Wall clock time and date at job start Mon Mar 30 2020 07:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.38610 * 120.49676 * 231.39163 * 3 2 1 5 5 C 1.39871 * 120.73322 * 180.22060 * 4 3 2 6 6 S 1.76127 * 129.54078 * 179.76774 * 5 4 3 7 7 C 1.75194 * 92.36970 * 180.02562 * 6 5 4 8 8 C 1.32462 * 111.50366 * 0.02562 * 7 6 5 9 9 S 1.76199 * 122.62427 * 180.02562 * 8 7 6 10 10 C 1.40384 * 120.78243 * 359.79567 * 5 4 3 11 11 C 1.40386 * 119.93472 * 359.97438 * 10 5 4 12 12 C 1.39939 * 120.47008 * 359.97438 * 11 10 5 13 13 C 1.40674 * 120.46432 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99676 * 154.26697 * 13 12 11 15 15 C 1.40048 * 119.99601 * 334.26432 * 13 12 11 16 16 N 1.30794 * 120.00388 * 334.49727 * 15 13 12 17 17 Si 1.86802 * 119.99900 * 154.50327 * 15 13 12 18 18 H 1.48502 * 109.47027 * 269.99931 * 17 15 13 19 19 H 1.48501 * 109.46766 * 29.99560 * 17 15 13 20 20 H 1.48497 * 109.47507 * 149.99644 * 17 15 13 21 21 H 1.08003 * 119.63015 * 0.02562 * 4 3 2 22 22 H 1.08002 * 124.24319 * 180.02562 * 7 6 5 23 23 H 1.34507 * 102.99944 * 269.97320 * 9 8 7 24 24 H 1.08000 * 119.75883 * 179.97438 * 11 10 5 25 25 H 0.96996 * 119.99801 * 354.24635 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2711 0.7462 0.9333 5 6 4.6698 0.7541 0.9349 6 16 5.7851 1.6101 1.9958 7 6 7.1857 0.9563 1.1712 8 6 6.8336 0.1570 0.1753 9 16 8.0117 -0.6591 -0.8497 10 6 5.3936 0.0040 -0.0055 11 6 4.7123 -0.7658 -0.9615 12 6 3.3134 -0.7927 -0.9851 13 6 2.6309 -1.5646 -1.9429 14 1 1.6340 -1.9244 -1.7355 15 6 3.2442 -1.8662 -3.1652 16 7 4.1747 -1.0802 -3.6417 17 14 2.7333 -3.3913 -4.1153 18 1 3.5727 -4.5414 -3.6938 19 1 1.3058 -3.6922 -3.8376 20 1 2.9150 -3.1525 -5.5697 21 1 2.7329 1.3300 1.6654 22 1 8.2079 1.1773 1.4410 23 1 8.2093 0.2233 -1.8454 24 1 5.2720 -1.3415 -1.6840 25 1 4.3818 -0.2459 -3.1923 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396213887.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:30:04 Heat of formation + Delta-G solvation = 53.268079 kcal Electronic energy + Delta-G solvation = -14083.427516 eV Core-core repulsion = 11664.807702 eV Total energy + Delta-G solvation = -2418.619814 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -38.44914 -35.89867 -35.04424 -33.41325 -29.79749 -29.12020 -25.87421 -23.30148 -22.15273 -20.69652 -18.51111 -17.70674 -17.03914 -16.34626 -15.19591 -14.75600 -14.28996 -13.71668 -13.36926 -13.10589 -12.85975 -12.62029 -12.52153 -11.97656 -11.85512 -11.51778 -11.39124 -11.07497 -10.61279 -10.38079 -10.29136 -10.07210 -9.78946 -9.36904 -8.78207 -7.87915 -7.78745 -7.57550 -7.27790 -4.87599 1.05402 1.61771 2.19252 2.28095 2.43986 2.76670 3.01346 3.06134 3.20476 3.33549 3.62942 3.75536 3.90500 4.26565 4.98051 5.02797 5.15959 5.56967 5.92102 6.01740 6.35627 6.41702 6.79924 6.88348 7.07502 7.19156 7.33310 7.59640 7.66576 8.14470 8.30889 8.49986 9.58770 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.017290 B = 0.008926 C = 0.006032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.059064 B = 3136.280679 C = 4640.703206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C 0.296 3.704 3 C -0.142 4.142 4 C 0.019 3.981 5 C -0.261 4.261 6 S 0.049 5.951 7 C -0.129 4.129 8 C -0.108 4.108 9 S -0.109 6.109 10 C 0.005 3.995 11 C -0.191 4.191 12 C 0.125 3.875 13 C -0.471 4.471 14 H 0.088 0.912 15 C 0.038 3.962 16 N -0.758 5.758 17 Si 1.069 2.931 18 H -0.266 1.266 19 H -0.272 1.272 20 H -0.272 1.272 21 H 0.108 0.892 22 H 0.165 0.835 23 H 0.070 0.930 24 H 0.129 0.871 25 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.949 1.355 3.640 7.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.165 5.165 2 C -0.015 4.015 3 C -0.149 4.149 4 C -0.006 4.006 5 C -0.376 4.376 6 S 0.309 5.691 7 C -0.266 4.266 8 C -0.235 4.235 9 S 0.045 5.955 10 C -0.003 4.003 11 C -0.213 4.213 12 C 0.119 3.881 13 C -0.497 4.497 14 H 0.106 0.894 15 C -0.189 4.189 16 N -0.379 5.379 17 Si 0.891 3.109 18 H -0.191 1.191 19 H -0.197 1.197 20 H -0.196 1.196 21 H 0.126 0.874 22 H 0.183 0.817 23 H 0.034 0.966 24 H 0.147 0.853 25 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.035 0.913 3.101 6.846 hybrid contribution -0.177 1.310 0.147 1.330 sum 5.858 2.223 3.248 7.057 Atomic orbital electron populations 1.81056 1.12425 1.11786 1.11222 1.25558 0.92476 0.91836 0.91646 1.16728 0.83486 1.08584 1.06097 1.19863 0.90512 0.95003 0.95209 1.21393 0.95939 1.13817 1.06497 1.83551 0.95455 1.52436 1.37647 1.25486 1.02675 0.99752 0.98735 1.21063 0.95212 1.05567 1.01686 1.85630 1.52049 1.29630 1.28174 1.18887 0.89272 0.96634 0.95494 1.20975 0.92886 1.05074 1.02363 1.18176 0.90892 0.88630 0.90435 1.20782 1.03683 1.25122 1.00141 0.89397 1.27324 0.92239 1.02957 0.96337 1.70436 1.20668 1.09050 1.37728 0.83553 0.77425 0.73653 0.76298 1.19128 1.19695 1.19631 0.87350 0.81728 0.96619 0.85330 0.88121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -11.18 18.54 41.84 0.78 -10.41 15 2 C 0.30 6.62 14.30 -22.47 -0.32 6.29 15 3 C -0.14 -3.12 5.92 -104.37 -0.62 -3.74 15 4 C 0.02 0.38 9.75 -38.83 -0.38 0.00 15 5 C -0.26 -5.14 6.45 -38.16 -0.25 -5.39 15 6 S 0.05 0.79 23.23 -107.50 -2.50 -1.71 15 7 C -0.13 -2.00 10.82 28.81 0.31 -1.69 15 8 C -0.11 -1.95 6.21 -38.42 -0.24 -2.19 15 9 S -0.11 -1.81 25.60 -107.50 -2.75 -4.56 15 10 C 0.01 0.10 6.01 -105.20 -0.63 -0.53 15 11 C -0.19 -4.29 7.74 -38.14 -0.30 -4.59 15 12 C 0.12 2.92 5.44 -104.87 -0.57 2.35 15 13 C -0.47 -11.13 8.47 -37.98 -0.32 -11.46 15 14 H 0.09 2.11 7.46 -52.49 -0.39 1.72 15 15 C 0.04 0.85 4.93 -17.31 -0.09 0.76 15 16 N -0.76 -17.77 12.32 55.55 0.68 -17.08 15 17 Si 1.07 19.49 30.00 -169.99 -5.10 14.39 15 18 H -0.27 -4.68 7.11 56.52 0.40 -4.28 15 19 H -0.27 -4.84 7.11 56.52 0.40 -4.44 15 20 H -0.27 -4.89 7.11 56.52 0.40 -4.49 15 21 H 0.11 1.89 8.06 -52.48 -0.42 1.46 15 22 H 0.17 2.00 8.06 -52.49 -0.42 1.58 15 23 H 0.07 1.10 9.07 97.61 0.89 1.99 15 24 H 0.13 2.99 6.31 -52.49 -0.33 2.66 15 25 H 0.30 7.30 6.71 -40.82 -0.27 7.03 15 LS Contribution 262.72 15.07 3.96 3.96 Total: -1.00 -24.27 262.72 -8.08 -32.35 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: 0.25 Total: 3.23 kcal Atomic # 6 Polarization: -16.77 SS G_CDS: -3.40 Total: -20.17 kcal Atomic # 7 Polarization: -28.95 SS G_CDS: 1.46 Total: -27.49 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.10 Total: 14.39 kcal Atomic # 16 Polarization: -1.02 SS G_CDS: -5.25 Total: -6.27 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -24.27 -8.08 -32.35 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396213887.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.614 kcal (2) G-P(sol) polarization free energy of solvation -24.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds