Wall clock time and date at job start Mon Mar 30 2020 07:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39907 * 119.47143 * 228.43070 * 3 2 1 5 5 C 1.35908 * 121.06082 * 179.97438 * 4 3 2 6 6 C 1.40731 * 120.47332 * 0.04987 * 5 4 3 7 7 C 1.40153 * 120.25507 * 179.97438 * 6 5 4 8 8 H 1.07994 * 120.00222 * 145.30631 * 7 6 5 9 9 C 1.40108 * 119.99902 * 325.31163 * 7 6 5 10 10 N 1.30755 * 120.00060 * 166.90811 * 9 7 6 11 11 Si 1.86804 * 119.99965 * 346.90732 * 9 7 6 12 12 H 1.48501 * 109.46945 * 93.03343 * 11 9 7 13 13 H 1.48499 * 109.47204 * 213.03206 * 11 9 7 14 14 H 1.48497 * 109.47099 * 333.03309 * 11 9 7 15 15 C 1.47861 * 119.48944 * 359.97427 * 6 5 4 16 16 C 1.40302 * 129.19628 * 179.97438 * 15 6 5 17 17 S 1.76196 * 122.22549 * 359.97438 * 16 15 6 18 18 C 1.33583 * 115.55588 * 180.02562 * 16 15 6 19 19 S 1.75495 * 110.59362 * 0.26649 * 18 16 15 20 20 C 1.39576 * 118.07287 * 0.02562 * 15 6 5 21 21 H 1.08008 * 119.46625 * 0.02562 * 4 3 2 22 22 H 1.07995 * 119.76629 * 180.02562 * 5 4 3 23 23 H 0.96992 * 119.99770 * 179.97438 * 10 9 7 24 24 H 1.34507 * 102.99978 * 269.99606 * 17 16 15 25 25 H 1.08006 * 124.69943 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2560 0.8091 0.9113 5 6 4.6146 0.8344 0.9398 6 6 5.3620 0.0437 0.0472 7 6 6.7628 0.0737 0.0803 8 1 7.3272 -0.8229 -0.1292 9 6 7.4310 1.2668 0.3852 10 7 8.7074 1.2475 0.6680 11 14 6.4982 2.8853 0.3876 12 1 6.0106 3.1736 1.7603 13 1 7.4009 3.9776 -0.0566 14 1 5.3416 2.7915 -0.5390 15 6 4.6580 -0.8188 -0.9258 16 6 5.1921 -1.6788 -1.8973 17 16 6.9280 -1.8772 -2.1243 18 6 4.2970 -2.3364 -2.6395 19 16 2.6639 -1.9051 -2.1631 20 6 3.2623 -0.8130 -0.9193 21 1 2.6985 1.4225 1.6037 22 1 5.1242 1.4660 1.6523 23 1 9.1700 2.0736 0.8787 24 1 7.2246 -0.9304 -3.0325 25 1 4.5441 -3.0336 -3.4264 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396211726.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:20 Heat of formation + Delta-G solvation = 55.640778 kcal Electronic energy + Delta-G solvation = -14269.280682 eV Core-core repulsion = 11850.763756 eV Total energy + Delta-G solvation = -2418.516926 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.16375 -37.47862 -36.36414 -35.42329 -32.64773 -30.28513 -27.66053 -25.02288 -23.45208 -21.86949 -20.09287 -19.86502 -17.98598 -17.45757 -16.79915 -16.55075 -16.03358 -15.22124 -15.07221 -14.93799 -14.78992 -14.05842 -13.72230 -13.63143 -13.44817 -13.09986 -13.00716 -12.57746 -12.45171 -12.01825 -11.71521 -11.64360 -11.43831 -11.06641 -10.13719 -9.36500 -9.23272 -8.85219 -8.35486 -6.55441 -0.17666 0.18578 0.40052 0.75524 1.07125 1.29927 1.41914 1.47196 1.57734 1.87092 1.96716 2.09298 2.24690 2.69383 3.33277 3.39461 4.02321 4.23956 4.47659 4.58614 4.85920 4.95659 5.00916 5.23929 5.44244 5.64061 5.79939 5.89500 6.19560 6.51096 6.59141 6.76982 7.87721 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.018064 B = 0.010730 C = 0.007050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.709632 B = 2608.940820 C = 3970.474579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C 0.291 3.709 3 C -0.188 4.188 4 C 0.017 3.983 5 C -0.269 4.269 6 C 0.118 3.882 7 C -0.386 4.386 8 H 0.126 0.874 9 C 0.055 3.945 10 N -0.779 5.779 11 Si 0.946 3.054 12 H -0.243 1.243 13 H -0.277 1.277 14 H -0.252 1.252 15 C -0.172 4.172 16 C -0.073 4.073 17 S -0.098 6.098 18 C -0.192 4.192 19 S 0.099 5.901 20 C -0.052 4.052 21 H 0.136 0.864 22 H 0.123 0.877 23 H 0.308 0.692 24 H 0.072 0.928 25 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.218 -0.755 -3.261 3.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.188 5.188 2 C -0.018 4.018 3 C -0.201 4.201 4 C -0.006 4.006 5 C -0.290 4.290 6 C 0.111 3.889 7 C -0.411 4.411 8 H 0.143 0.857 9 C -0.169 4.169 10 N -0.400 5.400 11 Si 0.768 3.232 12 H -0.167 1.167 13 H -0.203 1.203 14 H -0.176 1.176 15 C -0.181 4.181 16 C -0.197 4.197 17 S 0.058 5.942 18 C -0.329 4.329 19 S 0.362 5.638 20 C -0.172 4.172 21 H 0.154 0.846 22 H 0.141 0.859 23 H 0.119 0.881 24 H 0.036 0.964 25 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -2.149 -1.462 -3.745 4.558 hybrid contribution 0.942 1.890 0.022 2.112 sum -1.206 0.428 -3.723 3.937 Atomic orbital electron populations 1.81099 1.12700 1.12934 1.12035 1.25917 0.92630 0.91557 0.91715 1.14559 0.82690 1.13603 1.09201 1.20342 0.93906 0.92856 0.93473 1.20520 0.93765 1.09816 1.04866 1.18761 0.92980 0.89062 0.88113 1.20588 0.91410 0.99195 1.29923 0.85656 1.27008 0.95600 1.04101 0.90204 1.69589 1.10928 1.33445 1.26030 0.85728 0.79321 0.76387 0.81726 1.16731 1.20302 1.17593 1.19073 0.90884 1.06700 1.01414 1.19868 0.96414 1.02651 1.00765 1.85432 1.03385 1.47200 1.58188 1.25839 0.93782 1.06951 1.06351 1.83817 1.07164 1.41415 1.31373 1.22442 0.95960 0.99894 0.98903 0.84573 0.85931 0.88052 0.96415 0.78602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -20.76 18.54 19.00 0.35 -20.41 15 2 C 0.29 11.46 15.00 88.33 1.33 12.79 15 3 C -0.19 -7.41 5.78 -20.94 -0.12 -7.53 15 4 C 0.02 0.62 9.58 22.13 0.21 0.84 15 5 C -0.27 -10.69 6.96 22.34 0.16 -10.53 15 6 C 0.12 5.09 5.21 -19.66 -0.10 4.99 15 7 C -0.39 -17.14 8.36 23.19 0.19 -16.95 15 8 H 0.13 5.84 5.59 -7.47 -0.04 5.80 15 9 C 0.06 2.35 5.44 85.31 0.46 2.81 15 10 N -0.78 -33.64 13.92 21.86 0.30 -33.33 15 11 Si 0.95 34.38 24.51 68.60 1.68 36.07 15 12 H -0.24 -8.16 6.72 99.48 0.67 -7.49 15 13 H -0.28 -9.61 7.11 99.48 0.71 -8.91 15 14 H -0.25 -9.77 6.82 99.48 0.68 -9.09 15 15 C -0.17 -7.18 6.02 -19.90 -0.12 -7.30 15 16 C -0.07 -2.74 6.05 21.72 0.13 -2.61 15 17 S -0.10 -3.47 22.33 -56.49 -1.26 -4.73 15 18 C -0.19 -6.10 10.92 66.76 0.73 -5.37 15 19 S 0.10 3.32 22.97 -56.49 -1.30 2.02 15 20 C -0.05 -2.08 6.33 23.28 0.15 -1.93 15 21 H 0.14 4.21 8.06 -2.91 -0.02 4.18 15 22 H 0.12 4.60 4.93 -2.91 -0.01 4.58 15 23 H 0.31 11.77 8.29 -92.71 -0.77 11.00 15 24 H 0.07 2.46 9.07 73.35 0.67 3.13 15 25 H 0.20 4.82 8.06 -2.91 -0.02 4.80 15 Total: -1.00 -47.82 252.58 4.64 -43.18 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: 1.85 Total: 8.00 kcal Atomic # 6 Polarization: -33.80 SS G_CDS: 3.02 Total: -30.79 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: 0.66 Total: -53.74 kcal Atomic # 14 Polarization: 34.38 SS G_CDS: 1.68 Total: 36.07 kcal Atomic # 16 Polarization: -0.15 SS G_CDS: -2.56 Total: -2.71 kcal Total: -47.82 4.64 -43.18 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396211726.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.819 kcal (2) G-P(sol) polarization free energy of solvation -47.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds