Wall clock time and date at job start Mon Mar 30 2020 07:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.33605 * 124.37323 * 118.46417 * 3 2 1 5 5 C 1.45072 * 114.63111 * 180.02562 * 4 3 2 6 6 C 1.40942 * 128.90826 * 179.97438 * 5 4 3 7 7 C 1.39867 * 120.26142 * 179.97438 * 6 5 4 8 8 C 1.41261 * 120.00087 * 180.02562 * 7 6 5 9 9 H 1.08008 * 119.99933 * 24.74742 * 8 7 6 10 10 C 1.39799 * 120.00069 * 204.74786 * 8 7 6 11 11 N 1.30926 * 119.99944 * 18.02338 * 10 8 7 12 12 Si 1.86805 * 119.99867 * 198.02710 * 10 8 7 13 13 H 1.48501 * 109.47212 * 94.68786 * 12 10 8 14 14 H 1.48506 * 109.46831 * 214.68411 * 12 10 8 15 15 H 1.48498 * 109.47055 * 334.68477 * 12 10 8 16 16 C 1.41088 * 119.99636 * 359.97438 * 7 6 5 17 17 C 1.37261 * 119.95631 * 0.02562 * 16 7 6 18 18 S 1.76198 * 119.70417 * 180.02562 * 17 16 7 19 19 C 1.40158 * 111.97007 * 359.97438 * 5 4 3 20 20 S 1.75264 * 124.37434 * 298.50526 * 3 2 1 21 21 H 1.07997 * 122.68186 * 0.02562 * 4 3 2 22 22 H 1.07994 * 119.86782 * 359.97438 * 6 5 4 23 23 H 0.97004 * 119.99692 * 179.97438 * 11 10 8 24 24 H 1.08004 * 120.02650 * 180.02562 * 16 7 6 25 25 H 1.34505 * 102.99744 * 269.97694 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.3220 0.5266 -0.9694 5 6 4.7518 0.4097 -0.7539 6 6 5.8097 0.8534 -1.5728 7 6 7.1370 0.6437 -1.1849 8 6 8.1930 1.0912 -2.0096 9 1 8.0323 1.9089 -2.6967 10 6 9.4460 0.4756 -1.9365 11 7 9.5626 -0.7090 -1.3912 12 14 10.9540 1.3433 -2.6167 13 1 11.6379 2.0783 -1.5225 14 1 11.8834 0.3399 -3.1954 15 1 10.5395 2.3012 -3.6730 16 6 7.4212 -0.0138 0.0307 17 6 6.3944 -0.4477 0.8315 18 16 6.7569 -1.2675 2.3485 19 6 5.0490 -0.2429 0.4503 20 16 3.5578 -0.6893 1.2712 21 1 2.9008 1.0007 -1.8435 22 1 5.5945 1.3572 -2.5034 23 1 10.4320 -1.1362 -1.3408 24 1 8.4460 -0.1756 0.3309 25 1 6.8197 -2.5611 1.9858 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396213712.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:29:44 Heat of formation + Delta-G solvation = 59.245944 kcal Electronic energy + Delta-G solvation = -13768.143600 eV Core-core repulsion = 11349.783006 eV Total energy + Delta-G solvation = -2418.360594 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -38.42346 -36.68545 -35.04655 -33.18745 -30.34044 -29.01814 -25.86368 -23.73171 -21.99544 -20.62325 -18.49511 -17.62921 -16.76113 -16.07047 -15.30104 -14.79511 -14.44704 -13.92874 -13.77832 -13.28978 -13.01696 -12.77495 -12.45401 -12.36393 -11.77174 -11.39410 -11.32429 -11.07352 -11.00002 -10.43454 -10.28463 -10.13797 -9.69340 -9.41522 -8.65560 -7.74789 -7.63066 -7.26117 -7.04004 -4.70486 0.98184 1.72705 1.87332 2.37476 2.59881 2.74570 2.90773 2.94091 2.95480 3.15329 3.40968 3.59218 3.69280 4.13832 4.17380 5.14635 5.53748 5.80121 6.00368 6.22926 6.40944 6.54596 6.83209 6.89017 7.01529 7.18997 7.47017 7.58916 7.69246 8.09431 8.39291 8.47411 9.80973 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.027944 B = 0.006152 C = 0.005123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.773533 B = 4550.519861 C = 5463.813288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C 0.294 3.706 3 C -0.152 4.152 4 C -0.034 4.034 5 C -0.052 4.052 6 C -0.184 4.184 7 C 0.102 3.898 8 C -0.447 4.447 9 H 0.089 0.911 10 C 0.074 3.926 11 N -0.789 5.789 12 Si 0.916 3.084 13 H -0.264 1.264 14 H -0.276 1.276 15 H -0.259 1.259 16 C -0.044 4.044 17 C -0.068 4.068 18 S -0.157 6.157 19 C -0.183 4.183 20 S 0.114 5.886 21 H 0.142 0.858 22 H 0.109 0.891 23 H 0.288 0.712 24 H 0.144 0.856 25 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.828 0.642 1.410 1.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.109 5.109 2 C -0.021 4.021 3 C -0.271 4.271 4 C -0.072 4.072 5 C -0.060 4.060 6 C -0.208 4.208 7 C 0.096 3.904 8 C -0.476 4.476 9 H 0.107 0.893 10 C -0.146 4.146 11 N -0.413 5.413 12 Si 0.740 3.260 13 H -0.189 1.189 14 H -0.201 1.201 15 H -0.183 1.183 16 C -0.068 4.068 17 C -0.184 4.184 18 S 0.001 5.999 19 C -0.302 4.302 20 S 0.377 5.623 21 H 0.160 0.840 22 H 0.127 0.873 23 H 0.099 0.901 24 H 0.161 0.839 25 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -2.582 -0.556 3.766 4.599 hybrid contribution 1.327 0.376 -2.883 3.196 sum -1.255 -0.180 0.883 1.545 Atomic orbital electron populations 1.81211 1.11371 1.09935 1.08347 1.24594 0.91258 0.92953 0.93323 1.19295 0.88339 1.14914 1.04539 1.21291 0.92033 0.96538 0.97346 1.18714 0.91279 1.01245 0.94721 1.20932 0.90668 1.09546 0.99630 1.17434 0.91885 0.90061 0.91027 1.19615 0.93630 1.15306 1.19001 0.89307 1.26002 1.01088 0.93884 0.93614 1.69778 1.27168 1.11347 1.33047 0.86144 0.79819 0.80011 0.80044 1.18906 1.20062 1.18259 1.22031 0.98011 0.95019 0.91689 1.20062 0.92495 1.08143 0.97737 1.85491 1.94487 1.06375 1.13560 1.22291 0.95003 1.12538 1.00351 1.83766 0.94196 1.63077 1.21224 0.84033 0.87268 0.90067 0.83895 0.96732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -7.43 18.54 41.84 0.78 -6.65 15 2 C 0.29 4.79 15.73 -22.48 -0.35 4.44 15 3 C -0.15 -2.51 6.15 -39.28 -0.24 -2.75 15 4 C -0.03 -0.55 10.25 -38.50 -0.39 -0.95 15 5 C -0.05 -1.02 6.02 -105.45 -0.63 -1.66 15 6 C -0.18 -3.84 9.83 -37.95 -0.37 -4.21 15 7 C 0.10 2.31 5.55 -107.06 -0.59 1.72 15 8 C -0.45 -10.07 9.02 -37.85 -0.34 -10.41 15 9 H 0.09 1.90 7.91 -52.48 -0.41 1.49 15 10 C 0.07 1.59 5.12 -17.35 -0.09 1.50 15 11 N -0.79 -17.74 10.97 55.54 0.61 -17.13 15 12 Si 0.92 16.33 29.60 -169.99 -5.03 11.30 15 13 H -0.26 -4.69 7.11 56.52 0.40 -4.29 15 14 H -0.28 -4.89 7.11 56.52 0.40 -4.48 15 15 H -0.26 -4.57 7.11 56.52 0.40 -4.17 15 16 C -0.04 -0.99 8.35 -38.86 -0.32 -1.32 15 17 C -0.07 -1.42 6.13 -38.76 -0.24 -1.66 15 18 S -0.16 -2.90 25.42 -107.50 -2.73 -5.63 15 19 C -0.18 -3.67 6.38 -37.69 -0.24 -3.91 15 20 S 0.11 1.97 22.78 -107.50 -2.45 -0.48 15 21 H 0.14 1.94 8.06 -52.49 -0.42 1.52 15 22 H 0.11 2.07 8.06 -52.49 -0.42 1.65 15 23 H 0.29 5.90 8.30 -40.82 -0.34 5.56 15 24 H 0.14 3.30 6.16 -52.48 -0.32 2.98 15 25 H 0.07 1.22 9.07 97.61 0.89 2.10 15 LS Contribution 264.72 15.07 3.99 3.99 Total: -1.00 -22.97 264.72 -8.50 -31.47 By element: Atomic # 1 Polarization: 2.19 SS G_CDS: 0.17 Total: 2.36 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: -3.82 Total: -19.22 kcal Atomic # 7 Polarization: -25.17 SS G_CDS: 1.38 Total: -23.78 kcal Atomic # 14 Polarization: 16.33 SS G_CDS: -5.03 Total: 11.30 kcal Atomic # 16 Polarization: -0.93 SS G_CDS: -5.18 Total: -6.11 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -22.97 -8.50 -31.47 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396213712.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.714 kcal (2) G-P(sol) polarization free energy of solvation -22.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds