Wall clock time and date at job start Mon Mar 30 2020 07:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.37235 * 123.09886 * 201.24942 * 3 2 1 5 5 S 1.76202 * 124.54280 * 0.02562 * 4 3 2 6 6 S 1.75185 * 110.91708 * 179.97438 * 4 3 2 7 7 C 1.75916 * 92.64386 * 0.02562 * 6 4 3 8 8 C 1.38889 * 129.65834 * 180.02562 * 7 6 4 9 9 C 1.40400 * 120.13095 * 179.14768 * 8 7 6 10 10 C 1.40975 * 120.19389 * 180.26408 * 9 8 7 11 11 H 1.07999 * 120.00057 * 330.59472 * 10 9 8 12 12 C 1.39740 * 119.99763 * 150.58665 * 10 9 8 13 13 N 1.30971 * 119.99793 * 161.72200 * 12 10 9 14 14 Si 1.86796 * 120.00398 * 341.72040 * 12 10 9 15 15 H 1.48502 * 109.47323 * 95.41711 * 14 12 10 16 16 H 1.48493 * 109.47236 * 215.42068 * 14 12 10 17 17 H 1.48510 * 109.47044 * 335.42333 * 14 12 10 18 18 C 1.41188 * 119.61185 * 0.75835 * 9 8 7 19 19 C 1.35350 * 120.16524 * 359.53334 * 18 9 8 20 20 C 1.40007 * 110.49881 * 359.72488 * 7 6 4 21 21 H 1.40999 * 100.00187 * 89.99804 * 5 4 3 22 22 H 1.07994 * 119.93336 * 359.97438 * 8 7 6 23 23 H 0.96999 * 120.00473 * 180.02562 * 13 12 10 24 24 H 1.08002 * 119.91359 * 179.50558 * 18 9 8 25 25 H 1.07998 * 119.56211 * 179.97438 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3170 1.0725 0.4167 5 16 2.6460 2.5907 1.0079 6 16 5.0295 0.7284 0.2834 7 6 4.7388 -0.8884 -0.3458 8 6 5.6468 -1.8681 -0.7262 9 6 5.1888 -3.1113 -1.1908 10 6 6.1094 -4.1087 -1.5720 11 1 7.0763 -3.8297 -1.9640 12 6 5.7708 -5.4582 -1.4424 13 7 6.4407 -6.3679 -2.1050 14 14 4.3630 -5.9649 -0.3240 15 1 3.1204 -6.1049 -1.1249 16 1 4.6855 -7.2632 0.3205 17 1 4.1639 -4.9291 0.7214 18 6 3.8009 -3.3531 -1.2839 19 6 2.9176 -2.3950 -0.9183 20 6 3.3644 -1.1392 -0.4371 21 1 2.5535 2.2981 2.3841 22 1 6.7073 -1.6780 -0.6519 23 1 6.2055 -7.3047 -2.0154 24 1 3.4433 -4.3049 -1.6483 25 1 1.8581 -2.5902 -0.9940 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396212990.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:52 Heat of formation + Delta-G solvation = 51.123484 kcal Electronic energy + Delta-G solvation = -13875.958046 eV Core-core repulsion = 11457.245236 eV Total energy + Delta-G solvation = -2418.712811 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = -0.87 seconds Orbital eigenvalues (eV) -40.28656 -38.05702 -36.37424 -34.89064 -31.89298 -31.37982 -27.17704 -25.70046 -23.30748 -22.80604 -20.02665 -19.25159 -18.06322 -17.92016 -17.06976 -16.47433 -15.91987 -15.49066 -15.02714 -14.83818 -14.60077 -14.45780 -14.07995 -14.07817 -13.60013 -13.10063 -12.92494 -12.68346 -12.49806 -12.06248 -11.97192 -11.58594 -11.36027 -11.01919 -10.47057 -9.42694 -9.26175 -9.07101 -8.67571 -6.58155 -0.78442 0.25080 0.52834 0.68557 0.74780 0.98156 1.25859 1.40349 1.47022 1.51383 1.54980 2.03277 2.14447 2.53176 2.89490 3.29265 3.85695 4.18854 4.40269 4.47538 4.68356 4.82911 4.92837 5.28347 5.44960 5.51167 5.71112 5.92362 6.14413 6.29229 6.50326 6.60712 7.98218 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.032155 B = 0.006257 C = 0.005445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.570597 B = 4473.959801 C = 5141.164878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C 0.290 3.710 3 C 0.052 3.948 4 C -0.204 4.204 5 S -0.074 6.074 6 S 0.165 5.835 7 C -0.077 4.077 8 C -0.212 4.212 9 C 0.099 3.901 10 C -0.442 4.442 11 H 0.075 0.925 12 C 0.053 3.947 13 N -0.817 5.817 14 Si 0.954 3.046 15 H -0.251 1.251 16 H -0.272 1.272 17 H -0.249 1.249 18 C -0.209 4.209 19 C -0.039 4.039 20 C -0.186 4.186 21 H 0.116 0.884 22 H 0.117 0.883 23 H 0.302 0.698 24 H 0.116 0.884 25 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.265 8.267 5.559 10.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.107 5.107 2 C -0.027 4.027 3 C 0.031 3.969 4 C -0.435 4.435 5 S 0.081 5.919 6 S 0.431 5.569 7 C -0.194 4.194 8 C -0.239 4.239 9 C 0.092 3.908 10 C -0.471 4.471 11 H 0.093 0.907 12 C -0.166 4.166 13 N -0.440 5.440 14 Si 0.776 3.224 15 H -0.176 1.176 16 H -0.198 1.198 17 H -0.173 1.173 18 C -0.228 4.228 19 C -0.060 4.060 20 C -0.193 4.193 21 H 0.081 0.919 22 H 0.135 0.865 23 H 0.113 0.887 24 H 0.134 0.866 25 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.969 9.809 5.901 12.115 hybrid contribution -0.532 -2.580 0.249 2.646 sum -4.501 7.229 6.150 10.504 Atomic orbital electron populations 1.81160 1.11892 1.08696 1.08952 1.25012 0.91805 0.92538 0.93305 1.16512 0.84282 0.93802 1.02344 1.25402 1.00184 1.01035 1.16922 1.86668 1.81900 1.11900 1.11452 1.83713 1.00520 1.06102 1.66604 1.22419 0.95938 0.98411 1.02629 1.20331 0.97561 0.94389 1.11597 1.17712 0.92040 0.92841 0.88171 1.19573 1.02287 0.90604 1.34618 0.90665 1.26859 0.98825 0.96060 0.94902 1.69739 1.38127 1.04348 1.31791 0.85659 0.78272 0.78469 0.79992 1.17583 1.19844 1.17261 1.20902 0.93567 1.00090 1.08243 1.20451 0.99063 0.91194 0.95274 1.18314 0.90961 0.95081 1.14951 0.91937 0.86500 0.88690 0.86636 0.85928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -14.74 18.54 19.00 0.35 -14.39 15 2 C 0.29 9.56 14.76 88.33 1.30 10.87 15 3 C 0.05 1.73 5.90 -20.33 -0.12 1.61 15 4 C -0.20 -6.03 6.78 67.58 0.46 -5.58 15 5 S -0.07 -1.78 25.58 -56.49 -1.44 -3.23 15 6 S 0.17 4.90 23.19 -56.49 -1.31 3.59 15 7 C -0.08 -2.88 6.39 22.85 0.15 -2.73 15 8 C -0.21 -8.74 9.81 22.95 0.23 -8.51 15 9 C 0.10 4.42 5.09 -21.36 -0.11 4.31 15 10 C -0.44 -21.50 9.54 23.30 0.22 -21.28 15 11 H 0.08 3.90 8.06 -2.91 -0.02 3.88 15 12 C 0.05 2.48 5.40 85.18 0.46 2.94 15 13 N -0.82 -39.19 13.93 21.79 0.30 -38.89 15 14 Si 0.95 36.96 24.51 68.60 1.68 38.64 15 15 H -0.25 -9.12 6.70 99.48 0.67 -8.45 15 16 H -0.27 -9.99 7.11 99.48 0.71 -9.28 15 17 H -0.25 -9.94 6.87 99.48 0.68 -9.26 15 18 C -0.21 -8.71 7.07 22.33 0.16 -8.55 15 19 C -0.04 -1.51 9.74 22.46 0.22 -1.29 15 20 C -0.19 -6.92 6.02 -20.05 -0.12 -7.04 15 21 H 0.12 2.34 9.55 73.80 0.70 3.04 15 22 H 0.12 4.58 8.06 -2.91 -0.02 4.56 15 23 H 0.30 12.89 8.30 -92.71 -0.77 12.12 15 24 H 0.12 4.67 4.73 -2.91 -0.01 4.66 15 25 H 0.12 4.13 8.01 -2.91 -0.02 4.11 15 Total: -1.00 -48.47 259.61 4.33 -44.14 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: 1.91 Total: 5.39 kcal Atomic # 6 Polarization: -38.09 SS G_CDS: 2.84 Total: -35.25 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: 0.66 Total: -53.27 kcal Atomic # 14 Polarization: 36.96 SS G_CDS: 1.68 Total: 38.64 kcal Atomic # 16 Polarization: 3.12 SS G_CDS: -2.75 Total: 0.36 kcal Total: -48.47 4.33 -44.14 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396212990.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.259 kcal (2) G-P(sol) polarization free energy of solvation -48.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.87 seconds