Wall clock time and date at job start Mon Mar 30 2020 07:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.40215 * 120.14998 * 236.70367 * 3 2 1 5 5 C 1.35865 * 120.32378 * 180.22939 * 4 3 2 6 6 C 1.41121 * 120.89119 * 359.83057 * 5 4 3 7 7 C 1.46547 * 129.25401 * 179.97438 * 6 5 4 8 8 C 1.40857 * 123.28238 * 0.04240 * 7 6 5 9 9 H 1.08003 * 120.00471 * 22.36923 * 8 7 6 10 10 C 1.39694 * 119.99716 * 202.37167 * 8 7 6 11 11 N 1.31083 * 120.00068 * 11.08426 * 10 8 7 12 12 Si 1.86798 * 120.00039 * 191.08473 * 10 8 7 13 13 H 1.48505 * 109.46950 * 59.99717 * 12 10 8 14 14 H 1.48498 * 109.47198 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47178 * 300.00106 * 12 10 8 16 16 C 1.36552 * 113.42985 * 180.02562 * 7 6 5 17 17 S 1.69986 * 111.89524 * 359.97438 * 16 7 6 18 18 C 1.39183 * 119.52575 * 0.02562 * 6 5 4 19 19 C 1.40009 * 120.15630 * 56.54069 * 3 2 1 20 20 S 1.76205 * 120.03920 * 359.97438 * 19 3 2 21 21 H 1.07997 * 119.83488 * 0.05867 * 4 3 2 22 22 H 1.08003 * 119.55586 * 179.80800 * 5 4 3 23 23 H 0.96998 * 119.99972 * 179.97438 * 11 10 8 24 24 H 1.07997 * 124.05315 * 179.97438 * 16 7 6 25 25 H 1.34498 * 102.99854 * 269.72398 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2719 0.6666 1.0134 5 6 4.6306 0.6734 1.0143 6 6 5.3591 0.0112 0.0032 7 6 6.8096 -0.0983 -0.1742 8 6 7.7422 0.4848 0.7058 9 1 7.4530 0.7233 1.7187 10 6 9.0411 0.7547 0.2683 11 7 9.3339 0.6717 -1.0067 12 14 10.3609 1.2339 1.5004 13 1 10.5354 0.1399 2.4894 14 1 11.6429 1.4652 0.7876 15 1 9.9537 2.4767 2.2037 16 6 7.1689 -0.8210 -1.2756 17 16 5.8141 -1.3905 -2.1298 18 6 4.6759 -0.6572 -1.0086 19 6 3.2716 -0.6665 -1.0100 20 16 2.3962 -1.5105 -2.2852 21 1 2.7315 1.1789 1.7956 22 1 5.1602 1.1928 1.7992 23 1 10.2357 0.8595 -1.3104 24 1 8.1913 -1.0084 -1.5689 25 1 2.2524 -2.7502 -1.7840 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396213112.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:30 Heat of formation + Delta-G solvation = 51.715985 kcal Electronic energy + Delta-G solvation = -13913.014732 eV Core-core repulsion = 11494.327615 eV Total energy + Delta-G solvation = -2418.687118 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.49895 -37.88228 -36.53161 -34.17831 -32.20158 -30.46127 -27.99679 -24.98842 -23.97024 -21.70795 -20.49410 -19.03659 -18.11538 -17.83934 -16.69494 -16.48596 -16.10976 -15.34150 -14.93201 -14.72863 -14.68336 -14.12573 -13.84944 -13.40041 -13.27586 -13.15293 -12.74691 -12.68281 -12.26786 -12.20383 -11.71871 -11.61040 -11.20803 -11.02228 -10.28614 -9.30588 -9.25337 -8.65078 -8.49439 -6.26576 -0.63454 0.06955 0.46807 1.00617 1.25748 1.45032 1.55031 1.58231 1.63443 1.73740 1.94474 2.18213 2.27540 2.74823 2.81927 3.37304 3.98985 4.04757 4.29074 4.49350 4.61828 4.99884 5.15965 5.26570 5.36108 5.59081 5.82092 6.00489 6.38875 6.50112 6.84603 6.96989 8.43300 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.031497 B = 0.006395 C = 0.005380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.769071 B = 4377.213249 C = 5203.262313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C 0.285 3.715 3 C 0.016 3.984 4 C -0.085 4.085 5 C -0.045 4.045 6 C -0.067 4.067 7 C 0.054 3.946 8 C -0.460 4.460 9 H 0.089 0.911 10 C 0.026 3.974 11 N -0.831 5.831 12 Si 0.983 3.017 13 H -0.262 1.262 14 H -0.278 1.278 15 H -0.255 1.255 16 C -0.385 4.385 17 S 0.110 5.890 18 C -0.132 4.132 19 C -0.045 4.045 20 S -0.128 6.128 21 H 0.176 0.824 22 H 0.154 0.846 23 H 0.283 0.717 24 H 0.141 0.859 25 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.320 -0.454 3.397 6.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.110 5.110 2 C -0.031 4.031 3 C 0.007 3.993 4 C -0.111 4.111 5 C -0.064 4.064 6 C -0.081 4.081 7 C 0.045 3.955 8 C -0.492 4.492 9 H 0.108 0.892 10 C -0.188 4.188 11 N -0.459 5.459 12 Si 0.805 3.195 13 H -0.187 1.187 14 H -0.203 1.203 15 H -0.180 1.180 16 C -0.522 4.522 17 S 0.375 5.625 18 C -0.251 4.251 19 C -0.166 4.166 20 S 0.030 5.970 21 H 0.194 0.806 22 H 0.171 0.829 23 H 0.093 0.907 24 H 0.159 0.841 25 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -7.369 -1.568 1.073 7.610 hybrid contribution 2.196 0.474 2.385 3.277 sum -5.173 -1.094 3.458 6.318 Atomic orbital electron populations 1.81175 1.12149 1.08830 1.08880 1.25212 0.92023 0.93188 0.92647 1.16157 0.83981 1.02241 0.96882 1.20881 0.93177 0.99212 0.97803 1.20966 0.93444 0.95521 0.96518 1.20104 0.93969 0.98379 0.95615 1.17730 0.89099 0.93831 0.94822 1.19328 0.95250 1.35768 0.98887 0.89245 1.26672 1.01478 0.93481 0.97128 1.69935 1.21816 1.37704 1.16419 0.85206 0.76325 0.79710 0.78254 1.18655 1.20311 1.17952 1.24588 1.01185 1.17787 1.08633 1.81902 0.93977 1.57360 1.29214 1.22947 0.95723 1.05268 1.01134 1.20512 0.92048 1.05026 0.98992 1.85869 1.72730 1.12594 1.25819 0.80632 0.82853 0.90685 0.84129 0.94432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -13.46 18.54 19.00 0.35 -13.10 15 2 C 0.28 8.22 14.25 88.33 1.26 9.47 15 3 C 0.02 0.46 5.76 -21.12 -0.12 0.34 15 4 C -0.09 -2.20 9.67 22.20 0.21 -1.98 15 5 C -0.04 -1.42 9.77 22.43 0.22 -1.20 15 6 C -0.07 -2.76 6.03 -20.18 -0.12 -2.88 15 7 C 0.05 2.63 5.69 -20.87 -0.12 2.51 15 8 C -0.46 -22.18 9.06 23.26 0.21 -21.97 15 9 H 0.09 3.92 7.65 -2.91 -0.02 3.90 15 10 C 0.03 1.21 5.36 85.16 0.46 1.67 15 11 N -0.83 -41.97 10.79 21.79 0.24 -41.74 15 12 Si 0.98 35.90 29.57 68.60 2.03 37.93 15 13 H -0.26 -9.35 7.11 99.48 0.71 -8.65 15 14 H -0.28 -10.00 7.11 99.48 0.71 -9.30 15 15 H -0.26 -8.83 7.11 99.48 0.71 -8.12 15 16 C -0.39 -19.10 9.52 67.43 0.64 -18.45 15 17 S 0.11 4.57 22.59 -56.49 -1.28 3.29 15 18 C -0.13 -5.19 6.32 23.03 0.15 -5.04 15 19 C -0.04 -1.51 6.19 23.23 0.14 -1.36 15 20 S -0.13 -3.94 24.42 -56.49 -1.38 -5.32 15 21 H 0.18 3.05 8.06 -2.91 -0.02 3.03 15 22 H 0.15 4.24 7.84 -2.91 -0.02 4.21 15 23 H 0.28 13.15 8.30 -92.71 -0.77 12.38 15 24 H 0.14 7.61 6.26 -2.91 -0.02 7.59 15 25 H 0.09 2.54 9.07 73.35 0.67 3.20 15 Total: -1.00 -54.41 262.02 4.82 -49.59 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: 1.93 Total: 8.25 kcal Atomic # 6 Polarization: -41.83 SS G_CDS: 2.93 Total: -38.91 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: 0.59 Total: -54.84 kcal Atomic # 14 Polarization: 35.90 SS G_CDS: 2.03 Total: 37.93 kcal Atomic # 16 Polarization: 0.63 SS G_CDS: -2.66 Total: -2.03 kcal Total: -54.41 4.82 -49.59 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396213112.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.310 kcal (2) G-P(sol) polarization free energy of solvation -54.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds