Wall clock time and date at job start Mon Mar 30 2020 07:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.38290 * 119.82252 * 171.25383 * 3 2 1 5 5 C 1.40748 * 119.78107 * 179.97438 * 4 3 2 6 6 C 1.41305 * 119.96779 * 179.97438 * 5 4 3 7 7 H 1.08001 * 119.99877 * 204.83680 * 6 5 4 8 8 C 1.39775 * 120.00316 * 24.82511 * 6 5 4 9 9 N 1.30941 * 119.99978 * 18.05301 * 8 6 5 10 10 Si 1.86799 * 120.00365 * 198.04878 * 8 6 5 11 11 H 1.48505 * 109.46732 * 90.00585 * 10 8 6 12 12 H 1.48499 * 109.47165 * 210.00331 * 10 8 6 13 13 H 1.48497 * 109.47473 * 330.00645 * 10 8 6 14 14 C 1.40113 * 120.06571 * 0.02562 * 5 4 3 15 15 C 1.40295 * 120.49563 * 359.97438 * 14 5 4 16 16 C 1.46032 * 129.02452 * 179.97438 * 15 14 5 17 17 S 1.76199 * 122.63959 * 359.97438 * 16 15 14 18 18 C 1.32199 * 114.71748 * 180.02562 * 16 15 14 19 19 S 1.75236 * 111.49654 * 359.97438 * 18 16 15 20 20 C 1.40055 * 119.24733 * 359.97438 * 15 14 5 21 21 H 1.08001 * 120.11726 * 0.02562 * 4 3 2 22 22 H 0.96994 * 120.00487 * 179.97438 * 9 8 6 23 23 H 1.08004 * 119.75405 * 179.97438 * 14 5 4 24 24 H 1.34504 * 102.99943 * 89.99918 * 17 16 15 25 25 H 1.08003 * 124.25250 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2553 1.1868 -0.1824 5 6 4.6627 1.1865 -0.1817 6 6 5.3689 2.3961 -0.3683 7 1 6.3742 2.3792 -0.7628 8 6 4.7664 3.6146 -0.0427 9 7 3.7213 3.6381 0.7459 10 14 5.4521 5.2095 -0.7322 11 1 4.7918 5.5131 -2.0272 12 1 5.1943 6.3143 0.2260 13 1 6.9153 5.0689 -0.9435 14 6 5.3644 -0.0122 0.0027 15 6 4.6745 -1.2196 0.1884 16 6 5.2102 -2.5624 0.3945 17 16 6.9391 -2.8985 0.4449 18 6 4.2958 -3.5062 0.5393 19 16 2.6741 -2.8498 0.4391 20 6 3.2739 -1.2146 0.1881 21 1 2.7139 2.1105 -0.3242 22 1 3.3034 4.4836 0.9722 23 1 6.4444 -0.0067 0.0020 24 1 7.2369 -2.7569 1.7489 25 1 4.5201 -4.5505 0.6991 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396214005.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:29:06 Heat of formation + Delta-G solvation = 60.648057 kcal Electronic energy + Delta-G solvation = -13954.072555 eV Core-core repulsion = 11535.772761 eV Total energy + Delta-G solvation = -2418.299794 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.51084 -35.98731 -35.16806 -33.15139 -30.52703 -28.72598 -25.81046 -23.13973 -22.62784 -20.37646 -18.82090 -17.01471 -16.77191 -16.12770 -15.45436 -14.81300 -14.48222 -13.81790 -13.55416 -13.42522 -12.58762 -12.51110 -12.43599 -12.01588 -11.76278 -11.64057 -11.33304 -10.99987 -10.74316 -10.45701 -10.42283 -10.02352 -9.90629 -9.41810 -8.65488 -7.82848 -7.72790 -7.27352 -7.04928 -4.69160 1.24220 1.65555 1.83600 2.32544 2.53587 2.78816 2.93844 2.97161 2.98596 3.31130 3.35744 3.70886 3.80243 4.31805 4.73247 5.12278 5.22109 5.89740 6.04251 6.21754 6.46767 6.59492 6.84624 6.91625 7.03970 7.24303 7.51809 7.70654 8.06777 8.19251 8.40487 8.49107 9.82013 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.019130 B = 0.007652 C = 0.005562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.293204 B = 3658.263662 C = 5032.963192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C 0.274 3.726 3 C 0.001 3.999 4 C -0.059 4.059 5 C 0.107 3.893 6 C -0.441 4.441 7 H 0.091 0.909 8 C 0.073 3.927 9 N -0.787 5.787 10 Si 0.916 3.084 11 H -0.264 1.264 12 H -0.276 1.276 13 H -0.258 1.258 14 C -0.180 4.180 15 C -0.018 4.018 16 C -0.100 4.100 17 S -0.110 6.110 18 C -0.143 4.143 19 S 0.060 5.940 20 C -0.205 4.205 21 H 0.139 0.861 22 H 0.289 0.711 23 H 0.115 0.885 24 H 0.068 0.932 25 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.889 -5.632 -0.378 6.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.133 5.133 2 C -0.040 4.040 3 C -0.007 4.007 4 C -0.083 4.083 5 C 0.103 3.897 6 C -0.470 4.470 7 H 0.109 0.891 8 C -0.147 4.147 9 N -0.411 5.411 10 Si 0.740 3.260 11 H -0.189 1.189 12 H -0.201 1.201 13 H -0.182 1.182 14 C -0.203 4.203 15 C -0.026 4.026 16 C -0.227 4.227 17 S 0.045 5.955 18 C -0.281 4.281 19 S 0.321 5.679 20 C -0.323 4.323 21 H 0.156 0.844 22 H 0.100 0.900 23 H 0.133 0.867 24 H 0.032 0.968 25 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 1.423 -6.357 -0.335 6.523 hybrid contribution 1.146 1.657 0.810 2.172 sum 2.569 -4.699 0.474 5.377 Atomic orbital electron populations 1.81079 1.12294 1.08839 1.11108 1.26110 0.93068 0.92396 0.92401 1.15165 0.82695 0.93027 1.09852 1.21613 0.95019 0.94585 0.97042 1.17307 0.90755 0.92666 0.88927 1.19648 1.01773 0.89527 1.36062 0.89076 1.26026 0.94175 1.01993 0.92517 1.69788 1.17821 1.29948 1.23533 0.86150 0.80695 0.79484 0.79683 1.18894 1.20093 1.18169 1.20955 0.98637 0.90122 1.10582 1.18651 0.90624 0.92034 1.01303 1.20897 0.95088 0.94900 1.11848 1.85584 1.04928 1.91936 1.13082 1.25360 0.96009 1.02529 1.04179 1.83756 1.05757 1.00532 1.77851 1.21674 0.95488 0.94350 1.20808 0.84357 0.90003 0.86660 0.96800 0.81719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -9.95 18.54 41.84 0.78 -9.17 15 2 C 0.27 5.88 15.03 -22.47 -0.34 5.54 15 3 C 0.00 0.01 5.75 -106.60 -0.61 -0.60 15 4 C -0.06 -1.34 8.33 -38.61 -0.32 -1.66 15 5 C 0.11 2.47 5.55 -107.08 -0.59 1.87 15 6 C -0.44 -10.03 9.02 -37.84 -0.34 -10.37 15 7 H 0.09 1.97 7.91 -52.49 -0.41 1.55 15 8 C 0.07 1.59 5.12 -17.36 -0.09 1.50 15 9 N -0.79 -17.95 10.97 55.54 0.61 -17.34 15 10 Si 0.92 16.50 29.60 -169.99 -5.03 11.47 15 11 H -0.26 -4.75 7.11 56.52 0.40 -4.35 15 12 H -0.28 -4.95 7.11 56.52 0.40 -4.54 15 13 H -0.26 -4.59 7.11 56.52 0.40 -4.19 15 14 C -0.18 -3.88 9.57 -38.11 -0.36 -4.24 15 15 C -0.02 -0.38 6.02 -105.32 -0.63 -1.01 15 16 C -0.10 -1.77 6.21 -38.39 -0.24 -2.01 15 17 S -0.11 -1.68 25.69 -107.50 -2.76 -4.44 15 18 C -0.14 -2.26 10.81 28.81 0.31 -1.95 15 19 S 0.06 1.04 22.91 -107.50 -2.46 -1.42 15 20 C -0.21 -4.25 6.37 -37.55 -0.24 -4.49 15 21 H 0.14 3.23 6.16 -52.49 -0.32 2.91 15 22 H 0.29 6.03 8.30 -40.82 -0.34 5.69 15 23 H 0.12 2.36 7.96 -52.48 -0.42 1.94 15 24 H 0.07 0.98 9.07 97.61 0.89 1.86 15 25 H 0.17 2.04 8.06 -52.48 -0.42 1.62 15 LS Contribution 264.25 15.07 3.98 3.98 Total: -1.00 -23.67 264.25 -8.18 -31.85 By element: Atomic # 1 Polarization: 2.32 SS G_CDS: 0.17 Total: 2.49 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: -3.46 Total: -17.42 kcal Atomic # 7 Polarization: -27.89 SS G_CDS: 1.38 Total: -26.51 kcal Atomic # 14 Polarization: 16.50 SS G_CDS: -5.03 Total: 11.47 kcal Atomic # 16 Polarization: -0.64 SS G_CDS: -5.22 Total: -5.86 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -23.67 -8.18 -31.85 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396214005.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.496 kcal (2) G-P(sol) polarization free energy of solvation -23.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds