Wall clock time and date at job start Mon Mar 30 2020 07:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.40275 * 120.00034 * 35.10120 * 3 2 1 5 5 C 1.37199 * 120.08999 * 180.29954 * 4 3 2 6 6 C 1.40016 * 120.72982 * 359.92724 * 5 4 3 7 7 S 1.75930 * 129.66819 * 180.02562 * 6 5 4 8 8 C 1.75199 * 92.64982 * 179.97438 * 7 6 5 9 9 C 1.39544 * 124.58823 * 179.97438 * 8 7 6 10 10 H 1.07996 * 119.99617 * 179.97438 * 9 8 7 11 11 C 1.39936 * 120.00081 * 359.97438 * 9 8 7 12 12 N 1.30987 * 120.00280 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 120.00140 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46977 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47061 * 119.99763 * 13 11 9 16 16 H 1.48498 * 109.47136 * 239.99668 * 13 11 9 17 17 C 1.37866 * 110.82048 * 359.97438 * 8 7 6 18 18 S 1.76206 * 123.12587 * 180.02562 * 17 8 7 19 19 C 1.40109 * 119.85107 * 0.06489 * 6 5 4 20 20 C 1.38675 * 119.99582 * 215.36950 * 3 2 1 21 21 H 1.07993 * 119.95254 * 0.24826 * 4 3 2 22 22 H 1.08001 * 119.63358 * 179.97438 * 5 4 3 23 23 H 0.97000 * 120.00349 * 179.97438 * 12 11 9 24 24 H 1.40997 * 100.00248 * 269.97893 * 18 17 8 25 25 H 1.07998 * 119.87915 * 359.72394 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2699 -0.9929 -0.6985 5 6 4.6418 -0.9976 -0.6947 6 6 5.3587 -0.0164 0.0007 7 16 7.0970 0.2014 0.1625 8 6 6.9072 1.6257 1.1650 9 6 7.9634 2.3685 1.6941 10 1 7.7608 3.2364 2.3041 11 6 9.2850 1.9888 1.4344 12 7 9.5307 0.9358 0.6950 13 14 10.6989 2.9827 2.1432 14 1 10.1585 4.1152 2.9374 15 1 11.5251 2.1133 3.0187 16 1 11.5369 3.5101 1.0365 17 6 5.5730 1.9131 1.3604 18 16 5.0132 3.2807 2.3202 19 6 4.6720 0.9827 0.7030 20 6 3.2609 0.9803 0.6952 21 1 2.7295 -1.7556 -1.2394 22 1 5.1747 -1.7663 -1.2347 23 1 10.4467 0.6728 0.5146 24 1 4.9290 2.6714 3.5889 25 1 2.7185 1.7444 1.2322 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396212773.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:59 Heat of formation + Delta-G solvation = 29.988018 kcal Electronic energy + Delta-G solvation = -13800.727927 eV Core-core repulsion = 11381.098614 eV Total energy + Delta-G solvation = -2419.629313 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.03154 -37.61209 -36.73280 -34.70889 -31.87713 -31.08107 -27.42409 -25.05193 -23.29810 -22.13655 -19.91849 -19.10503 -17.91924 -17.64516 -16.59394 -16.11563 -15.78761 -15.08615 -14.91750 -14.71321 -14.45071 -14.13817 -13.81015 -13.59721 -13.45012 -13.23253 -13.14944 -12.43668 -12.06415 -11.99802 -11.91060 -11.51425 -11.04556 -10.91227 -10.18401 -9.38171 -9.01988 -8.62160 -8.29245 -6.75440 -0.05873 0.33021 0.95102 1.18051 1.37150 1.46546 1.57694 1.63691 1.67219 1.84988 2.09699 2.13269 2.52833 2.86250 2.96601 3.18152 4.11474 4.23833 4.64309 4.69545 4.85220 4.89497 5.22640 5.31308 5.49276 5.55041 5.71711 5.96493 6.09502 6.24237 6.44402 6.47765 7.82758 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.032397 B = 0.006469 C = 0.005409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.067675 B = 4327.122092 C = 5175.050773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C 0.291 3.709 3 C -0.030 4.030 4 C -0.114 4.114 5 C -0.063 4.063 6 C -0.234 4.234 7 S 0.158 5.842 8 C 0.049 3.951 9 C -0.377 4.377 10 H 0.113 0.887 11 C 0.021 3.979 12 N -0.779 5.779 13 Si 1.007 2.993 14 H -0.254 1.254 15 H -0.258 1.258 16 H -0.255 1.255 17 C -0.378 4.378 18 S -0.123 6.123 19 C 0.006 3.994 20 C -0.088 4.088 21 H 0.155 0.845 22 H 0.146 0.854 23 H 0.319 0.681 24 H 0.033 0.967 25 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.184 -1.978 -1.105 3.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.145 5.145 2 C -0.023 4.023 3 C -0.036 4.036 4 C -0.137 4.137 5 C -0.085 4.085 6 C -0.351 4.351 7 S 0.418 5.582 8 C -0.073 4.073 9 C -0.410 4.410 10 H 0.131 0.869 11 C -0.200 4.200 12 N -0.404 5.404 13 Si 0.825 3.175 14 H -0.177 1.177 15 H -0.182 1.182 16 H -0.180 1.180 17 C -0.497 4.497 18 S 0.032 5.968 19 C -0.004 4.004 20 C -0.111 4.111 21 H 0.173 0.827 22 H 0.164 0.836 23 H 0.133 0.867 24 H -0.001 1.001 25 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.539 -2.020 -1.409 3.537 hybrid contribution -0.050 -0.062 1.152 1.154 sum 2.489 -2.082 -0.258 3.255 Atomic orbital electron populations 1.81171 1.12718 1.09932 1.10666 1.25787 0.92530 0.91998 0.91989 1.15674 0.83267 0.99913 1.04787 1.20875 0.93284 0.98573 1.00945 1.20510 0.93247 0.96866 0.97919 1.24236 1.03332 1.01315 1.06192 1.84736 0.94357 1.26268 1.52873 1.21886 0.95252 0.95595 0.94552 1.19928 0.89716 1.09128 1.22202 0.86930 1.27308 1.03503 0.95817 0.93416 1.68636 1.26289 1.20335 1.25145 0.84702 0.75087 0.78526 0.79161 1.17686 1.18176 1.17952 1.20532 0.92618 1.10800 1.25755 1.85595 1.88279 1.16712 1.06228 1.18931 0.92647 0.93377 0.95458 1.20905 0.92123 0.98214 0.99844 0.82692 0.83590 0.86731 1.00123 0.85955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -16.54 18.54 19.00 0.35 -16.18 15 2 C 0.29 9.63 15.31 88.33 1.35 10.98 15 3 C -0.03 -1.02 5.72 -21.43 -0.12 -1.14 15 4 C -0.11 -3.39 9.74 22.52 0.22 -3.17 15 5 C -0.06 -2.05 10.04 22.46 0.23 -1.82 15 6 C -0.23 -9.53 6.44 23.16 0.15 -9.38 15 7 S 0.16 6.82 19.99 -56.49 -1.13 5.69 15 8 C 0.05 2.36 6.11 22.50 0.14 2.49 15 9 C -0.38 -17.14 8.92 23.00 0.21 -16.94 15 10 H 0.11 5.06 7.14 -2.91 -0.02 5.04 15 11 C 0.02 0.86 5.50 85.23 0.47 1.33 15 12 N -0.78 -31.76 10.54 21.84 0.23 -31.53 15 13 Si 1.01 30.45 29.56 68.60 2.03 32.48 15 14 H -0.25 -7.75 7.11 99.48 0.71 -7.05 15 15 H -0.26 -7.42 7.11 99.48 0.71 -6.71 15 16 H -0.26 -7.34 7.11 99.48 0.71 -6.63 15 17 C -0.38 -17.77 6.38 23.98 0.15 -17.61 15 18 S -0.12 -5.26 24.72 -56.49 -1.40 -6.66 15 19 C 0.01 0.25 6.01 -20.32 -0.12 0.12 15 20 C -0.09 -3.39 9.55 23.08 0.22 -3.17 15 21 H 0.16 3.48 8.06 -2.91 -0.02 3.45 15 22 H 0.15 3.87 8.06 -2.91 -0.02 3.84 15 23 H 0.32 11.25 8.30 -92.71 -0.77 10.48 15 24 H 0.03 1.40 9.55 73.80 0.70 2.10 15 25 H 0.12 4.62 7.96 -2.91 -0.02 4.60 15 Total: -1.00 -50.33 263.46 4.94 -45.39 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: 1.97 Total: 9.12 kcal Atomic # 6 Polarization: -41.20 SS G_CDS: 2.89 Total: -38.31 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: 0.58 Total: -47.72 kcal Atomic # 14 Polarization: 30.45 SS G_CDS: 2.03 Total: 32.48 kcal Atomic # 16 Polarization: 1.56 SS G_CDS: -2.53 Total: -0.96 kcal Total: -50.33 4.94 -45.39 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396212773.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.377 kcal (2) G-P(sol) polarization free energy of solvation -50.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds