Wall clock time and date at job start Mon Mar 30 2020 07:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.38290 * 119.82252 * 171.25383 * 3 2 1 5 5 C 1.40748 * 119.78107 * 179.97438 * 4 3 2 6 6 C 1.41305 * 119.96779 * 179.97438 * 5 4 3 7 7 H 1.08001 * 119.99877 * 204.83680 * 6 5 4 8 8 C 1.39775 * 120.00316 * 24.82511 * 6 5 4 9 9 N 1.30941 * 119.99978 * 18.05301 * 8 6 5 10 10 Si 1.86799 * 120.00365 * 198.04878 * 8 6 5 11 11 H 1.48505 * 109.46732 * 90.00585 * 10 8 6 12 12 H 1.48499 * 109.47165 * 210.00331 * 10 8 6 13 13 H 1.48497 * 109.47473 * 330.00645 * 10 8 6 14 14 C 1.40113 * 120.06571 * 0.02562 * 5 4 3 15 15 C 1.40295 * 120.49563 * 359.97438 * 14 5 4 16 16 C 1.46032 * 129.02452 * 179.97438 * 15 14 5 17 17 S 1.76199 * 122.63959 * 359.97438 * 16 15 14 18 18 C 1.32199 * 114.71748 * 180.02562 * 16 15 14 19 19 S 1.75236 * 111.49654 * 359.97438 * 18 16 15 20 20 C 1.40055 * 119.24733 * 359.97438 * 15 14 5 21 21 H 1.08001 * 120.11726 * 0.02562 * 4 3 2 22 22 H 0.96994 * 120.00487 * 179.97438 * 9 8 6 23 23 H 1.08004 * 119.75405 * 179.97438 * 14 5 4 24 24 H 1.34504 * 102.99943 * 89.99918 * 17 16 15 25 25 H 1.08003 * 124.25250 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2553 1.1868 -0.1824 5 6 4.6627 1.1865 -0.1817 6 6 5.3689 2.3961 -0.3683 7 1 6.3742 2.3792 -0.7628 8 6 4.7664 3.6146 -0.0427 9 7 3.7213 3.6381 0.7459 10 14 5.4521 5.2095 -0.7322 11 1 4.7918 5.5131 -2.0272 12 1 5.1943 6.3143 0.2260 13 1 6.9153 5.0689 -0.9435 14 6 5.3644 -0.0122 0.0027 15 6 4.6745 -1.2196 0.1884 16 6 5.2102 -2.5624 0.3945 17 16 6.9391 -2.8985 0.4449 18 6 4.2958 -3.5062 0.5393 19 16 2.6741 -2.8498 0.4391 20 6 3.2739 -1.2146 0.1881 21 1 2.7139 2.1105 -0.3242 22 1 3.3034 4.4836 0.9722 23 1 6.4444 -0.0067 0.0020 24 1 7.2369 -2.7569 1.7489 25 1 4.5201 -4.5505 0.6991 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396214005.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:29:05 Heat of formation + Delta-G solvation = 50.874719 kcal Electronic energy + Delta-G solvation = -13954.496359 eV Core-core repulsion = 11535.772761 eV Total energy + Delta-G solvation = -2418.723598 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.12918 -37.67539 -36.74745 -34.75084 -32.21447 -30.28722 -27.48053 -24.70286 -24.22210 -21.91182 -20.36705 -18.57309 -18.16990 -17.67146 -17.00849 -16.32527 -16.04101 -15.33049 -15.13915 -15.02061 -14.14156 -14.08934 -14.02093 -13.71423 -13.25351 -13.18225 -12.80633 -12.56062 -12.23664 -12.05741 -11.88111 -11.53859 -11.40692 -11.00762 -10.21710 -9.33429 -9.02499 -8.85776 -8.62271 -6.40219 -0.19417 0.18209 0.33369 0.85924 1.01982 1.37953 1.45648 1.55486 1.57715 1.58309 1.99716 2.20740 2.21681 2.65291 3.02187 3.50878 3.79108 4.39491 4.58593 4.73358 4.82055 4.98346 5.19568 5.24380 5.38444 5.56650 5.84360 6.02211 6.34379 6.47790 6.72214 6.79829 8.20966 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.019130 B = 0.007652 C = 0.005562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.293204 B = 3658.263662 C = 5032.963192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C 0.280 3.720 3 C -0.004 4.004 4 C -0.077 4.077 5 C 0.087 3.913 6 C -0.469 4.469 7 H 0.095 0.905 8 C 0.039 3.961 9 N -0.820 5.820 10 Si 0.982 3.018 11 H -0.263 1.263 12 H -0.273 1.273 13 H -0.252 1.252 14 C -0.186 4.186 15 C -0.026 4.026 16 C -0.128 4.128 17 S -0.089 6.089 18 C -0.115 4.115 19 S 0.083 5.917 20 C -0.224 4.224 21 H 0.125 0.875 22 H 0.294 0.706 23 H 0.121 0.879 24 H 0.075 0.925 25 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.691 -7.018 -0.347 8.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.140 5.140 2 C -0.033 4.033 3 C -0.012 4.012 4 C -0.101 4.101 5 C 0.083 3.917 6 C -0.498 4.498 7 H 0.113 0.887 8 C -0.178 4.178 9 N -0.445 5.445 10 Si 0.803 3.197 11 H -0.188 1.188 12 H -0.198 1.198 13 H -0.176 1.176 14 C -0.209 4.209 15 C -0.034 4.034 16 C -0.254 4.254 17 S 0.065 5.935 18 C -0.252 4.252 19 S 0.344 5.656 20 C -0.342 4.342 21 H 0.143 0.857 22 H 0.105 0.895 23 H 0.139 0.861 24 H 0.039 0.961 25 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 2.226 -7.758 -0.303 8.077 hybrid contribution 0.888 1.899 0.837 2.258 sum 3.114 -5.859 0.534 6.656 Atomic orbital electron populations 1.81067 1.12354 1.09172 1.11428 1.26090 0.92986 0.92102 0.92156 1.15226 0.82714 0.93418 1.09829 1.21487 0.95171 0.94573 0.98826 1.17565 0.91059 0.93554 0.89532 1.19881 1.02286 0.90260 1.37350 0.88734 1.26767 0.94197 1.04642 0.92151 1.69839 1.19077 1.30921 1.24640 0.85163 0.80150 0.75588 0.78791 1.18757 1.19762 1.17556 1.21083 0.98976 0.90359 1.10443 1.18988 0.90779 0.93187 1.00465 1.20960 0.97103 0.93778 1.13574 1.85509 1.02904 1.91392 1.13669 1.25849 0.94434 1.04045 1.00850 1.83698 1.06680 0.97776 1.77443 1.22005 0.96096 0.95911 1.20213 0.85739 0.89542 0.86106 0.96063 0.77555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -20.12 18.54 19.00 0.35 -19.76 15 2 C 0.28 12.09 15.03 88.33 1.33 13.42 15 3 C 0.00 -0.17 5.75 -21.14 -0.12 -0.29 15 4 C -0.08 -3.62 8.33 22.90 0.19 -3.43 15 5 C 0.09 4.10 5.55 -21.46 -0.12 3.98 15 6 C -0.47 -21.83 9.02 23.40 0.21 -21.62 15 7 H 0.09 4.16 7.91 -2.91 -0.02 4.14 15 8 C 0.04 1.73 5.12 85.20 0.44 2.17 15 9 N -0.82 -38.45 10.97 21.80 0.24 -38.21 15 10 Si 0.98 33.94 29.60 68.60 2.03 35.97 15 11 H -0.26 -8.95 7.11 99.48 0.71 -8.25 15 12 H -0.27 -9.20 7.11 99.48 0.71 -8.49 15 13 H -0.25 -8.39 7.11 99.48 0.71 -7.68 15 14 C -0.19 -8.06 9.57 23.23 0.22 -7.84 15 15 C -0.03 -1.04 6.02 -20.32 -0.12 -1.17 15 16 C -0.13 -4.21 6.21 23.27 0.14 -4.07 15 17 S -0.09 -2.49 25.69 -56.49 -1.45 -3.94 15 18 C -0.11 -3.20 10.81 66.80 0.72 -2.48 15 19 S 0.08 2.70 22.91 -56.49 -1.29 1.41 15 20 C -0.22 -9.16 6.37 23.59 0.15 -9.01 15 21 H 0.12 6.11 6.16 -2.91 -0.02 6.10 15 22 H 0.29 12.56 8.30 -92.71 -0.77 11.79 15 23 H 0.12 4.96 7.96 -2.91 -0.02 4.94 15 24 H 0.08 1.96 9.07 73.35 0.67 2.63 15 25 H 0.21 4.01 8.06 -2.91 -0.02 3.98 15 Total: -1.00 -50.57 264.25 4.85 -45.72 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: 1.93 Total: 9.16 kcal Atomic # 6 Polarization: -33.39 SS G_CDS: 3.04 Total: -30.35 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: 0.59 Total: -57.97 kcal Atomic # 14 Polarization: 33.94 SS G_CDS: 2.03 Total: 35.97 kcal Atomic # 16 Polarization: 0.21 SS G_CDS: -2.75 Total: -2.53 kcal Total: -50.57 4.85 -45.72 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396214005.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.596 kcal (2) G-P(sol) polarization free energy of solvation -50.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds