Wall clock time and date at job start Mon Mar 30 2020 07:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.40215 * 120.14998 * 236.70367 * 3 2 1 5 5 C 1.35865 * 120.32378 * 180.22939 * 4 3 2 6 6 C 1.41121 * 120.89119 * 359.83057 * 5 4 3 7 7 C 1.46547 * 129.25401 * 179.97438 * 6 5 4 8 8 C 1.40857 * 123.28238 * 0.04240 * 7 6 5 9 9 H 1.08003 * 120.00471 * 22.36923 * 8 7 6 10 10 C 1.39694 * 119.99716 * 202.37167 * 8 7 6 11 11 N 1.31083 * 120.00068 * 11.08426 * 10 8 7 12 12 Si 1.86798 * 120.00039 * 191.08473 * 10 8 7 13 13 H 1.48505 * 109.46950 * 59.99717 * 12 10 8 14 14 H 1.48498 * 109.47198 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47178 * 300.00106 * 12 10 8 16 16 C 1.36552 * 113.42985 * 180.02562 * 7 6 5 17 17 S 1.69986 * 111.89524 * 359.97438 * 16 7 6 18 18 C 1.39183 * 119.52575 * 0.02562 * 6 5 4 19 19 C 1.40009 * 120.15630 * 56.54069 * 3 2 1 20 20 S 1.76205 * 120.03920 * 359.97438 * 19 3 2 21 21 H 1.07997 * 119.83488 * 0.05867 * 4 3 2 22 22 H 1.08003 * 119.55586 * 179.80800 * 5 4 3 23 23 H 0.96998 * 119.99972 * 179.97438 * 11 10 8 24 24 H 1.07997 * 124.05315 * 179.97438 * 16 7 6 25 25 H 1.34498 * 102.99854 * 269.72398 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2719 0.6666 1.0134 5 6 4.6306 0.6734 1.0143 6 6 5.3591 0.0112 0.0032 7 6 6.8096 -0.0983 -0.1742 8 6 7.7422 0.4848 0.7058 9 1 7.4530 0.7233 1.7187 10 6 9.0411 0.7547 0.2683 11 7 9.3339 0.6717 -1.0067 12 14 10.3609 1.2339 1.5004 13 1 10.5354 0.1399 2.4894 14 1 11.6429 1.4652 0.7876 15 1 9.9537 2.4767 2.2037 16 6 7.1689 -0.8210 -1.2756 17 16 5.8141 -1.3905 -2.1298 18 6 4.6759 -0.6572 -1.0086 19 6 3.2716 -0.6665 -1.0100 20 16 2.3962 -1.5105 -2.2852 21 1 2.7315 1.1789 1.7956 22 1 5.1602 1.1928 1.7992 23 1 10.2357 0.8595 -1.3104 24 1 8.1913 -1.0084 -1.5689 25 1 2.2524 -2.7502 -1.7840 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396213112.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:31 Heat of formation + Delta-G solvation = 62.917242 kcal Electronic energy + Delta-G solvation = -13912.529009 eV Core-core repulsion = 11494.327615 eV Total energy + Delta-G solvation = -2418.201395 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -39.06244 -36.46385 -34.96195 -32.54607 -30.81464 -28.89707 -26.27575 -23.50362 -22.52739 -20.07906 -19.11655 -17.56453 -16.55033 -16.26156 -15.20695 -15.00187 -14.66797 -13.97725 -13.60230 -13.27818 -13.13084 -12.65014 -12.44822 -11.95410 -11.75527 -11.58414 -11.19596 -11.15467 -10.78364 -10.63617 -10.22322 -10.13081 -9.58532 -9.38356 -8.81835 -7.99698 -7.69059 -7.00615 -6.79412 -4.48120 0.76878 1.45687 1.82309 2.50520 2.79391 2.91652 3.00954 3.01676 3.03317 3.09177 3.59614 3.72216 3.87392 4.14607 4.23300 5.09939 5.26599 5.44863 5.67115 5.90846 6.05481 6.37188 6.58834 6.72291 7.02489 7.09469 7.49043 7.69725 7.79033 8.25157 8.59146 8.71774 10.14414 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.031497 B = 0.006395 C = 0.005380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.769071 B = 4377.213249 C = 5203.262313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C 0.271 3.729 3 C 0.004 3.996 4 C -0.111 4.111 5 C -0.045 4.045 6 C -0.041 4.041 7 C 0.074 3.926 8 C -0.433 4.433 9 H 0.078 0.922 10 C 0.069 3.931 11 N -0.797 5.797 12 Si 0.914 3.086 13 H -0.265 1.265 14 H -0.279 1.279 15 H -0.266 1.266 16 C -0.351 4.351 17 S 0.100 5.900 18 C -0.124 4.124 19 C -0.034 4.034 20 S -0.130 6.130 21 H 0.132 0.868 22 H 0.135 0.865 23 H 0.280 0.720 24 H 0.168 0.832 25 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.797 -1.224 1.701 4.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.102 5.102 2 C -0.044 4.044 3 C -0.005 4.005 4 C -0.137 4.137 5 C -0.065 4.065 6 C -0.055 4.055 7 C 0.065 3.935 8 C -0.466 4.466 9 H 0.096 0.904 10 C -0.148 4.148 11 N -0.423 5.423 12 Si 0.739 3.261 13 H -0.190 1.190 14 H -0.204 1.204 15 H -0.190 1.190 16 C -0.488 4.488 17 S 0.367 5.633 18 C -0.243 4.243 19 C -0.155 4.155 20 S 0.028 5.972 21 H 0.150 0.850 22 H 0.153 0.847 23 H 0.091 0.909 24 H 0.185 0.815 25 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -5.822 -2.337 -0.626 6.305 hybrid contribution 1.902 0.729 2.910 3.552 sum -3.920 -1.608 2.284 4.814 Atomic orbital electron populations 1.81136 1.11855 1.08642 1.08594 1.25450 0.92422 0.93533 0.93009 1.16046 0.83895 1.03226 0.97307 1.20462 0.94069 1.01206 0.97951 1.20725 0.92596 0.96123 0.97087 1.19995 0.95065 0.96599 0.93810 1.17328 0.87147 0.94156 0.94826 1.18930 0.94384 1.35101 0.98172 0.90406 1.25779 0.99570 0.93859 0.95599 1.69814 1.21257 1.36683 1.14572 0.86256 0.79284 0.79827 0.80736 1.18959 1.20364 1.19038 1.24721 1.01050 1.15874 1.07131 1.82238 0.95076 1.56899 1.29128 1.22857 0.94917 1.05215 1.01320 1.20397 0.92736 1.04338 0.98054 1.85881 1.73571 1.11800 1.25936 0.85048 0.84730 0.90890 0.81491 0.95852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -7.28 18.54 41.83 0.78 -6.51 15 2 C 0.27 4.38 14.25 -22.47 -0.32 4.06 15 3 C 0.00 0.06 5.76 -106.56 -0.61 -0.55 15 4 C -0.11 -1.65 9.67 -39.69 -0.38 -2.04 15 5 C -0.05 -0.78 9.77 -39.34 -0.38 -1.16 15 6 C -0.04 -0.84 6.03 -105.10 -0.63 -1.48 15 7 C 0.07 1.75 5.69 -106.17 -0.60 1.15 15 8 C -0.43 -10.31 9.06 -38.05 -0.34 -10.66 15 9 H 0.08 1.72 7.65 -52.48 -0.40 1.32 15 10 C 0.07 1.59 5.36 -17.33 -0.09 1.50 15 11 N -0.80 -19.38 10.79 55.54 0.60 -18.78 15 12 Si 0.91 17.51 29.57 -169.99 -5.03 12.48 15 13 H -0.26 -5.05 7.11 56.52 0.40 -4.65 15 14 H -0.28 -5.29 7.11 56.52 0.40 -4.89 15 15 H -0.27 -5.01 7.11 56.52 0.40 -4.60 15 16 C -0.35 -8.29 9.52 30.12 0.29 -8.01 15 17 S 0.10 2.03 22.59 -107.50 -2.43 -0.40 15 18 C -0.12 -2.47 6.32 -38.41 -0.24 -2.71 15 19 C -0.03 -0.61 6.19 -38.09 -0.24 -0.84 15 20 S -0.13 -2.11 24.42 -107.50 -2.63 -4.74 15 21 H 0.13 1.54 8.06 -52.49 -0.42 1.11 15 22 H 0.13 2.06 7.84 -52.48 -0.41 1.65 15 23 H 0.28 6.28 8.30 -40.82 -0.34 5.94 15 24 H 0.17 4.22 6.26 -52.49 -0.33 3.89 15 25 H 0.08 1.15 9.07 97.61 0.89 2.04 15 LS Contribution 262.02 15.07 3.95 3.95 Total: -1.00 -24.79 262.02 -8.14 -32.93 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: 0.19 Total: 1.80 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: -3.57 Total: -20.74 kcal Atomic # 7 Polarization: -26.66 SS G_CDS: 1.37 Total: -25.29 kcal Atomic # 14 Polarization: 17.51 SS G_CDS: -5.03 Total: 12.48 kcal Atomic # 16 Polarization: -0.08 SS G_CDS: -5.05 Total: -5.14 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -24.79 -8.14 -32.93 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396213112.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.843 kcal (2) G-P(sol) polarization free energy of solvation -24.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds