3.3440 16 7 3.9204 -2.3624 2.9315 17 14 2.5951 -1.3550 5.1380 18 1 1.1184 -1.4802 5.2330 19 1 3.2357 -2.4708 5.8796 20 1 3.0211 -0.0605 5.7277 21 1 2.7327 0.4081 -2.0973 22 1 5.6161 -0.8063 -3.1803 23 1 7.7995 -0.4930 2.6095 24 1 5.3729 -0.6174 3.2592 25 1 4.2484 -3.0285 3.5558 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396211700.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:34:03 Heat of formation + Delta-G solvation = 51.912920 kcal Electronic energy + Delta-G solvation = -14298.005212 eV Core-core repulsion = 11879.326634 eV Total energy + Delta-G solvation = -2418.678578 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.87602 -37.37475 -36.01480 -35.44564 -32.04171 -30.29525 -27.51788 -24.85223 -23.50521 -21.98635 -19.91018 -19.00304 -17.93061 -17.52904 -16.96133 -16.49064 -15.75449 -15.09447 -14.81131 -14.59471 -14.36315 -13.93424 -13.80351 -13.46340 -13.40626 -13.10923 -12.97458 -12.55037 -12.37574 -12.13390 -11.77706 -11.60074 -11.21079 -10.94043 -9.97123 -9.18832 -9.14140 -8.94990 -8.44131 -6.77063 0.05536 0.24631 0.85325 1.02936 1.31957 1.35918 1.44972 1.48004 1.49713 1.94711 2.06704 2.08168 2.35910 2.52924 3.32480 3.52146 4.14108 4.41655 4.66269 4.70601 4.83327 4.93894 5.17488 5.27252 5.52294 5.62773 5.73913 5.85841 6.05880 6.35787 6.46643 6.91638 7.86861 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.018777 B = 0.009737 C = 0.006639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.806652 B = 2874.819441 C = 4216.338547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C 0.311 3.689 3 C -0.221 4.221 4 C 0.056 3.944 5 C -0.229 4.229 6 S -0.150 6.150 7 C -0.064 4.064 8 S 0.097 5.903 9 C -0.260 4.260 10 C -0.064 4.064 11 C -0.147 4.147 12 C 0.188 3.812 13 C -0.429 4.429 14 H 0.093 0.907 15 C 0.049 3.951 16 N -0.750 5.750 17 Si 0.974 3.026 18 H -0.264 1.264 19 H -0.254 1.254 20 H -0.248 1.248 21 H 0.136 0.864 22 H 0.079 0.921 23 H 0.181 0.819 24 H 0.127 0.873 25 H 0.310 0.690 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.093 0.629 1.575 7.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.201 5.201 2 C 0.001 3.999 3 C -0.231 4.231 4 C 0.031 3.969 5 C -0.347 4.347 6 S 0.007 5.993 7 C -0.184 4.184 8 S 0.359 5.641 9 C -0.393 4.393 10 C -0.093 4.093 11 C -0.157 4.157 12 C 0.180 3.820 13 C -0.454 4.454 14 H 0.111 0.889 15 C -0.177 4.177 16 N -0.370 5.370 17 Si 0.793 3.207 18 H -0.189 1.189 19 H -0.177 1.177 20 H -0.171 1.171 21 H 0.154 0.846 22 H 0.044 0.956 23 H 0.198 0.802 24 H 0.144 0.856 25 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 7.270 0.943 -0.040 7.331 hybrid contribution -1.607 -1.464 2.146 3.055 sum 5.663 -0.522 2.106 6.064 Atomic orbital electron populations 1.81029 1.12867 1.15960 1.10202 1.25592 0.92419 0.90659 0.91200 1.16654 0.83327 1.28540 0.94578 1.20921 0.91902 0.88261 0.95856 1.19365 0.93703 1.28386 0.93258 1.86232 1.76751 1.14088 1.22216 1.22962 0.97049 1.01984 0.96391 1.83562 1.00940 1.75024 1.04525 1.25275 1.00141 1.14812 0.99107 1.19753 0.91580 0.98464 0.99508 1.19090 0.93124 1.11208 0.92289 1.19535 0.89189 0.82967 0.90348 1.19899 1.09315 1.15663 1.00568 0.88864 1.26812 0.92810 0.92921 1.05151 1.69760 1.19679 1.07458 1.40101 0.85327 0.79913 0.80552 0.74942 1.18859 1.17726 1.17149 0.84607 0.95624 0.80155 0.85562 0.87789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -24.28 18.54 19.00 0.35 -23.93 15 2 C 0.31 14.10 14.47 88.33 1.28 15.38 15 3 C -0.22 -9.87 5.93 -19.69 -0.12 -9.99 15 4 C 0.06 2.27 9.37 22.55 0.21 2.48 15 5 C -0.23 -9.20 6.14 22.96 0.14 -9.06 15 6 S -0.15 -5.09 25.31 -56.49 -1.43 -6.52 15 7 C -0.06 -2.68 6.34 23.17 0.15 -2.53 15 8 S 0.10 3.37 22.85 -56.49 -1.29 2.08 15 9 C -0.26 -8.88 11.11 66.66 0.74 -8.14 15 10 C -0.06 -2.54 8.25 21.56 0.18 -2.36 15 11 C -0.15 -6.49 5.51 -19.96 -0.11 -6.60 15 12 C 0.19 8.72 5.66 -18.21 -0.10 8.62 15 13 C -0.43 -19.45 8.19 23.11 0.19 -19.26 15 14 H 0.09 4.24 7.74 -2.91 -0.02 4.21 15 15 C 0.05 2.00 3.83 85.35 0.33 2.33 15 16 N -0.75 -31.45 10.83 21.88 0.24 -31.22 15 17 Si 0.97 30.95 29.61 68.60 2.03 32.98 15 18 H -0.26 -8.70 7.11 99.48 0.71 -7.99 15 19 H -0.25 -7.39 7.11 99.48 0.71 -6.68 15 20 H -0.25 -7.67 7.11 99.48 0.71 -6.96 15 21 H 0.14 4.81 8.06 -2.91 -0.02 4.79 15 22 H 0.08 2.53 9.55 73.80 0.70 3.24 15 23 H 0.18 4.87 8.06 -2.91 -0.02 4.85 15 24 H 0.13 4.95 6.06 -2.91 -0.02 4.93 15 25 H 0.31 11.43 8.29 -92.71 -0.77 10.67 15 Total: -1.00 -49.45 261.02 4.75 -44.70 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: 1.97 Total: 11.05 kcal Atomic # 6 Polarization: -32.03 SS G_CDS: 2.88 Total: -29.14 kcal Atomic # 7 Polarization: -55.74 SS G_CDS: 0.59 Total: -55.15 kcal Atomic # 14 Polarization: 30.95 SS G_CDS: 2.03 Total: 32.98 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.72 Total: -4.44 kcal Total: -49.45 4.75 -44.70 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396211700.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.616 kcal (2) G-P(sol) polarization free energy of solvation -49.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds