Wall clock time and date at job start Mon Mar 30 2020 07:30:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13598 * 1
3 3 C 1.43204 * 179.97438 * 2 1
4 4 C 1.38610 * 120.49676 * 231.39163 * 3 2 1
5 5 C 1.39871 * 120.73322 * 180.22060 * 4 3 2
6 6 S 1.76127 * 129.54078 * 179.76774 * 5 4 3
7 7 C 1.75194 * 92.36970 * 180.02562 * 6 5 4
8 8 C 1.32462 * 111.50366 * 0.02562 * 7 6 5
9 9 S 1.76199 * 122.62427 * 180.02562 * 8 7 6
10 10 C 1.40384 * 120.78243 * 359.79567 * 5 4 3
11 11 C 1.40386 * 119.93472 * 359.97438 * 10 5 4
12 12 C 1.39939 * 120.47008 * 359.97438 * 11 10 5
13 13 C 1.40674 * 120.46432 * 180.02562 * 12 11 10
14 14 H 1.07996 * 119.99676 * 154.26697 * 13 12 11
15 15 C 1.40048 * 119.99601 * 334.26432 * 13 12 11
16 16 N 1.30794 * 120.00388 * 334.49727 * 15 13 12
17 17 Si 1.86802 * 119.99900 * 154.50327 * 15 13 12
18 18 H 1.48502 * 109.47027 * 269.99931 * 17 15 13
19 19 H 1.48501 * 109.46766 * 29.99560 * 17 15 13
20 20 H 1.48497 * 109.47507 * 149.99644 * 17 15 13
21 21 H 1.08003 * 119.63015 * 0.02562 * 4 3 2
22 22 H 1.08002 * 124.24319 * 180.02562 * 7 6 5
23 23 H 1.34507 * 102.99944 * 269.97320 * 9 8 7
24 24 H 1.08000 * 119.75883 * 179.97438 * 11 10 5
25 25 H 0.96996 * 119.99801 * 354.24635 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.5680 0.0006 0.0000
4 6 3.2711 0.7462 0.9333
5 6 4.6698 0.7541 0.9349
6 16 5.7851 1.6101 1.9958
7 6 7.1857 0.9563 1.1712
8 6 6.8336 0.1570 0.1753
9 16 8.0117 -0.6591 -0.8497
10 6 5.3936 0.0040 -0.0055
11 6 4.7123 -0.7658 -0.9615
12 6 3.3134 -0.7927 -0.9851
13 6 2.6309 -1.5646 -1.9429
14 1 1.6340 -1.9244 -1.7355
15 6 3.2442 -1.8662 -3.1652
16 7 4.1747 -1.0802 -3.6417
17 14 2.7333 -3.3913 -4.1153
18 1 3.5727 -4.5414 -3.6938
19 1 1.3058 -3.6922 -3.8376
20 1 2.9150 -3.1525 -5.5697
21 1 2.7329 1.3300 1.6654
22 1 8.2079 1.1773 1.4410
23 1 8.2093 0.2233 -1.8454
24 1 5.2720 -1.3415 -1.6840
25 1 4.3818 -0.2459 -3.1923
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000396213887.mol2 25
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:30:04
Heat of formation + Delta-G solvation = 53.268079 kcal
Electronic energy + Delta-G solvation = -14083.427516 eV
Core-core repulsion = 11664.807702 eV
Total energy + Delta-G solvation = -2418.619814 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 260.998 amu
Computer time = 1.48 seconds
Orbital eigenvalues (eV)
-38.44914 -35.89867 -35.04424 -33.41325 -29.79749 -29.12020 -25.87421 -23.30148
-22.15273 -20.69652 -18.51111 -17.70674 -17.03914 -16.34626 -15.19591 -14.75600
-14.28996 -13.71668 -13.36926 -13.10589 -12.85975 -12.62029 -12.52153 -11.97656
-11.85512 -11.51778 -11.39124 -11.07497 -10.61279 -10.38079 -10.29136 -10.07210
-9.78946 -9.36904 -8.78207 -7.87915 -7.78745 -7.57550 -7.27790 -4.87599
1.05402 1.61771 2.19252 2.28095 2.43986 2.76670 3.01346 3.06134
3.20476 3.33549 3.62942 3.75536 3.90500 4.26565 4.98051 5.02797
5.15959 5.56967 5.92102 6.01740 6.35627 6.41702 6.79924 6.88348
7.07502 7.19156 7.33310 7.59640 7.66576 8.14470 8.30889 8.49986
9.58770
Molecular weight = 261.00amu
Principal moments of inertia in cm(-1)
A = 0.017290 B = 0.008926 C = 0.006032
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1619.059064 B = 3136.280679 C = 4640.703206
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.487 5.487
2 C 0.296 3.704
3 C -0.142 4.142
4 C 0.019 3.981
5 C -0.261 4.261
6 S 0.049 5.951
7 C -0.129 4.129
8 C -0.108 4.108
9 S -0.109 6.109
10 C 0.005 3.995
11 C -0.191 4.191
12 C 0.125 3.875
13 C -0.471 4.471
14 H 0.088 0.912
15 C 0.038 3.962
16 N -0.758 5.758
17 Si 1.069 2.931
18 H -0.266 1.266
19 H -0.272 1.272
20 H -0.272 1.272
21 H 0.108 0.892
22 H 0.165 0.835
23 H 0.070 0.930
24 H 0.129 0.871
25 H 0.305 0.695
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.949 1.355 3.640 7.961
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.165 5.165
2 C -0.015 4.015
3 C -0.149 4.149
4 C -0.006 4.006
5 C -0.376 4.376
6 S 0.309 5.691
7 C -0.266 4.266
8 C -0.235 4.235
9 S 0.045 5.955
10 C -0.003 4.003
11 C -0.213 4.213
12 C 0.119 3.881
13 C -0.497 4.497
14 H 0.106 0.894
15 C -0.189 4.189
16 N -0.379 5.379
17 Si 0.891 3.109
18 H -0.191 1.191
19 H -0.197 1.197
20 H -0.196 1.196
21 H 0.126 0.874
22 H 0.183 0.817
23 H 0.034 0.966
24 H 0.147 0.853
25 H 0.119 0.881
Dipole moment (debyes) X Y Z Total
from point charges 6.035 0.913 3.101 6.846
hybrid contribution -0.177 1.310 0.147 1.330
sum 5.858 2.223 3.248 7.057
Atomic orbital electron populations
1.81056 1.12425 1.11786 1.11222 1.25558 0.92476 0.91836 0.91646
1.16728 0.83486 1.08584 1.06097 1.19863 0.90512 0.95003 0.95209
1.21393 0.95939 1.13817 1.06497 1.83551 0.95455 1.52436 1.37647
1.25486 1.02675 0.99752 0.98735 1.21063 0.95212 1.05567 1.01686
1.85630 1.52049 1.29630 1.28174 1.18887 0.89272 0.96634 0.95494
1.20975 0.92886 1.05074 1.02363 1.18176 0.90892 0.88630 0.90435
1.20782 1.03683 1.25122 1.00141 0.89397 1.27324 0.92239 1.02957
0.96337 1.70436 1.20668 1.09050 1.37728 0.83553 0.77425 0.73653
0.76298 1.19128 1.19695 1.19631 0.87350 0.81728 0.96619 0.85330
0.88121
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.49 -11.18 18.54 41.84 0.78 -10.41 15
2 C 0.30 6.62 14.30 -22.47 -0.32 6.29 15
3 C -0.14 -3.12 5.92 -104.37 -0.62 -3.74 15
4 C 0.02 0.38 9.75 -38.83 -0.38 0.00 15
5 C -0.26 -5.14 6.45 -38.16 -0.25 -5.39 15
6 S 0.05 0.79 23.23 -107.50 -2.50 -1.71 15
7 C -0.13 -2.00 10.82 28.81 0.31 -1.69 15
8 C -0.11 -1.95 6.21 -38.42 -0.24 -2.19 15
9 S -0.11 -1.81 25.60 -107.50 -2.75 -4.56 15
10 C 0.01 0.10 6.01 -105.20 -0.63 -0.53 15
11 C -0.19 -4.29 7.74 -38.14 -0.30 -4.59 15
12 C 0.12 2.92 5.44 -104.87 -0.57 2.35 15
13 C -0.47 -11.13 8.47 -37.98 -0.32 -11.46 15
14 H 0.09 2.11 7.46 -52.49 -0.39 1.72 15
15 C 0.04 0.85 4.93 -17.31 -0.09 0.76 15
16 N -0.76 -17.77 12.32 55.55 0.68 -17.08 15
17 Si 1.07 19.49 30.00 -169.99 -5.10 14.39 15
18 H -0.27 -4.68 7.11 56.52 0.40 -4.28 15
19 H -0.27 -4.84 7.11 56.52 0.40 -4.44 15
20 H -0.27 -4.89 7.11 56.52 0.40 -4.49 15
21 H 0.11 1.89 8.06 -52.48 -0.42 1.46 15
22 H 0.17 2.00 8.06 -52.49 -0.42 1.58 15
23 H 0.07 1.10 9.07 97.61 0.89 1.99 15
24 H 0.13 2.99 6.31 -52.49 -0.33 2.66 15
25 H 0.30 7.30 6.71 -40.82 -0.27 7.03 15
LS Contribution 262.72 15.07 3.96 3.96
Total: -1.00 -24.27 262.72 -8.08 -32.35
By element:
Atomic # 1 Polarization: 2.98 SS G_CDS: 0.25 Total: 3.23 kcal
Atomic # 6 Polarization: -16.77 SS G_CDS: -3.40 Total: -20.17 kcal
Atomic # 7 Polarization: -28.95 SS G_CDS: 1.46 Total: -27.49 kcal
Atomic # 14 Polarization: 19.49 SS G_CDS: -5.10 Total: 14.39 kcal
Atomic # 16 Polarization: -1.02 SS G_CDS: -5.25 Total: -6.27 kcal
Total LS contribution 3.96 Total: 3.96 kcal
Total: -24.27 -8.08 -32.35 kcal
The number of atoms in the molecule is 25
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000396213887.mol2 25
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 85.614 kcal
(2) G-P(sol) polarization free energy of solvation -24.268 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.346 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.078 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.346 kcal
(6) G-S(sol) free energy of system = (1) + (5) 53.268 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.48 seconds