Wall clock time and date at job start Mon Mar 30 2020 07:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.42410 * 120.04537 * 241.09190 * 3 2 1 5 5 C 1.45086 * 129.00187 * 359.97438 * 4 3 2 6 6 C 1.32042 * 114.91176 * 179.97438 * 5 4 3 7 7 S 1.75288 * 111.32238 * 0.02562 * 6 5 4 8 8 C 1.39652 * 119.03590 * 179.97438 * 4 3 2 9 9 C 1.41338 * 120.25671 * 359.75234 * 8 4 3 10 10 S 1.76198 * 119.52137 * 180.30232 * 9 8 4 11 11 C 1.37536 * 120.95824 * 0.51563 * 9 8 4 12 12 C 1.40744 * 120.08768 * 359.48216 * 11 9 8 13 13 C 1.40643 * 120.12419 * 180.23177 * 12 11 9 14 14 H 1.07997 * 119.99534 * 154.39200 * 13 12 11 15 15 C 1.40177 * 120.00017 * 334.39625 * 13 12 11 16 16 N 1.30699 * 120.00084 * 342.53500 * 15 13 12 17 17 Si 1.86793 * 119.99829 * 162.53472 * 15 13 12 18 18 H 1.48503 * 109.47237 * 94.63687 * 17 15 13 19 19 H 1.48499 * 109.47452 * 214.63769 * 17 15 13 20 20 H 1.48505 * 109.47166 * 334.64010 * 17 15 13 21 21 H 1.07997 * 122.54824 * 359.97438 * 5 4 3 22 22 H 1.07998 * 124.34041 * 180.02562 * 6 5 4 23 23 H 1.34504 * 102.99456 * 90.00178 * 10 9 8 24 24 H 1.08008 * 119.95277 * 179.74427 * 11 9 8 25 25 H 0.96995 * 119.99911 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2807 0.5969 1.0791 5 6 2.7616 1.2521 2.2650 6 6 3.6809 1.7100 3.0949 7 16 5.2968 1.3816 2.5002 8 6 4.6770 0.5851 1.0579 9 6 5.3678 -0.0158 -0.0189 10 16 7.1298 -0.0267 -0.0220 11 6 4.6847 -0.5883 -1.0663 12 6 3.2773 -0.5921 -1.0729 13 6 2.5780 -1.1816 -2.1412 14 1 1.5778 -1.5593 -1.9888 15 6 3.1793 -1.2791 -3.4037 16 7 4.2196 -0.5418 -3.6908 17 14 2.4938 -2.4628 -4.6758 18 1 1.5488 -1.7409 -5.5653 19 1 3.6077 -3.0197 -5.4848 20 1 1.7799 -3.5689 -3.9887 21 1 1.7036 1.3573 2.4546 22 1 3.4649 2.2213 4.0213 23 1 7.4263 -1.1746 0.6132 24 1 5.2291 -1.0395 -1.8828 25 1 4.6354 -0.6089 -4.5645 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396212741.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:41 Heat of formation + Delta-G solvation = 57.262823 kcal Electronic energy + Delta-G solvation = -14130.035213 eV Core-core repulsion = 11711.588624 eV Total energy + Delta-G solvation = -2418.446589 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -38.53093 -35.43137 -35.14954 -33.29146 -30.56515 -28.76997 -26.08022 -22.88452 -22.60654 -20.10910 -18.45363 -17.64550 -16.99181 -15.84691 -15.37460 -14.98851 -14.10032 -13.84623 -13.35202 -13.20887 -12.80749 -12.23757 -12.05145 -11.86061 -11.76970 -11.53037 -11.30240 -11.07611 -11.00490 -10.56581 -10.39954 -10.01587 -9.85851 -9.44814 -8.55127 -7.76780 -7.64532 -7.42085 -7.08487 -4.91430 1.30143 1.85974 2.24187 2.37661 2.72063 2.79799 2.83577 2.89515 3.09081 3.34075 3.56982 3.85165 3.90368 4.29619 5.13891 5.28747 5.35954 5.82896 6.08545 6.19114 6.44538 6.57127 6.66520 6.80246 6.94830 7.05406 7.27138 7.51564 7.86455 8.15372 8.22430 8.74370 9.54679 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.020647 B = 0.008470 C = 0.006124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.776256 B = 3305.126125 C = 4570.784538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C 0.302 3.698 3 C -0.158 4.158 4 C 0.010 3.990 5 C -0.125 4.125 6 C -0.205 4.205 7 S 0.062 5.938 8 C -0.198 4.198 9 C -0.049 4.049 10 S -0.149 6.149 11 C -0.046 4.046 12 C 0.140 3.860 13 C -0.416 4.416 14 H 0.093 0.907 15 C 0.072 3.928 16 N -0.756 5.756 17 Si 0.919 3.081 18 H -0.263 1.263 19 H -0.267 1.267 20 H -0.254 1.254 21 H 0.130 0.870 22 H 0.155 0.845 23 H 0.064 0.936 24 H 0.147 0.853 25 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.791 -0.184 3.447 5.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.184 5.184 2 C -0.007 4.007 3 C -0.168 4.168 4 C -0.001 4.001 5 C -0.157 4.157 6 C -0.340 4.340 7 S 0.323 5.677 8 C -0.317 4.317 9 C -0.165 4.165 10 S 0.009 5.991 11 C -0.069 4.069 12 C 0.131 3.869 13 C -0.443 4.443 14 H 0.111 0.889 15 C -0.152 4.152 16 N -0.377 5.377 17 Si 0.741 3.259 18 H -0.187 1.187 19 H -0.192 1.192 20 H -0.177 1.177 21 H 0.147 0.853 22 H 0.173 0.827 23 H 0.028 0.972 24 H 0.165 0.835 25 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.602 0.410 3.734 6.745 hybrid contribution -2.073 -1.525 -0.619 2.647 sum 3.528 -1.114 3.115 4.837 Atomic orbital electron populations 1.81023 1.12530 1.13687 1.11173 1.25554 0.92486 0.91469 0.91236 1.15664 0.83350 1.16427 1.01338 1.18639 0.90973 0.97242 0.93230 1.20897 0.99802 1.01046 0.93978 1.24952 0.96920 1.07972 1.04106 1.83646 1.06387 1.61260 1.16379 1.21963 0.95059 1.13896 1.00741 1.20219 0.92378 1.06533 0.97410 1.85678 1.04039 1.31622 1.77752 1.21902 0.93995 0.96091 0.94960 1.17204 0.90995 0.88054 0.90607 1.19829 1.01965 1.29707 0.92828 0.88902 1.26186 0.94004 0.94817 1.00194 1.69678 1.16165 1.28508 1.23362 0.86072 0.79884 0.80579 0.79369 1.18750 1.19185 1.17746 0.85262 0.82730 0.97160 0.83512 0.89139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -11.91 18.54 41.84 0.78 -11.14 15 2 C 0.30 6.99 13.66 -22.48 -0.31 6.69 15 3 C -0.16 -3.61 5.88 -105.08 -0.62 -4.23 15 4 C 0.01 0.22 5.99 -105.05 -0.63 -0.41 15 5 C -0.12 -2.30 9.95 -38.79 -0.39 -2.69 15 6 C -0.21 -3.31 11.03 28.81 0.32 -3.00 15 7 S 0.06 1.07 22.85 -107.50 -2.46 -1.39 15 8 C -0.20 -4.10 6.37 -37.88 -0.24 -4.34 15 9 C -0.05 -1.02 6.13 -38.66 -0.24 -1.26 15 10 S -0.15 -2.69 25.40 -107.50 -2.73 -5.42 15 11 C -0.05 -1.02 8.33 -38.89 -0.32 -1.35 15 12 C 0.14 3.25 5.57 -106.75 -0.59 2.66 15 13 C -0.42 -9.58 8.44 -37.95 -0.32 -9.90 15 14 H 0.09 2.16 7.25 -52.49 -0.38 1.78 15 15 C 0.07 1.53 5.13 -17.31 -0.09 1.45 15 16 N -0.76 -16.27 10.99 55.56 0.61 -15.66 15 17 Si 0.92 16.14 29.59 -169.99 -5.03 11.11 15 18 H -0.26 -4.67 7.11 56.52 0.40 -4.27 15 19 H -0.27 -4.50 7.11 56.52 0.40 -4.10 15 20 H -0.25 -4.53 7.11 56.52 0.40 -4.13 15 21 H 0.13 2.24 8.03 -52.49 -0.42 1.81 15 22 H 0.16 1.96 8.06 -52.49 -0.42 1.54 15 23 H 0.06 1.06 9.07 97.61 0.89 1.95 15 24 H 0.15 3.22 6.20 -52.48 -0.33 2.90 15 25 H 0.30 5.70 8.29 -40.82 -0.34 5.36 15 LS Contribution 262.07 15.07 3.95 3.95 Total: -1.00 -23.96 262.07 -8.11 -32.07 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: 0.20 Total: 2.85 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: -3.43 Total: -16.38 kcal Atomic # 7 Polarization: -28.18 SS G_CDS: 1.39 Total: -26.80 kcal Atomic # 14 Polarization: 16.14 SS G_CDS: -5.03 Total: 11.11 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -5.19 Total: -6.81 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -23.96 -8.11 -32.07 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396212741.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.335 kcal (2) G-P(sol) polarization free energy of solvation -23.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds