Wall clock time and date at job start Mon Mar 30 2020 07:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.35507 * 124.76569 * 26.50241 * 3 2 1 5 5 C 1.39520 * 115.43988 * 179.77264 * 4 3 2 6 6 C 1.40498 * 112.72672 * 0.40414 * 5 4 3 7 7 C 1.38957 * 120.11320 * 179.80692 * 6 5 4 8 8 C 1.40528 * 120.20054 * 359.76356 * 7 6 5 9 9 C 1.40898 * 120.13309 * 180.02562 * 8 7 6 10 10 H 1.08002 * 120.00225 * 154.54676 * 9 8 7 11 11 C 1.39923 * 119.99876 * 334.54979 * 9 8 7 12 12 N 1.30839 * 120.00254 * 342.46659 * 11 9 8 13 13 Si 1.86802 * 120.00308 * 162.46795 * 11 9 8 14 14 H 1.48507 * 109.46736 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47505 * 119.99376 * 13 11 9 16 16 H 1.48495 * 109.47195 * 240.00161 * 13 11 9 17 17 C 1.41050 * 119.73501 * 0.02562 * 8 7 6 18 18 C 1.35931 * 120.32069 * 359.97438 * 17 8 7 19 19 S 1.76202 * 119.64667 * 179.97438 * 18 17 8 20 20 S 1.75475 * 124.76362 * 206.50272 * 3 2 1 21 21 H 1.08004 * 122.27601 * 0.02562 * 4 3 2 22 22 H 1.08003 * 119.90031 * 179.74516 * 7 6 5 23 23 H 0.97001 * 120.00180 * 180.02562 * 12 11 9 24 24 H 1.08010 * 119.83795 * 179.97438 * 17 8 7 25 25 H 1.34502 * 103.00037 * 90.00336 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3412 -0.9952 -0.4967 5 6 4.7178 -0.7900 -0.4003 6 6 5.0429 0.4310 0.2140 7 6 6.3737 0.7891 0.3924 8 6 7.4003 -0.0696 -0.0359 9 6 8.7492 0.2947 0.1461 10 1 9.5102 -0.4685 0.2146 11 6 9.1027 1.6454 0.2382 12 7 8.2737 2.5685 -0.1773 13 14 10.7582 2.1310 0.9545 14 1 11.5046 0.9090 1.3484 15 1 11.5373 2.8808 -0.0634 16 1 10.5487 2.9888 2.1483 17 6 7.0751 -1.2976 -0.6488 18 6 5.7751 -1.6532 -0.8259 19 16 5.3891 -3.1912 -1.5942 20 16 3.5680 1.2912 0.6433 21 1 2.9203 -1.8852 -0.9409 22 1 6.6197 1.7304 0.8613 23 1 8.5190 3.5048 -0.1138 24 1 7.8629 -1.9587 -0.9790 25 1 5.3232 -4.0410 -0.5537 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396212395.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:22 Heat of formation + Delta-G solvation = 50.067649 kcal Electronic energy + Delta-G solvation = -13812.804460 eV Core-core repulsion = 11394.045865 eV Total energy + Delta-G solvation = -2418.758595 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.11262 -37.92052 -36.67594 -34.80293 -31.57135 -31.08561 -27.74913 -24.62820 -23.96938 -21.92690 -20.18175 -19.34857 -18.02246 -17.35914 -16.93591 -16.55717 -15.80107 -15.33607 -15.15207 -14.77853 -14.41119 -14.09029 -14.06456 -13.59008 -13.28905 -13.07467 -12.88091 -12.59552 -12.35024 -11.99048 -11.77489 -11.66214 -11.25843 -10.96189 -10.28355 -9.32907 -9.04208 -8.85118 -8.57148 -6.44321 -0.54107 0.48517 0.51911 0.85898 1.10636 1.18193 1.44167 1.53728 1.60157 1.95908 1.98934 2.15894 2.28614 2.61589 3.02778 3.42056 4.25817 4.39492 4.71279 4.77300 4.93625 5.01881 5.06798 5.23912 5.55372 5.70118 5.75810 5.90710 6.35646 6.44274 6.60937 6.65952 8.06973 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.022169 B = 0.006777 C = 0.005274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.706612 B = 4130.611513 C = 5307.381609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C 0.316 3.684 3 C -0.221 4.221 4 C 0.018 3.982 5 C -0.204 4.204 6 C -0.074 4.074 7 C -0.175 4.175 8 C 0.098 3.902 9 C -0.430 4.430 10 H 0.105 0.895 11 C 0.034 3.966 12 N -0.785 5.785 13 Si 0.987 3.013 14 H -0.249 1.249 15 H -0.265 1.265 16 H -0.266 1.266 17 C -0.135 4.135 18 C -0.034 4.034 19 S -0.135 6.135 20 S 0.092 5.908 21 H 0.159 0.841 22 H 0.114 0.886 23 H 0.300 0.700 24 H 0.135 0.865 25 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.817 -3.134 0.896 4.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.147 5.147 2 C 0.003 3.997 3 C -0.339 4.339 4 C -0.017 4.017 5 C -0.212 4.212 6 C -0.192 4.192 7 C -0.203 4.203 8 C 0.089 3.911 9 C -0.458 4.458 10 H 0.123 0.877 11 C -0.187 4.187 12 N -0.407 5.407 13 Si 0.807 3.193 14 H -0.172 1.172 15 H -0.190 1.190 16 H -0.191 1.191 17 C -0.157 4.157 18 C -0.148 4.148 19 S 0.023 5.977 20 S 0.354 5.646 21 H 0.177 0.823 22 H 0.132 0.868 23 H 0.112 0.888 24 H 0.153 0.847 25 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 0.359 -2.233 0.912 2.439 hybrid contribution 1.428 -0.416 0.828 1.703 sum 1.788 -2.650 1.740 3.639 Atomic orbital electron populations 1.81195 1.11758 1.09343 1.12390 1.24390 0.90916 0.92558 0.91826 1.19066 0.87900 1.04328 1.22571 1.20354 0.90995 0.97303 0.93031 1.17676 0.92492 0.97283 1.13752 1.22711 0.97421 0.97170 1.01874 1.20610 0.88546 1.02791 1.08327 1.17800 0.93894 0.90818 0.88561 1.20221 0.93526 0.93758 1.38252 0.87722 1.26947 1.03432 0.95867 0.92466 1.69840 1.38076 1.03680 1.29150 0.85042 0.76072 0.79602 0.78602 1.17195 1.18988 1.19111 1.21453 0.94748 0.98689 1.00786 1.20644 0.94385 0.96059 1.03720 1.85490 1.94418 1.02875 1.14949 1.83648 0.94030 1.20706 1.66176 0.82340 0.86823 0.88846 0.84733 0.95285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -17.31 18.54 19.00 0.35 -16.95 15 2 C 0.32 11.19 15.77 88.33 1.39 12.59 15 3 C -0.22 -7.88 6.24 22.88 0.14 -7.74 15 4 C 0.02 0.62 9.60 21.95 0.21 0.84 15 5 C -0.20 -8.10 5.86 -21.23 -0.12 -8.23 15 6 C -0.07 -3.14 6.45 22.99 0.15 -2.99 15 7 C -0.18 -7.98 8.71 23.00 0.20 -7.78 15 8 C 0.10 4.37 5.55 -21.38 -0.12 4.25 15 9 C -0.43 -18.35 9.02 23.33 0.21 -18.13 15 10 H 0.10 4.09 7.90 -2.91 -0.02 4.06 15 11 C 0.03 1.38 5.13 85.25 0.44 1.81 15 12 N -0.79 -34.22 10.98 21.82 0.24 -33.98 15 13 Si 0.99 30.63 29.59 68.60 2.03 32.66 15 14 H -0.25 -7.42 7.11 99.48 0.71 -6.71 15 15 H -0.27 -8.04 7.11 99.48 0.71 -7.34 15 16 H -0.27 -8.21 7.11 99.48 0.71 -7.50 15 17 C -0.14 -5.41 9.37 22.42 0.21 -5.20 15 18 C -0.03 -1.29 6.14 22.92 0.14 -1.15 15 19 S -0.13 -4.14 25.07 -56.49 -1.42 -5.56 15 20 S 0.09 3.42 23.23 -56.49 -1.31 2.11 15 21 H 0.16 4.84 7.74 -2.91 -0.02 4.82 15 22 H 0.11 5.42 6.18 -2.91 -0.02 5.40 15 23 H 0.30 11.69 8.30 -92.71 -0.77 10.92 15 24 H 0.13 4.83 8.06 -2.91 -0.02 4.80 15 25 H 0.08 2.30 9.07 73.35 0.67 2.96 15 Total: -1.00 -46.70 263.81 4.67 -42.03 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: 1.93 Total: 11.43 kcal Atomic # 6 Polarization: -34.58 SS G_CDS: 2.85 Total: -31.73 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: 0.59 Total: -50.93 kcal Atomic # 14 Polarization: 30.63 SS G_CDS: 2.03 Total: 32.66 kcal Atomic # 16 Polarization: -0.72 SS G_CDS: -2.73 Total: -3.45 kcal Total: -46.70 4.67 -42.03 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396212395.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.094 kcal (2) G-P(sol) polarization free energy of solvation -46.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds