Wall clock time and date at job start Mon Mar 30 2020 07:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.38610 * 120.49676 * 231.39163 * 3 2 1 5 5 C 1.39871 * 120.73322 * 180.22060 * 4 3 2 6 6 S 1.76127 * 129.54078 * 179.76774 * 5 4 3 7 7 C 1.75194 * 92.36970 * 180.02562 * 6 5 4 8 8 C 1.32462 * 111.50366 * 0.02562 * 7 6 5 9 9 S 1.76199 * 122.62427 * 180.02562 * 8 7 6 10 10 C 1.40384 * 120.78243 * 359.79567 * 5 4 3 11 11 C 1.40386 * 119.93472 * 359.97438 * 10 5 4 12 12 C 1.39939 * 120.47008 * 359.97438 * 11 10 5 13 13 C 1.40674 * 120.46432 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99676 * 154.26697 * 13 12 11 15 15 C 1.40048 * 119.99601 * 334.26432 * 13 12 11 16 16 N 1.30794 * 120.00388 * 334.49727 * 15 13 12 17 17 Si 1.86802 * 119.99900 * 154.50327 * 15 13 12 18 18 H 1.48502 * 109.47027 * 269.99931 * 17 15 13 19 19 H 1.48501 * 109.46766 * 29.99560 * 17 15 13 20 20 H 1.48497 * 109.47507 * 149.99644 * 17 15 13 21 21 H 1.08003 * 119.63015 * 0.02562 * 4 3 2 22 22 H 1.08002 * 124.24319 * 180.02562 * 7 6 5 23 23 H 1.34507 * 102.99944 * 269.97320 * 9 8 7 24 24 H 1.08000 * 119.75883 * 179.97438 * 11 10 5 25 25 H 0.96996 * 119.99801 * 354.24635 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2711 0.7462 0.9333 5 6 4.6698 0.7541 0.9349 6 16 5.7851 1.6101 1.9958 7 6 7.1857 0.9563 1.1712 8 6 6.8336 0.1570 0.1753 9 16 8.0117 -0.6591 -0.8497 10 6 5.3936 0.0040 -0.0055 11 6 4.7123 -0.7658 -0.9615 12 6 3.3134 -0.7927 -0.9851 13 6 2.6309 -1.5646 -1.9429 14 1 1.6340 -1.9244 -1.7355 15 6 3.2442 -1.8662 -3.1652 16 7 4.1747 -1.0802 -3.6417 17 14 2.7333 -3.3913 -4.1153 18 1 3.5727 -4.5414 -3.6938 19 1 1.3058 -3.6922 -3.8376 20 1 2.9150 -3.1525 -5.5697 21 1 2.7329 1.3300 1.6654 22 1 8.2079 1.1773 1.4410 23 1 8.2093 0.2233 -1.8454 24 1 5.2720 -1.3415 -1.6840 25 1 4.3818 -0.2459 -3.1923 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396213887.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:30:02 Heat of formation + Delta-G solvation = 42.644891 kcal Electronic energy + Delta-G solvation = -14083.888172 eV Core-core repulsion = 11664.807702 eV Total energy + Delta-G solvation = -2419.080470 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.06491 -37.58063 -36.71819 -35.00110 -31.46306 -30.69246 -27.56596 -24.83287 -23.73008 -22.23271 -20.19144 -19.29304 -18.45014 -17.74482 -16.75705 -16.34522 -15.74198 -15.21090 -15.02547 -14.74530 -14.46140 -14.28250 -14.10956 -13.55006 -13.49431 -13.13512 -12.90650 -12.58639 -12.06254 -11.88463 -11.80588 -11.55516 -11.33483 -10.98298 -10.34484 -9.56082 -9.25056 -9.07051 -8.72874 -6.61728 -0.42288 0.28758 0.62022 0.74485 0.94662 1.37920 1.51035 1.59942 1.78480 1.84150 1.96939 2.24463 2.27024 2.55975 3.30079 3.32803 3.77620 4.00132 4.55050 4.58897 4.72041 4.85822 5.14139 5.20457 5.41319 5.47766 5.59357 5.89297 5.96937 6.41461 6.59629 6.72480 7.82958 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.017290 B = 0.008926 C = 0.006032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.059064 B = 3136.280679 C = 4640.703206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C 0.303 3.697 3 C -0.159 4.159 4 C 0.025 3.975 5 C -0.278 4.278 6 S 0.119 5.881 7 C -0.103 4.103 8 C -0.147 4.147 9 S -0.101 6.101 10 C 0.000 4.000 11 C -0.212 4.212 12 C 0.111 3.889 13 C -0.506 4.506 14 H 0.073 0.927 15 C 0.012 3.988 16 N -0.778 5.778 17 Si 1.112 2.888 18 H -0.254 1.254 19 H -0.268 1.268 20 H -0.266 1.266 21 H 0.136 0.864 22 H 0.207 0.793 23 H 0.071 0.929 24 H 0.114 0.886 25 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.473 2.206 5.244 10.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.182 5.182 2 C -0.008 4.008 3 C -0.166 4.166 4 C 0.001 3.999 5 C -0.393 4.393 6 S 0.380 5.620 7 C -0.240 4.240 8 C -0.274 4.274 9 S 0.053 5.947 10 C -0.008 4.008 11 C -0.234 4.234 12 C 0.105 3.895 13 C -0.533 4.533 14 H 0.092 0.908 15 C -0.209 4.209 16 N -0.399 5.399 17 Si 0.928 3.072 18 H -0.179 1.179 19 H -0.192 1.192 20 H -0.191 1.191 21 H 0.154 0.846 22 H 0.224 0.776 23 H 0.035 0.965 24 H 0.132 0.868 25 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.558 1.780 4.727 9.091 hybrid contribution -0.523 1.228 -0.109 1.340 sum 7.035 3.009 4.618 8.937 Atomic orbital electron populations 1.81039 1.12775 1.12477 1.11878 1.25672 0.92580 0.91355 0.91161 1.16890 0.83334 1.09522 1.06877 1.20153 0.90975 0.94057 0.94753 1.21916 0.96670 1.13576 1.07123 1.83388 0.93319 1.50231 1.35094 1.26056 1.04726 0.96775 0.96455 1.21079 0.94138 1.08285 1.03917 1.85561 1.50813 1.30043 1.28250 1.19248 0.91194 0.95626 0.94730 1.20839 0.92585 1.06581 1.03421 1.18418 0.91618 0.88698 0.90741 1.20798 1.03595 1.27550 1.01403 0.90847 1.28418 0.91519 1.04392 0.96581 1.70524 1.22278 1.09084 1.37980 0.83044 0.77459 0.71248 0.75422 1.17869 1.19241 1.19074 0.84575 0.77649 0.96476 0.86808 0.89556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -23.31 18.54 19.00 0.35 -22.95 15 2 C 0.30 13.70 14.30 88.33 1.26 14.96 15 3 C -0.16 -7.06 5.92 -19.70 -0.12 -7.18 15 4 C 0.03 0.97 9.75 22.75 0.22 1.19 15 5 C -0.28 -10.33 6.45 23.19 0.15 -10.18 15 6 S 0.12 3.27 23.23 -56.49 -1.31 1.96 15 7 C -0.10 -2.74 10.82 66.69 0.72 -2.02 15 8 C -0.15 -5.00 6.21 23.14 0.14 -4.85 15 9 S -0.10 -3.20 25.60 -56.49 -1.45 -4.65 15 10 C 0.00 0.02 6.01 -20.24 -0.12 -0.10 15 11 C -0.21 -9.77 7.74 23.21 0.18 -9.59 15 12 C 0.11 5.37 5.44 -20.03 -0.11 5.26 15 13 C -0.51 -25.05 8.47 23.30 0.20 -24.85 15 14 H 0.07 3.72 7.46 -2.91 -0.02 3.69 15 15 C 0.01 0.57 4.93 85.29 0.42 0.99 15 16 N -0.78 -37.86 12.32 21.85 0.27 -37.59 15 17 Si 1.11 40.12 30.00 68.60 2.06 42.17 15 18 H -0.25 -8.62 7.11 99.48 0.71 -7.91 15 19 H -0.27 -9.35 7.11 99.48 0.71 -8.65 15 20 H -0.27 -9.29 7.11 99.48 0.71 -8.59 15 21 H 0.14 4.37 8.06 -2.91 -0.02 4.35 15 22 H 0.21 3.79 8.06 -2.91 -0.02 3.77 15 23 H 0.07 2.17 9.07 73.35 0.67 2.84 15 24 H 0.11 5.51 6.31 -2.91 -0.02 5.50 15 25 H 0.29 14.69 6.71 -92.71 -0.62 14.06 15 Total: -1.00 -53.31 262.72 4.95 -48.36 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: 2.08 Total: 9.06 kcal Atomic # 6 Polarization: -39.32 SS G_CDS: 2.95 Total: -36.37 kcal Atomic # 7 Polarization: -61.16 SS G_CDS: 0.62 Total: -60.54 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 2.06 Total: 42.17 kcal Atomic # 16 Polarization: 0.07 SS G_CDS: -2.76 Total: -2.69 kcal Total: -53.31 4.95 -48.36 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396213887.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.007 kcal (2) G-P(sol) polarization free energy of solvation -53.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds