Wall clock time and date at job start Mon Mar 30 2020 07:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39501 * 120.46457 * 295.09041 * 3 2 1 5 5 C 1.37368 * 120.91073 * 180.02562 * 4 3 2 6 6 C 1.39856 * 122.48933 * 0.02562 * 5 4 3 7 7 S 1.76213 * 130.01321 * 180.02562 * 6 5 4 8 8 C 1.75457 * 91.65317 * 179.97438 * 7 6 5 9 9 C 1.33590 * 110.63614 * 359.97438 * 8 7 6 10 10 S 1.76206 * 122.22744 * 179.97438 * 9 8 7 11 11 C 1.39794 * 120.63883 * 0.02562 * 6 5 4 12 12 C 1.46290 * 120.45791 * 115.12197 * 3 2 1 13 13 C 1.39891 * 120.71242 * 359.97438 * 12 3 2 14 14 H 1.08001 * 120.00424 * 223.82301 * 13 12 3 15 15 C 1.40184 * 119.99477 * 43.82645 * 13 12 3 16 16 N 1.30721 * 120.00417 * 19.42519 * 15 13 12 17 17 Si 1.86800 * 119.99715 * 199.42624 * 15 13 12 18 18 H 1.48506 * 109.47294 * 60.00192 * 17 15 13 19 19 H 1.48501 * 109.47152 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47307 * 299.99704 * 17 15 13 21 21 H 1.08002 * 119.53813 * 0.02562 * 4 3 2 22 22 H 1.08008 * 118.75381 * 179.72390 * 5 4 3 23 23 H 1.08003 * 124.68081 * 179.97438 * 8 7 6 24 24 H 1.34504 * 102.99873 * 270.02451 * 10 9 8 25 25 H 0.96999 * 120.00277 * 182.81345 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2755 -0.5089 1.0890 5 6 4.6491 -0.5124 1.0989 6 6 5.4093 -0.0133 0.0363 7 16 7.1579 0.0798 -0.1602 8 6 6.9917 0.8211 -1.7418 9 6 5.7026 0.9687 -2.0594 10 16 5.1866 1.6841 -3.5848 11 6 4.7869 0.5183 -1.0970 12 6 3.3093 0.5363 -1.1417 13 6 2.6345 1.0558 -2.2516 14 1 2.9656 0.8085 -3.2494 15 6 1.5285 1.8975 -2.0685 16 7 1.3494 2.5017 -0.9232 17 14 0.3107 2.1557 -3.4612 18 1 -0.2899 0.8519 -3.8417 19 1 -0.7602 3.0836 -3.0167 20 1 1.0142 2.7375 -4.6325 21 1 2.7357 -0.9062 1.9359 22 1 5.1615 -0.9113 1.9620 23 1 7.8177 1.1172 -2.3715 24 1 5.0972 2.9934 -3.2900 25 1 0.5628 3.0516 -0.7827 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396213999.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:15 Heat of formation + Delta-G solvation = 54.867564 kcal Electronic energy + Delta-G solvation = -14434.644865 eV Core-core repulsion = 12016.094410 eV Total energy + Delta-G solvation = -2418.550455 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.80278 -37.36669 -35.68010 -35.40828 -31.85488 -30.26991 -27.32156 -25.07213 -23.34725 -22.10434 -19.92554 -18.78055 -17.92248 -17.72769 -16.95467 -16.43701 -15.86291 -15.12381 -14.67431 -14.62411 -14.44005 -13.92779 -13.61503 -13.37028 -13.25797 -13.10877 -12.82283 -12.73789 -12.33414 -12.07151 -11.64796 -11.58889 -11.30109 -11.03163 -9.93649 -9.22854 -8.98061 -8.76777 -8.25852 -6.46371 -0.12404 0.35084 0.53830 0.88480 1.15662 1.28729 1.38172 1.42406 1.62963 2.05417 2.15333 2.23768 2.39150 2.75257 3.47136 3.75599 4.13723 4.41092 4.56806 4.72550 4.99709 5.04450 5.07975 5.24689 5.54911 5.71753 5.88402 6.00663 6.41295 6.55564 6.67435 7.15995 7.99885 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.020773 B = 0.010184 C = 0.007120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.575024 B = 2748.725246 C = 3931.775565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C 0.327 3.673 3 C -0.185 4.185 4 C -0.003 4.003 5 C -0.219 4.219 6 C -0.089 4.089 7 S 0.128 5.872 8 C -0.190 4.190 9 C -0.079 4.079 10 S -0.101 6.101 11 C -0.169 4.169 12 C 0.181 3.819 13 C -0.436 4.436 14 H 0.124 0.876 15 C 0.051 3.949 16 N -0.787 5.787 17 Si 0.945 3.055 18 H -0.264 1.264 19 H -0.277 1.277 20 H -0.237 1.237 21 H 0.130 0.870 22 H 0.134 0.866 23 H 0.196 0.804 24 H 0.066 0.934 25 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.996 -1.330 -1.307 10.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.216 5.216 2 C 0.017 3.983 3 C -0.194 4.194 4 C -0.027 4.027 5 C -0.243 4.243 6 C -0.207 4.207 7 S 0.391 5.609 8 C -0.327 4.327 9 C -0.203 4.203 10 S 0.054 5.946 11 C -0.178 4.178 12 C 0.172 3.828 13 C -0.463 4.463 14 H 0.142 0.858 15 C -0.170 4.170 16 N -0.409 5.409 17 Si 0.766 3.234 18 H -0.188 1.188 19 H -0.202 1.202 20 H -0.160 1.160 21 H 0.148 0.852 22 H 0.152 0.848 23 H 0.213 0.787 24 H 0.030 0.970 25 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 9.196 -1.331 -1.250 9.376 hybrid contribution -1.474 1.420 0.030 2.047 sum 7.722 0.090 -1.219 7.818 Atomic orbital electron populations 1.80899 1.13421 1.15440 1.11798 1.25576 0.92719 0.89470 0.90495 1.16926 0.83443 1.17228 1.01759 1.20610 0.93653 0.93542 0.94874 1.19619 0.92356 1.13122 0.99234 1.22849 0.97239 1.02395 0.98223 1.83443 1.00609 1.63268 1.13555 1.25923 0.98942 1.07151 1.00718 1.19879 0.94399 1.07586 0.98450 1.85153 1.91599 1.07067 1.10748 1.19342 0.93540 1.09569 0.95312 1.19430 0.88083 0.85204 0.90039 1.20164 1.08233 1.21382 0.96561 0.85823 1.26600 0.98101 0.93691 0.98586 1.69720 1.25670 1.19631 1.25901 0.85738 0.78185 0.79478 0.80025 1.18810 1.20237 1.15972 0.85200 0.84846 0.78727 0.96988 0.89833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.54 -27.22 18.52 19.00 0.35 -26.87 15 2 C 0.33 16.12 11.78 88.33 1.04 17.16 15 3 C -0.19 -8.65 5.59 -19.63 -0.11 -8.76 15 4 C 0.00 -0.13 9.68 22.37 0.22 0.09 15 5 C -0.22 -7.95 9.94 22.46 0.22 -7.73 15 6 C -0.09 -3.39 6.47 23.04 0.15 -3.24 15 7 S 0.13 3.72 23.29 -56.49 -1.32 2.41 15 8 C -0.19 -5.77 10.92 66.77 0.73 -5.04 15 9 C -0.08 -2.96 6.05 21.71 0.13 -2.83 15 10 S -0.10 -3.60 22.51 -56.49 -1.27 -4.87 15 11 C -0.17 -7.24 6.03 -19.86 -0.12 -7.36 15 12 C 0.18 8.59 5.59 -18.24 -0.10 8.49 15 13 C -0.44 -20.76 7.14 23.14 0.17 -20.59 15 14 H 0.12 5.65 6.10 -2.91 -0.02 5.63 15 15 C 0.05 2.45 4.15 85.33 0.35 2.80 15 16 N -0.79 -39.52 11.25 21.87 0.25 -39.27 15 17 Si 0.94 38.17 29.60 68.60 2.03 40.20 15 18 H -0.26 -10.92 7.11 99.48 0.71 -10.21 15 19 H -0.28 -11.18 7.11 99.48 0.71 -10.47 15 20 H -0.24 -8.71 7.11 99.48 0.71 -8.01 15 21 H 0.13 4.38 8.06 -2.91 -0.02 4.36 15 22 H 0.13 3.96 8.06 -2.91 -0.02 3.93 15 23 H 0.20 4.52 8.06 -2.91 -0.02 4.50 15 24 H 0.07 2.37 9.07 73.35 0.67 3.03 15 25 H 0.29 14.04 8.30 -92.71 -0.77 13.27 15 Total: -1.00 -54.02 257.47 4.65 -49.38 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: 1.93 Total: 6.04 kcal Atomic # 6 Polarization: -29.68 SS G_CDS: 2.68 Total: -27.01 kcal Atomic # 7 Polarization: -66.74 SS G_CDS: 0.60 Total: -66.14 kcal Atomic # 14 Polarization: 38.17 SS G_CDS: 2.03 Total: 40.20 kcal Atomic # 16 Polarization: 0.12 SS G_CDS: -2.59 Total: -2.46 kcal Total: -54.02 4.65 -49.38 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396213999.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.243 kcal (2) G-P(sol) polarization free energy of solvation -54.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds