Wall clock time and date at job start Mon Mar 30 2020 07:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39320 * 120.10033 * 133.72363 * 3 2 1 5 5 C 1.39059 * 120.44482 * 180.02562 * 4 3 2 6 6 S 1.76063 * 129.94768 * 179.97438 * 5 4 3 7 7 C 1.75441 * 91.78483 * 180.02562 * 6 5 4 8 8 C 1.39789 * 124.82010 * 179.97438 * 7 6 5 9 9 H 1.07998 * 119.99558 * 173.29553 * 8 7 6 10 10 C 1.40305 * 120.00045 * 353.29512 * 8 7 6 11 11 N 1.30673 * 119.99937 * 6.61004 * 10 8 7 12 12 Si 1.86799 * 119.99977 * 186.60551 * 10 8 7 13 13 H 1.48503 * 109.47152 * 94.98603 * 12 10 8 14 14 H 1.48499 * 109.47063 * 214.99091 * 12 10 8 15 15 H 1.48508 * 109.47026 * 334.98747 * 12 10 8 16 16 C 1.37099 * 110.35684 * 359.97438 * 7 6 5 17 17 C 1.39571 * 115.08560 * 0.02562 * 16 7 6 18 18 C 1.41997 * 128.18643 * 179.97438 * 17 16 7 19 19 C 1.37321 * 120.52772 * 180.02562 * 18 17 16 20 20 S 1.76202 * 119.92908 * 179.97438 * 19 18 17 21 21 H 1.08007 * 119.77646 * 359.97438 * 4 3 2 22 22 H 0.97004 * 119.99683 * 179.97438 * 11 10 8 23 23 H 1.08003 * 122.45730 * 180.02562 * 16 7 6 24 24 H 1.08000 * 119.73395 * 359.74345 * 18 17 16 25 25 H 1.34499 * 103.00343 * 90.00400 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2664 0.8341 -0.8711 5 6 4.6569 0.8401 -0.8775 6 16 5.7788 1.7776 -1.8583 7 6 7.1651 1.0340 -1.0817 8 6 8.4992 1.3218 -1.3841 9 1 9.2920 0.8992 -0.7848 10 6 8.8081 2.1597 -2.4663 11 7 7.8516 2.7737 -3.1111 12 14 10.5867 2.3975 -2.9853 13 1 10.9131 1.4513 -4.0823 14 1 10.7819 3.7913 -3.4592 15 1 11.4792 2.1391 -1.8267 16 6 6.7541 0.1304 -0.1360 17 6 5.3708 0.0024 -0.0015 18 6 4.6491 -0.8427 0.8824 19 6 3.2759 -0.8425 0.8820 20 16 2.3964 -1.8981 1.9851 21 1 2.7240 1.4792 -1.5465 22 1 8.0653 3.3532 -3.8590 23 1 7.4498 -0.4405 0.4612 24 1 5.1846 -1.4941 1.5572 25 1 2.2451 -1.1325 3.0805 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396213183.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:15 Heat of formation + Delta-G solvation = 34.080687 kcal Electronic energy + Delta-G solvation = -13674.878208 eV Core-core repulsion = 11255.426367 eV Total energy + Delta-G solvation = -2419.451842 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.11697 -37.65475 -36.68150 -34.90878 -31.90549 -31.16049 -27.82074 -24.74606 -23.71630 -21.59438 -20.20831 -19.59300 -18.55616 -17.27000 -16.85755 -16.39353 -15.95203 -15.09415 -14.85729 -14.65378 -14.54023 -14.05156 -13.97323 -13.60676 -13.40027 -13.26255 -13.06533 -12.50179 -12.35362 -11.98624 -11.91464 -11.56576 -11.08294 -10.93585 -10.36581 -9.34614 -9.19825 -9.02326 -8.37121 -6.63599 -0.27052 0.15849 0.68084 1.11100 1.28039 1.39510 1.58060 1.64002 1.75732 1.80571 1.88871 2.12463 2.23636 2.82900 3.13405 3.17886 3.94021 4.48150 4.58455 4.71687 4.82961 5.02004 5.15005 5.31261 5.34024 5.51758 5.73970 5.93510 6.05502 6.31516 6.43665 6.61339 7.83739 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.044557 B = 0.005134 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.252113 B = 5453.029233 C = 6061.376126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C 0.295 3.705 3 C -0.104 4.104 4 C 0.013 3.987 5 C -0.281 4.281 6 S 0.144 5.856 7 C 0.026 3.974 8 C -0.380 4.380 9 H 0.114 0.886 10 C 0.018 3.982 11 N -0.780 5.780 12 Si 1.012 2.988 13 H -0.258 1.258 14 H -0.261 1.261 15 H -0.250 1.250 16 C -0.372 4.372 17 C 0.022 3.978 18 C -0.098 4.098 19 C -0.050 4.050 20 S -0.134 6.134 21 H 0.135 0.865 22 H 0.318 0.682 23 H 0.119 0.881 24 H 0.142 0.858 25 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.362 -0.296 0.779 3.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.151 5.151 2 C -0.018 4.018 3 C -0.113 4.113 4 C -0.014 4.014 5 C -0.395 4.395 6 S 0.405 5.595 7 C -0.094 4.094 8 C -0.414 4.414 9 H 0.132 0.868 10 C -0.204 4.204 11 N -0.405 5.405 12 Si 0.830 3.170 13 H -0.183 1.183 14 H -0.185 1.185 15 H -0.173 1.173 16 C -0.395 4.395 17 C 0.011 3.989 18 C -0.121 4.121 19 C -0.167 4.167 20 S 0.024 5.976 21 H 0.153 0.847 22 H 0.132 0.868 23 H 0.137 0.863 24 H 0.160 0.840 25 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 0.900 0.203 -0.076 0.926 hybrid contribution 1.549 0.299 1.071 1.907 sum 2.449 0.501 0.995 2.691 Atomic orbital electron populations 1.81104 1.12395 1.10988 1.10576 1.25443 0.92272 0.91932 0.92191 1.15608 0.83501 1.06228 1.05954 1.20315 0.91114 0.94869 0.95074 1.23695 0.98064 1.09633 1.08134 1.84820 0.93024 1.42183 1.39488 1.21885 0.97519 0.94945 0.95046 1.19924 0.92106 1.20082 1.09240 0.86835 1.27348 1.06174 0.92421 0.94449 1.68608 1.36972 1.18745 1.16206 0.84667 0.73485 0.79150 0.79726 1.18271 1.18503 1.17297 1.19835 0.93163 1.13625 1.12924 1.18310 0.93249 0.93751 0.93571 1.21279 0.91561 0.99449 0.99783 1.20562 0.94976 1.00896 1.00251 1.85710 1.74432 1.22607 1.14839 0.84684 0.86805 0.86348 0.84000 0.95184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -18.03 18.54 19.00 0.35 -17.68 15 2 C 0.29 10.77 14.26 88.33 1.26 12.03 15 3 C -0.10 -3.80 5.76 -21.08 -0.12 -3.92 15 4 C 0.01 0.47 9.75 22.73 0.22 0.70 15 5 C -0.28 -11.77 6.45 23.06 0.15 -11.62 15 6 S 0.14 6.26 20.16 -56.49 -1.14 5.12 15 7 C 0.03 1.20 6.10 22.38 0.14 1.34 15 8 C -0.38 -16.29 9.26 23.15 0.21 -16.07 15 9 H 0.11 4.51 7.86 -2.91 -0.02 4.49 15 10 C 0.02 0.70 5.49 85.37 0.47 1.16 15 11 N -0.78 -31.54 10.62 21.89 0.23 -31.31 15 12 Si 1.01 28.76 29.57 68.60 2.03 30.79 15 13 H -0.26 -7.24 7.11 99.48 0.71 -6.53 15 14 H -0.26 -7.06 7.11 99.48 0.71 -6.36 15 15 H -0.25 -6.91 7.11 99.48 0.71 -6.20 15 16 C -0.37 -16.48 10.13 22.32 0.23 -16.26 15 17 C 0.02 0.93 5.85 -21.43 -0.13 0.80 15 18 C -0.10 -3.64 9.78 22.99 0.22 -3.42 15 19 C -0.05 -1.80 6.12 22.75 0.14 -1.67 15 20 S -0.13 -4.15 24.73 -56.49 -1.40 -5.54 15 21 H 0.14 4.47 8.06 -2.91 -0.02 4.45 15 22 H 0.32 11.22 8.29 -92.70 -0.77 10.45 15 23 H 0.12 4.95 8.06 -2.91 -0.02 4.93 15 24 H 0.14 4.65 8.06 -2.91 -0.02 4.63 15 25 H 0.08 2.39 9.07 73.35 0.67 3.05 15 Total: -1.00 -47.44 263.29 4.79 -42.64 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: 1.92 Total: 12.91 kcal Atomic # 6 Polarization: -39.72 SS G_CDS: 2.79 Total: -36.93 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: 0.58 Total: -48.99 kcal Atomic # 14 Polarization: 28.76 SS G_CDS: 2.03 Total: 30.79 kcal Atomic # 16 Polarization: 2.11 SS G_CDS: -2.54 Total: -0.42 kcal Total: -47.44 4.79 -42.64 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396213183.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.724 kcal (2) G-P(sol) polarization free energy of solvation -47.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds