Wall clock time and date at job start Mon Mar 30 2020 07:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.42410 * 120.04537 * 241.09190 * 3 2 1 5 5 C 1.45086 * 129.00187 * 359.97438 * 4 3 2 6 6 C 1.32042 * 114.91176 * 179.97438 * 5 4 3 7 7 S 1.75288 * 111.32238 * 0.02562 * 6 5 4 8 8 C 1.39652 * 119.03590 * 179.97438 * 4 3 2 9 9 C 1.41338 * 120.25671 * 359.75234 * 8 4 3 10 10 S 1.76198 * 119.52137 * 180.30232 * 9 8 4 11 11 C 1.37536 * 120.95824 * 0.51563 * 9 8 4 12 12 C 1.40744 * 120.08768 * 359.48216 * 11 9 8 13 13 C 1.40643 * 120.12419 * 180.23177 * 12 11 9 14 14 H 1.07997 * 119.99534 * 154.39200 * 13 12 11 15 15 C 1.40177 * 120.00017 * 334.39625 * 13 12 11 16 16 N 1.30699 * 120.00084 * 342.53500 * 15 13 12 17 17 Si 1.86793 * 119.99829 * 162.53472 * 15 13 12 18 18 H 1.48503 * 109.47237 * 94.63687 * 17 15 13 19 19 H 1.48499 * 109.47452 * 214.63769 * 17 15 13 20 20 H 1.48505 * 109.47166 * 334.64010 * 17 15 13 21 21 H 1.07997 * 122.54824 * 359.97438 * 5 4 3 22 22 H 1.07998 * 124.34041 * 180.02562 * 6 5 4 23 23 H 1.34504 * 102.99456 * 90.00178 * 10 9 8 24 24 H 1.08008 * 119.95277 * 179.74427 * 11 9 8 25 25 H 0.96995 * 119.99911 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2807 0.5969 1.0791 5 6 2.7616 1.2521 2.2650 6 6 3.6809 1.7100 3.0949 7 16 5.2968 1.3816 2.5002 8 6 4.6770 0.5851 1.0579 9 6 5.3678 -0.0158 -0.0189 10 16 7.1298 -0.0267 -0.0220 11 6 4.6847 -0.5883 -1.0663 12 6 3.2773 -0.5921 -1.0729 13 6 2.5780 -1.1816 -2.1412 14 1 1.5778 -1.5593 -1.9888 15 6 3.1793 -1.2791 -3.4037 16 7 4.2196 -0.5418 -3.6908 17 14 2.4938 -2.4628 -4.6758 18 1 1.5488 -1.7409 -5.5653 19 1 3.6077 -3.0197 -5.4848 20 1 1.7799 -3.5689 -3.9887 21 1 1.7036 1.3573 2.4546 22 1 3.4649 2.2213 4.0213 23 1 7.4263 -1.1746 0.6132 24 1 5.2291 -1.0395 -1.8828 25 1 4.6354 -0.6089 -4.5645 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396212741.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:41 Heat of formation + Delta-G solvation = 46.953803 kcal Electronic energy + Delta-G solvation = -14130.482246 eV Core-core repulsion = 11711.588624 eV Total energy + Delta-G solvation = -2418.893621 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 3.18 seconds Orbital eigenvalues (eV) -40.13440 -37.08246 -36.86732 -34.85803 -32.23051 -30.34297 -27.73308 -24.48033 -24.17929 -21.63622 -20.05272 -19.22966 -18.55194 -17.39273 -16.90092 -16.52803 -15.60895 -15.41518 -14.94753 -14.75541 -14.33675 -13.90193 -13.72339 -13.58725 -13.33362 -13.11387 -12.76297 -12.65757 -12.50706 -12.10648 -11.89896 -11.52996 -11.40474 -11.01017 -10.13146 -9.34689 -9.09996 -9.00208 -8.58224 -6.62460 -0.29386 0.33333 0.71632 0.93983 1.26885 1.33041 1.38377 1.51298 1.60838 1.82510 2.05658 2.11474 2.25405 2.58648 3.42764 3.61038 3.93756 4.39525 4.54368 4.73100 4.83275 5.02583 5.12652 5.20043 5.30906 5.47801 5.64795 5.87035 6.14327 6.46524 6.53736 6.94031 7.97676 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.020647 B = 0.008470 C = 0.006124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.776256 B = 3305.126125 C = 4570.784538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C 0.308 3.692 3 C -0.185 4.185 4 C 0.000 4.000 5 C -0.153 4.153 6 C -0.177 4.177 7 S 0.104 5.896 8 C -0.224 4.224 9 C -0.054 4.054 10 S -0.131 6.131 11 C -0.064 4.064 12 C 0.124 3.876 13 C -0.443 4.443 14 H 0.079 0.921 15 C 0.045 3.955 16 N -0.775 5.775 17 Si 0.981 3.019 18 H -0.264 1.264 19 H -0.249 1.249 20 H -0.261 1.261 21 H 0.136 0.864 22 H 0.199 0.801 23 H 0.080 0.920 24 H 0.143 0.857 25 H 0.308 0.692 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.988 0.153 4.289 7.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.205 5.205 2 C -0.001 4.001 3 C -0.195 4.195 4 C -0.012 4.012 5 C -0.185 4.185 6 C -0.311 4.311 7 S 0.365 5.635 8 C -0.342 4.342 9 C -0.170 4.170 10 S 0.027 5.973 11 C -0.087 4.087 12 C 0.116 3.884 13 C -0.470 4.470 14 H 0.097 0.903 15 C -0.178 4.178 16 N -0.397 5.397 17 Si 0.800 3.200 18 H -0.188 1.188 19 H -0.173 1.173 20 H -0.184 1.184 21 H 0.154 0.846 22 H 0.215 0.785 23 H 0.045 0.955 24 H 0.160 0.840 25 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.814 0.759 4.586 8.249 hybrid contribution -2.320 -1.554 -0.752 2.892 sum 4.494 -0.795 3.834 5.961 Atomic orbital electron populations 1.80989 1.12857 1.14714 1.11932 1.25736 0.92666 0.90984 0.90715 1.15880 0.83174 1.17944 1.02513 1.18974 0.91537 0.96969 0.93713 1.20933 1.00778 1.02870 0.93932 1.25460 0.95783 1.05396 1.04486 1.83478 1.06391 1.59802 1.13784 1.22362 0.95334 1.14302 1.02223 1.20462 0.94282 1.05335 0.96958 1.85511 1.01295 1.32367 1.78118 1.21821 0.93583 0.97608 0.95724 1.17462 0.91866 0.88186 0.90910 1.19931 1.01843 1.31138 0.94131 0.90280 1.26822 0.94129 0.95755 1.01064 1.69671 1.16657 1.28950 1.24430 0.85177 0.79551 0.78277 0.76997 1.18824 1.17283 1.18446 0.84617 0.78451 0.95545 0.83965 0.87967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -25.40 18.54 19.00 0.35 -25.05 15 2 C 0.31 14.69 13.66 88.33 1.21 15.89 15 3 C -0.19 -8.72 5.88 -20.16 -0.12 -8.84 15 4 C 0.00 -0.01 5.99 -20.14 -0.12 -0.13 15 5 C -0.15 -5.42 9.95 23.09 0.23 -5.19 15 6 C -0.18 -5.10 11.03 66.89 0.74 -4.36 15 7 S 0.10 3.28 22.85 -56.49 -1.29 1.99 15 8 C -0.22 -9.06 6.37 23.37 0.15 -8.91 15 9 C -0.05 -2.24 6.13 22.87 0.14 -2.10 15 10 S -0.13 -4.51 25.40 -56.49 -1.43 -5.94 15 11 C -0.06 -2.89 8.33 22.72 0.19 -2.70 15 12 C 0.12 5.97 5.57 -21.25 -0.12 5.85 15 13 C -0.44 -21.16 8.44 23.33 0.20 -20.97 15 14 H 0.08 3.87 7.25 -2.91 -0.02 3.85 15 15 C 0.04 1.93 5.13 85.33 0.44 2.37 15 16 N -0.78 -33.60 10.99 21.87 0.24 -33.36 15 17 Si 0.98 33.02 29.59 68.60 2.03 35.05 15 18 H -0.26 -8.86 7.11 99.48 0.71 -8.15 15 19 H -0.25 -7.63 7.11 99.48 0.71 -6.92 15 20 H -0.26 -8.97 7.11 99.48 0.71 -8.27 15 21 H 0.14 4.56 8.03 -2.91 -0.02 4.53 15 22 H 0.20 3.96 8.06 -2.91 -0.02 3.94 15 23 H 0.08 2.49 9.07 73.35 0.67 3.16 15 24 H 0.14 6.38 6.20 -2.91 -0.02 6.36 15 25 H 0.31 11.71 8.29 -92.71 -0.77 10.94 15 Total: -1.00 -51.71 262.07 4.76 -46.96 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: 1.93 Total: 9.45 kcal Atomic # 6 Polarization: -32.03 SS G_CDS: 2.93 Total: -29.10 kcal Atomic # 7 Polarization: -59.00 SS G_CDS: 0.59 Total: -58.41 kcal Atomic # 14 Polarization: 33.02 SS G_CDS: 2.03 Total: 35.05 kcal Atomic # 16 Polarization: -1.23 SS G_CDS: -2.73 Total: -3.95 kcal Total: -51.71 4.76 -46.96 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396212741.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.910 kcal (2) G-P(sol) polarization free energy of solvation -51.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.18 seconds