Wall clock time and date at job start Mon Mar 30 2020 07:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.40328 * 120.08246 * 219.03578 * 3 2 1 5 5 C 1.35604 * 120.38901 * 180.02562 * 4 3 2 6 6 C 1.41894 * 120.75228 * 359.97438 * 5 4 3 7 7 C 1.40513 * 128.16257 * 179.97438 * 6 5 4 8 8 S 1.76203 * 122.68133 * 0.02697 * 7 6 5 9 9 C 1.38228 * 114.63548 * 179.75000 * 7 6 5 10 10 C 1.39305 * 124.86417 * 180.24571 * 9 7 6 11 11 H 1.07999 * 120.00178 * 353.17977 * 10 9 7 12 12 C 1.40133 * 120.00065 * 173.17033 * 10 9 7 13 13 N 1.30846 * 120.00195 * 6.60289 * 12 10 9 14 14 Si 1.86802 * 120.00091 * 186.59557 * 12 10 9 15 15 H 1.48499 * 109.46991 * 94.98949 * 14 12 10 16 16 H 1.48503 * 109.47115 * 214.99060 * 14 12 10 17 17 H 1.48496 * 109.47204 * 334.99197 * 14 12 10 18 18 S 1.75403 * 110.27355 * 0.25277 * 9 7 6 19 19 C 1.40209 * 118.94218 * 0.20130 * 6 5 4 20 20 C 1.39189 * 119.88580 * 0.05544 * 19 6 5 21 21 H 1.08002 * 119.80810 * 359.97438 * 4 3 2 22 22 H 1.07995 * 119.62728 * 179.97438 * 5 4 3 23 23 H 1.40999 * 99.99746 * 269.72869 * 8 7 6 24 24 H 0.96999 * 120.00371 * 179.97438 * 13 12 10 25 25 H 1.08001 * 119.89849 * 180.24053 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2710 0.9441 0.7648 5 6 4.6270 0.9507 0.7689 6 6 5.3595 0.0069 0.0034 7 6 6.7539 -0.1268 -0.1068 8 16 7.8809 0.9259 0.7453 9 6 7.1707 -1.1541 -0.9325 10 6 8.5007 -1.4791 -1.1898 11 1 9.2928 -0.8452 -0.8196 12 6 8.8107 -2.6286 -1.9290 13 7 7.8540 -3.3255 -2.4868 14 14 10.5897 -3.1658 -2.1181 15 1 10.9147 -4.1762 -1.0795 16 1 10.7871 -3.7592 -3.4650 17 1 11.4816 -1.9891 -1.9601 18 16 5.7852 -1.9897 -1.6099 19 6 4.6589 -0.9342 -0.7643 20 6 3.2670 -0.9297 -0.7663 21 1 2.7288 1.6699 1.3528 22 1 5.1555 1.6826 1.3616 23 1 8.0412 1.9434 -0.2175 24 1 8.0686 -4.1210 -2.9987 25 1 2.7271 -1.6570 -1.3545 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396212644.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:13 Heat of formation + Delta-G solvation = 38.098050 kcal Electronic energy + Delta-G solvation = -13806.123345 eV Core-core repulsion = 11386.845710 eV Total energy + Delta-G solvation = -2419.277636 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.59727 -36.11987 -35.23554 -33.33378 -30.27612 -29.63850 -26.25385 -23.05990 -22.12716 -20.15658 -18.55189 -18.02910 -16.21661 -15.77813 -15.33575 -14.58303 -14.37526 -13.50143 -13.33531 -13.24178 -13.00462 -12.65231 -12.31214 -12.06268 -11.88255 -11.81485 -11.58682 -10.97478 -10.75014 -10.62538 -10.50215 -9.91661 -9.49904 -9.33948 -8.70516 -7.76243 -7.61097 -7.01958 -6.72511 -5.17561 1.44421 2.12658 2.37883 2.65495 2.67323 2.75100 2.90611 3.07916 3.27276 3.32588 3.45670 3.75998 4.09341 4.39096 4.66266 4.78804 5.56155 5.63681 6.18462 6.21610 6.26643 6.54753 6.68258 6.84324 7.02494 7.14810 7.31725 7.48714 7.63187 7.82515 7.94017 8.08973 9.18731 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.029281 B = 0.006572 C = 0.005389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.021537 B = 4259.174601 C = 5194.196999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C 0.282 3.718 3 C -0.128 4.128 4 C -0.057 4.057 5 C -0.151 4.151 6 C 0.075 3.925 7 C -0.338 4.338 8 S -0.135 6.135 9 C 0.076 3.924 10 C -0.332 4.332 11 H 0.120 0.880 12 C 0.048 3.952 13 N -0.746 5.746 14 Si 0.945 3.055 15 H -0.258 1.258 16 H -0.268 1.268 17 H -0.250 1.250 18 S 0.153 5.847 19 C -0.266 4.266 20 C 0.008 3.992 21 H 0.113 0.887 22 H 0.122 0.878 23 H 0.042 0.958 24 H 0.310 0.690 25 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.866 -0.098 -0.250 3.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.153 5.153 2 C -0.030 4.030 3 C -0.134 4.134 4 C -0.079 4.079 5 C -0.171 4.171 6 C 0.065 3.935 7 C -0.456 4.456 8 S 0.020 5.980 9 C -0.048 4.048 10 C -0.366 4.366 11 H 0.137 0.863 12 C -0.178 4.178 13 N -0.370 5.370 14 Si 0.766 3.234 15 H -0.182 1.182 16 H -0.192 1.192 17 H -0.173 1.173 18 S 0.412 5.588 19 C -0.382 4.382 20 C -0.017 4.017 21 H 0.131 0.869 22 H 0.140 0.860 23 H 0.007 0.993 24 H 0.123 0.877 25 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.465 -1.067 -0.719 2.781 hybrid contribution 0.596 0.924 -0.368 1.159 sum 3.061 -0.143 -1.087 3.252 Atomic orbital electron populations 1.81132 1.12419 1.10443 1.11278 1.25910 0.92742 0.92240 0.92113 1.15473 0.83260 1.04958 1.09715 1.20218 0.93903 0.96572 0.97238 1.20535 0.92812 1.00911 1.02859 1.18103 0.92022 0.91879 0.91532 1.19506 0.92253 1.11526 1.22354 1.85851 1.60383 1.25765 1.26042 1.21704 0.96829 0.93309 0.92927 1.19799 0.92808 1.03923 1.20066 0.86255 1.26631 1.02742 0.95519 0.92941 1.68708 1.35389 1.13305 1.19615 0.85606 0.78192 0.80378 0.79190 1.18199 1.19237 1.17311 1.84962 0.92242 1.33010 1.48597 1.23334 0.97393 1.06981 1.10466 1.20173 0.91504 0.95190 0.94873 0.86870 0.86028 0.99310 0.87674 0.86859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -9.15 18.54 41.83 0.78 -8.38 15 2 C 0.28 5.13 15.33 -22.47 -0.34 4.79 15 3 C -0.13 -2.32 5.74 -106.78 -0.61 -2.94 15 4 C -0.06 -1.00 9.66 -39.74 -0.38 -1.38 15 5 C -0.15 -2.89 9.69 -39.13 -0.38 -3.27 15 6 C 0.07 1.62 5.86 -106.90 -0.63 0.99 15 7 C -0.34 -7.62 6.22 -38.73 -0.24 -7.86 15 8 S -0.14 -2.73 24.42 -107.50 -2.63 -5.35 15 9 C 0.08 1.73 6.12 -39.19 -0.24 1.49 15 10 C -0.33 -7.17 8.90 -38.47 -0.34 -7.51 15 11 H 0.12 2.49 7.17 -52.49 -0.38 2.11 15 12 C 0.05 0.94 5.49 -17.26 -0.09 0.84 15 13 N -0.75 -14.96 10.61 55.56 0.59 -14.37 15 14 Si 0.94 14.64 29.57 -169.99 -5.03 9.61 15 15 H -0.26 -3.99 7.11 56.52 0.40 -3.59 15 16 H -0.27 -4.04 7.11 56.52 0.40 -3.63 15 17 H -0.25 -3.86 7.11 56.52 0.40 -3.46 15 18 S 0.15 3.29 20.13 -107.50 -2.16 1.13 15 19 C -0.27 -5.63 6.43 -38.49 -0.25 -5.87 15 20 C 0.01 0.15 9.77 -38.82 -0.38 -0.23 15 21 H 0.11 1.68 8.06 -52.49 -0.42 1.25 15 22 H 0.12 2.16 7.77 -52.49 -0.41 1.76 15 23 H 0.04 0.82 9.55 96.90 0.93 1.74 15 24 H 0.31 5.45 8.30 -40.82 -0.34 5.11 15 25 H 0.11 1.93 8.06 -52.49 -0.42 1.51 15 LS Contribution 262.70 15.07 3.96 3.96 Total: -1.00 -23.33 262.70 -8.22 -31.55 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: 0.16 Total: 2.79 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: -3.89 Total: -20.95 kcal Atomic # 7 Polarization: -24.11 SS G_CDS: 1.37 Total: -22.75 kcal Atomic # 14 Polarization: 14.64 SS G_CDS: -5.03 Total: 9.61 kcal Atomic # 16 Polarization: 0.57 SS G_CDS: -4.79 Total: -4.22 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -23.33 -8.22 -31.55 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396212644.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.651 kcal (2) G-P(sol) polarization free energy of solvation -23.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds