Wall clock time and date at job start Mon Mar 30 2020 07:24:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13602 * 1
3 3 C 1.43202 * 179.97438 * 2 1
4 4 C 1.37235 * 123.09886 * 201.24942 * 3 2 1
5 5 S 1.76202 * 124.54280 * 0.02562 * 4 3 2
6 6 S 1.75185 * 110.91708 * 179.97438 * 4 3 2
7 7 C 1.75916 * 92.64386 * 0.02562 * 6 4 3
8 8 C 1.38889 * 129.65834 * 180.02562 * 7 6 4
9 9 C 1.40400 * 120.13095 * 179.14768 * 8 7 6
10 10 C 1.40975 * 120.19389 * 180.26408 * 9 8 7
11 11 H 1.07999 * 120.00057 * 330.59472 * 10 9 8
12 12 C 1.39740 * 119.99763 * 150.58665 * 10 9 8
13 13 N 1.30971 * 119.99793 * 161.72200 * 12 10 9
14 14 Si 1.86796 * 120.00398 * 341.72040 * 12 10 9
15 15 H 1.48502 * 109.47323 * 95.41711 * 14 12 10
16 16 H 1.48493 * 109.47236 * 215.42068 * 14 12 10
17 17 H 1.48510 * 109.47044 * 335.42333 * 14 12 10
18 18 C 1.41188 * 119.61185 * 0.75835 * 9 8 7
19 19 C 1.35350 * 120.16524 * 359.53334 * 18 9 8
20 20 C 1.40007 * 110.49881 * 359.72488 * 7 6 4
21 21 H 1.40999 * 100.00187 * 89.99804 * 5 4 3
22 22 H 1.07994 * 119.93336 * 359.97438 * 8 7 6
23 23 H 0.96999 * 120.00473 * 180.02562 * 13 12 10
24 24 H 1.08002 * 119.91359 * 179.50558 * 18 9 8
25 25 H 1.07998 * 119.56211 * 179.97438 * 19 18 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.5680 0.0006 0.0000
4 6 3.3170 1.0725 0.4167
5 16 2.6460 2.5907 1.0079
6 16 5.0295 0.7284 0.2834
7 6 4.7388 -0.8884 -0.3458
8 6 5.6468 -1.8681 -0.7262
9 6 5.1888 -3.1113 -1.1908
10 6 6.1094 -4.1087 -1.5720
11 1 7.0763 -3.8297 -1.9640
12 6 5.7708 -5.4582 -1.4424
13 7 6.4407 -6.3679 -2.1050
14 14 4.3630 -5.9649 -0.3240
15 1 3.1204 -6.1049 -1.1249
16 1 4.6855 -7.2632 0.3205
17 1 4.1639 -4.9291 0.7214
18 6 3.8009 -3.3531 -1.2839
19 6 2.9176 -2.3950 -0.9183
20 6 3.3644 -1.1392 -0.4371
21 1 2.5535 2.2981 2.3841
22 1 6.7073 -1.6780 -0.6519
23 1 6.2055 -7.3047 -2.0154
24 1 3.4433 -4.3049 -1.6483
25 1 1.8581 -2.5902 -0.9940
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000396212990.mol2 25
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:24:53
Heat of formation + Delta-G solvation = 61.206902 kcal
Electronic energy + Delta-G solvation = -13875.520797 eV
Core-core repulsion = 11457.245236 eV
Total energy + Delta-G solvation = -2418.275561 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 260.998 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-38.72788 -36.58086 -34.83862 -33.32381 -30.31059 -29.81356 -25.59705 -24.19699
-21.75761 -21.22037 -18.49166 -17.76700 -16.57431 -16.52310 -15.55138 -14.99165
-14.38227 -13.99984 -13.52961 -13.32097 -13.11474 -12.95788 -12.60555 -12.53358
-12.12005 -11.58732 -11.41589 -11.12461 -11.08183 -10.50800 -10.48595 -10.05959
-9.84003 -9.47350 -8.94510 -8.07361 -7.86060 -7.46474 -7.21523 -4.89502
0.62691 1.63237 2.09683 2.13339 2.29894 2.45735 2.71825 2.81867
2.95220 2.96815 3.01445 3.58804 3.63632 4.09655 4.33867 4.93025
5.38874 5.72102 5.91676 6.03915 6.26724 6.39144 6.49446 6.85577
7.04544 7.10382 7.35624 7.51178 7.70850 7.81541 8.12300 8.24911
9.52144
Molecular weight = 261.00amu
Principal moments of inertia in cm(-1)
A = 0.032155 B = 0.006257 C = 0.005445
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 870.570597 B = 4473.959801 C = 5141.164878
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.421 5.421
2 C 0.281 3.719
3 C 0.072 3.928
4 C -0.225 4.225
5 S -0.087 6.087
6 S 0.103 5.897
7 C -0.054 4.054
8 C -0.203 4.203
9 C 0.106 3.894
10 C -0.398 4.398
11 H 0.103 0.897
12 C 0.078 3.922
13 N -0.772 5.772
14 Si 0.911 3.089
15 H -0.263 1.263
16 H -0.282 1.282
17 H -0.238 1.238
18 C -0.199 4.199
19 C -0.035 4.035
20 C -0.190 4.190
21 H 0.087 0.913
22 H 0.113 0.887
23 H 0.295 0.705
24 H 0.113 0.887
25 H 0.103 0.897
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.582 5.764 3.971 7.176
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.098 5.098
2 C -0.036 4.036
3 C 0.051 3.949
4 C -0.457 4.457
5 S 0.068 5.932
6 S 0.368 5.632
7 C -0.171 4.171
8 C -0.231 4.231
9 C 0.099 3.901
10 C -0.425 4.425
11 H 0.121 0.879
12 C -0.146 4.146
13 N -0.393 5.393
14 Si 0.736 3.264
15 H -0.188 1.188
16 H -0.208 1.208
17 H -0.161 1.161
18 C -0.218 4.218
19 C -0.055 4.055
20 C -0.197 4.197
21 H 0.052 0.948
22 H 0.131 0.869
23 H 0.106 0.894
24 H 0.131 0.869
25 H 0.122 0.878
Dipole moment (debyes) X Y Z Total
from point charges -2.308 7.311 4.322 8.801
hybrid contribution -0.934 -2.353 0.561 2.593
sum -3.241 4.958 4.883 7.676
Atomic orbital electron populations
1.81135 1.11706 1.08484 1.08465 1.25165 0.92053 0.92746 0.93631
1.16630 0.84150 0.93731 1.00429 1.24861 0.99552 1.00643 1.20615
1.86576 1.82395 1.14523 1.09698 1.83779 1.01498 1.09137 1.68785
1.22165 0.95952 0.96624 1.02350 1.20216 0.96961 0.94236 1.11641
1.17604 0.91608 0.92577 0.88275 1.19713 1.02594 0.89474 1.30723
0.87892 1.26376 0.97350 0.96432 0.94477 1.69720 1.36023 1.03799
1.29750 0.86295 0.79765 0.78873 0.81493 1.18824 1.20825 1.16127
1.20818 0.93826 0.99438 1.07708 1.20233 0.98209 0.91373 0.95721
1.18046 0.90570 0.94716 1.16343 0.94836 0.86907 0.89369 0.86917
0.87848
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.42 -7.83 18.54 41.84 0.78 -7.05 15
2 C 0.28 5.07 14.76 -22.47 -0.33 4.74 15
3 C 0.07 1.30 5.90 -105.34 -0.62 0.68 15
4 C -0.23 -3.80 6.78 30.37 0.21 -3.60 15
5 S -0.09 -1.26 25.58 -107.50 -2.75 -4.01 15
6 S 0.10 1.72 23.19 -107.50 -2.49 -0.77 15
7 C -0.05 -1.06 6.39 -38.68 -0.25 -1.31 15
8 C -0.20 -4.17 9.81 -38.53 -0.38 -4.55 15
9 C 0.11 2.32 5.09 -106.93 -0.54 1.78 15
10 C -0.40 -9.10 9.54 -37.98 -0.36 -9.47 15
11 H 0.10 2.44 8.06 -52.49 -0.42 2.02 15
12 C 0.08 1.73 5.40 -17.36 -0.09 1.64 15
13 N -0.77 -17.57 13.93 55.54 0.77 -16.80 15
14 Si 0.91 17.74 24.51 -169.99 -4.17 13.57 15
15 H -0.26 -4.94 6.70 56.52 0.38 -4.56 15
16 H -0.28 -5.31 7.11 56.52 0.40 -4.91 15
17 H -0.24 -4.80 6.87 56.52 0.39 -4.41 15
18 C -0.20 -4.15 7.07 -39.49 -0.28 -4.43 15
19 C -0.03 -0.69 9.74 -39.28 -0.38 -1.07 15
20 C -0.19 -3.74 6.02 -104.91 -0.63 -4.37 15
21 H 0.09 1.12 9.55 96.90 0.93 2.05 15
22 H 0.11 2.17 8.06 -52.49 -0.42 1.75 15
23 H 0.30 6.01 8.30 -40.82 -0.34 5.67 15
24 H 0.11 2.28 4.73 -52.49 -0.25 2.03 15
25 H 0.10 1.85 8.01 -52.49 -0.42 1.43 15
LS Contribution 259.61 15.07 3.91 3.91
Total: -1.00 -22.66 259.61 -7.37 -30.03
By element:
Atomic # 1 Polarization: 0.83 SS G_CDS: 0.24 Total: 1.07 kcal
Atomic # 6 Polarization: -16.29 SS G_CDS: -3.67 Total: -19.95 kcal
Atomic # 7 Polarization: -25.40 SS G_CDS: 1.55 Total: -23.85 kcal
Atomic # 14 Polarization: 17.74 SS G_CDS: -4.17 Total: 13.57 kcal
Atomic # 16 Polarization: 0.46 SS G_CDS: -5.24 Total: -4.78 kcal
Total LS contribution 3.91 Total: 3.91 kcal
Total: -22.66 -7.37 -30.03 kcal
The number of atoms in the molecule is 25
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000396212990.mol2 25
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 91.239 kcal
(2) G-P(sol) polarization free energy of solvation -22.659 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.579 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.372 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.032 kcal
(6) G-S(sol) free energy of system = (1) + (5) 61.207 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds