Wall clock time and date at job start Mon Mar 30 2020 07:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.40328 * 120.08246 * 219.03578 * 3 2 1 5 5 C 1.35604 * 120.38901 * 180.02562 * 4 3 2 6 6 C 1.41894 * 120.75228 * 359.97438 * 5 4 3 7 7 C 1.40513 * 128.16257 * 179.97438 * 6 5 4 8 8 S 1.76203 * 122.68133 * 0.02697 * 7 6 5 9 9 C 1.38228 * 114.63548 * 179.75000 * 7 6 5 10 10 C 1.39305 * 124.86417 * 180.24571 * 9 7 6 11 11 H 1.07999 * 120.00178 * 353.17977 * 10 9 7 12 12 C 1.40133 * 120.00065 * 173.17033 * 10 9 7 13 13 N 1.30846 * 120.00195 * 6.60289 * 12 10 9 14 14 Si 1.86802 * 120.00091 * 186.59557 * 12 10 9 15 15 H 1.48499 * 109.46991 * 94.98949 * 14 12 10 16 16 H 1.48503 * 109.47115 * 214.99060 * 14 12 10 17 17 H 1.48496 * 109.47204 * 334.99197 * 14 12 10 18 18 S 1.75403 * 110.27355 * 0.25277 * 9 7 6 19 19 C 1.40209 * 118.94218 * 0.20130 * 6 5 4 20 20 C 1.39189 * 119.88580 * 0.05544 * 19 6 5 21 21 H 1.08002 * 119.80810 * 359.97438 * 4 3 2 22 22 H 1.07995 * 119.62728 * 179.97438 * 5 4 3 23 23 H 1.40999 * 99.99746 * 269.72869 * 8 7 6 24 24 H 0.96999 * 120.00371 * 179.97438 * 13 12 10 25 25 H 1.08001 * 119.89849 * 180.24053 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2710 0.9441 0.7648 5 6 4.6270 0.9507 0.7689 6 6 5.3595 0.0069 0.0034 7 6 6.7539 -0.1268 -0.1068 8 16 7.8809 0.9259 0.7453 9 6 7.1707 -1.1541 -0.9325 10 6 8.5007 -1.4791 -1.1898 11 1 9.2928 -0.8452 -0.8196 12 6 8.8107 -2.6286 -1.9290 13 7 7.8540 -3.3255 -2.4868 14 14 10.5897 -3.1658 -2.1181 15 1 10.9147 -4.1762 -1.0795 16 1 10.7871 -3.7592 -3.4650 17 1 11.4816 -1.9891 -1.9601 18 16 5.7852 -1.9897 -1.6099 19 6 4.6589 -0.9342 -0.7643 20 6 3.2670 -0.9297 -0.7663 21 1 2.7288 1.6699 1.3528 22 1 5.1555 1.6826 1.3616 23 1 8.0412 1.9434 -0.2175 24 1 8.0686 -4.1210 -2.9987 25 1 2.7271 -1.6570 -1.3545 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396212644.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:13 Heat of formation + Delta-G solvation = 28.944667 kcal Electronic energy + Delta-G solvation = -13806.520266 eV Core-core repulsion = 11386.845710 eV Total energy + Delta-G solvation = -2419.674556 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.11818 -37.64653 -36.77144 -34.86649 -31.77508 -31.20540 -27.81718 -24.60024 -23.65293 -21.70398 -20.08815 -19.58372 -17.76579 -17.22709 -16.92308 -16.11500 -15.79596 -15.01908 -14.82475 -14.69580 -14.51196 -14.17890 -13.79603 -13.58098 -13.37783 -13.22807 -13.06871 -12.47126 -12.19319 -12.00420 -11.93261 -11.44205 -11.01794 -10.95371 -10.24858 -9.34850 -9.09773 -8.59917 -8.34172 -6.79070 -0.08496 0.62448 0.86760 1.11079 1.35907 1.46854 1.57465 1.63105 1.76758 1.83631 2.10505 2.24130 2.48198 2.83925 3.15287 3.24038 4.10415 4.25619 4.67274 4.72453 4.77849 5.02764 5.16146 5.31012 5.50154 5.62648 5.77792 5.91395 6.08201 6.26239 6.34857 6.61073 7.74097 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.029281 B = 0.006572 C = 0.005389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.021537 B = 4259.174601 C = 5194.196999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C 0.298 3.702 3 C -0.120 4.120 4 C -0.045 4.045 5 C -0.158 4.158 6 C 0.055 3.945 7 C -0.372 4.372 8 S -0.119 6.119 9 C 0.049 3.951 10 C -0.351 4.351 11 H 0.120 0.880 12 C 0.018 3.982 13 N -0.765 5.765 14 Si 1.011 2.989 15 H -0.255 1.255 16 H -0.257 1.257 17 H -0.249 1.249 18 S 0.138 5.862 19 C -0.283 4.283 20 C 0.006 3.994 21 H 0.147 0.853 22 H 0.133 0.867 23 H 0.041 0.959 24 H 0.321 0.679 25 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.004 -0.041 -0.078 4.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.166 5.166 2 C -0.014 4.014 3 C -0.127 4.127 4 C -0.067 4.067 5 C -0.177 4.177 6 C 0.045 3.955 7 C -0.490 4.490 8 S 0.036 5.964 9 C -0.074 4.074 10 C -0.384 4.384 11 H 0.138 0.862 12 C -0.206 4.206 13 N -0.389 5.389 14 Si 0.828 3.172 15 H -0.179 1.179 16 H -0.181 1.181 17 H -0.173 1.173 18 S 0.396 5.604 19 C -0.399 4.399 20 C -0.019 4.019 21 H 0.164 0.836 22 H 0.151 0.849 23 H 0.006 0.994 24 H 0.135 0.865 25 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.575 -1.003 -0.546 2.817 hybrid contribution 0.456 0.915 -0.416 1.104 sum 3.031 -0.088 -0.962 3.182 Atomic orbital electron populations 1.81163 1.12811 1.10908 1.11712 1.25712 0.92384 0.91722 0.91598 1.15526 0.83214 1.04672 1.09240 1.20530 0.93384 0.96406 0.96424 1.20699 0.93487 1.00751 1.02812 1.18388 0.92074 0.92778 0.92300 1.19819 0.93283 1.12500 1.23419 1.85599 1.60069 1.25206 1.25521 1.22021 0.97651 0.94019 0.93726 1.20071 0.92523 1.04968 1.20831 0.86207 1.27461 1.06464 0.94729 0.91955 1.68711 1.37092 1.13707 1.19432 0.84679 0.73190 0.79831 0.79499 1.17916 1.18122 1.17252 1.84751 0.92612 1.33706 1.49286 1.23461 0.98133 1.07237 1.11048 1.20361 0.90865 0.95680 0.95022 0.83580 0.84896 0.99411 0.86465 0.85318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -17.73 18.54 19.00 0.35 -17.38 15 2 C 0.30 10.12 15.33 88.33 1.35 11.48 15 3 C -0.12 -4.12 5.74 -21.26 -0.12 -4.24 15 4 C -0.05 -1.48 9.66 22.17 0.21 -1.26 15 5 C -0.16 -5.81 9.69 22.57 0.22 -5.59 15 6 C 0.05 2.36 5.86 -21.34 -0.13 2.23 15 7 C -0.37 -16.96 6.22 22.82 0.14 -16.82 15 8 S -0.12 -4.77 24.42 -56.49 -1.38 -6.15 15 9 C 0.05 2.27 6.12 22.52 0.14 2.41 15 10 C -0.35 -15.28 8.90 22.99 0.20 -15.08 15 11 H 0.12 5.04 7.17 -2.91 -0.02 5.02 15 12 C 0.02 0.69 5.49 85.30 0.47 1.16 15 13 N -0.77 -30.57 10.61 21.87 0.23 -30.33 15 14 Si 1.01 28.90 29.57 68.60 2.03 30.92 15 15 H -0.25 -7.16 7.11 99.48 0.71 -6.45 15 16 H -0.26 -6.88 7.11 99.48 0.71 -6.17 15 17 H -0.25 -7.05 7.11 99.48 0.71 -6.34 15 18 S 0.14 6.05 20.13 -56.49 -1.14 4.91 15 19 C -0.28 -11.97 6.43 22.98 0.15 -11.82 15 20 C 0.01 0.22 9.77 22.76 0.22 0.44 15 21 H 0.15 3.77 8.06 -2.91 -0.02 3.75 15 22 H 0.13 4.53 7.77 -2.91 -0.02 4.50 15 23 H 0.04 1.59 9.55 73.80 0.70 2.30 15 24 H 0.32 11.09 8.30 -92.71 -0.77 10.32 15 25 H 0.13 4.25 8.06 -2.91 -0.02 4.22 15 Total: -1.00 -48.90 262.70 4.92 -43.98 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: 1.97 Total: 11.14 kcal Atomic # 6 Polarization: -39.96 SS G_CDS: 2.86 Total: -37.09 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: 0.58 Total: -47.71 kcal Atomic # 14 Polarization: 28.90 SS G_CDS: 2.03 Total: 30.92 kcal Atomic # 16 Polarization: 1.28 SS G_CDS: -2.52 Total: -1.24 kcal Total: -48.90 4.92 -43.98 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396212644.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.923 kcal (2) G-P(sol) polarization free energy of solvation -48.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds