Wall clock time and date at job start Mon Mar 30 2020 07:29:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13604 * 1
3 3 C 1.43201 * 179.97438 * 2 1
4 4 C 1.38290 * 119.82252 * 171.25383 * 3 2 1
5 5 C 1.40748 * 119.78107 * 179.97438 * 4 3 2
6 6 C 1.41305 * 119.96779 * 179.97438 * 5 4 3
7 7 H 1.08001 * 119.99877 * 204.83680 * 6 5 4
8 8 C 1.39775 * 120.00316 * 24.82511 * 6 5 4
9 9 N 1.30941 * 119.99978 * 18.05301 * 8 6 5
10 10 Si 1.86799 * 120.00365 * 198.04878 * 8 6 5
11 11 H 1.48505 * 109.46732 * 90.00585 * 10 8 6
12 12 H 1.48499 * 109.47165 * 210.00331 * 10 8 6
13 13 H 1.48497 * 109.47473 * 330.00645 * 10 8 6
14 14 C 1.40113 * 120.06571 * 0.02562 * 5 4 3
15 15 C 1.40295 * 120.49563 * 359.97438 * 14 5 4
16 16 C 1.46032 * 129.02452 * 179.97438 * 15 14 5
17 17 S 1.76199 * 122.63959 * 359.97438 * 16 15 14
18 18 C 1.32199 * 114.71748 * 180.02562 * 16 15 14
19 19 S 1.75236 * 111.49654 * 359.97438 * 18 16 15
20 20 C 1.40055 * 119.24733 * 359.97438 * 15 14 5
21 21 H 1.08001 * 120.11726 * 0.02562 * 4 3 2
22 22 H 0.96994 * 120.00487 * 179.97438 * 9 8 6
23 23 H 1.08004 * 119.75405 * 179.97438 * 14 5 4
24 24 H 1.34504 * 102.99943 * 89.99918 * 17 16 15
25 25 H 1.08003 * 124.25250 * 179.97438 * 18 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.5681 0.0006 0.0000
4 6 3.2553 1.1868 -0.1824
5 6 4.6627 1.1865 -0.1817
6 6 5.3689 2.3961 -0.3683
7 1 6.3742 2.3792 -0.7628
8 6 4.7664 3.6146 -0.0427
9 7 3.7213 3.6381 0.7459
10 14 5.4521 5.2095 -0.7322
11 1 4.7918 5.5131 -2.0272
12 1 5.1943 6.3143 0.2260
13 1 6.9153 5.0689 -0.9435
14 6 5.3644 -0.0122 0.0027
15 6 4.6745 -1.2196 0.1884
16 6 5.2102 -2.5624 0.3945
17 16 6.9391 -2.8985 0.4449
18 6 4.2958 -3.5062 0.5393
19 16 2.6741 -2.8498 0.4391
20 6 3.2739 -1.2146 0.1881
21 1 2.7139 2.1105 -0.3242
22 1 3.3034 4.4836 0.9722
23 1 6.4444 -0.0067 0.0020
24 1 7.2369 -2.7569 1.7489
25 1 4.5201 -4.5505 0.6991
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000396214005.mol2 25
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:29:05
Heat of formation + Delta-G solvation = 50.874719 kcal
Electronic energy + Delta-G solvation = -13954.496359 eV
Core-core repulsion = 11535.772761 eV
Total energy + Delta-G solvation = -2418.723598 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 260.998 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-40.12918 -37.67539 -36.74745 -34.75084 -32.21447 -30.28722 -27.48053 -24.70286
-24.22210 -21.91182 -20.36705 -18.57309 -18.16990 -17.67146 -17.00849 -16.32527
-16.04101 -15.33049 -15.13915 -15.02061 -14.14156 -14.08934 -14.02093 -13.71423
-13.25351 -13.18225 -12.80633 -12.56062 -12.23664 -12.05741 -11.88111 -11.53859
-11.40692 -11.00762 -10.21710 -9.33429 -9.02499 -8.85776 -8.62271 -6.40219
-0.19417 0.18209 0.33369 0.85924 1.01982 1.37953 1.45648 1.55486
1.57715 1.58309 1.99716 2.20740 2.21681 2.65291 3.02187 3.50878
3.79108 4.39491 4.58593 4.73358 4.82055 4.98346 5.19568 5.24380
5.38444 5.56650 5.84360 6.02211 6.34379 6.47790 6.72214 6.79829
8.20966
Molecular weight = 261.00amu
Principal moments of inertia in cm(-1)
A = 0.019130 B = 0.007652 C = 0.005562
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1463.293204 B = 3658.263662 C = 5032.963192
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.463 5.463
2 C 0.280 3.720
3 C -0.004 4.004
4 C -0.077 4.077
5 C 0.087 3.913
6 C -0.469 4.469
7 H 0.095 0.905
8 C 0.039 3.961
9 N -0.820 5.820
10 Si 0.982 3.018
11 H -0.263 1.263
12 H -0.273 1.273
13 H -0.252 1.252
14 C -0.186 4.186
15 C -0.026 4.026
16 C -0.128 4.128
17 S -0.089 6.089
18 C -0.115 4.115
19 S 0.083 5.917
20 C -0.224 4.224
21 H 0.125 0.875
22 H 0.294 0.706
23 H 0.121 0.879
24 H 0.075 0.925
25 H 0.208 0.792
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.691 -7.018 -0.347 8.448
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.140 5.140
2 C -0.033 4.033
3 C -0.012 4.012
4 C -0.101 4.101
5 C 0.083 3.917
6 C -0.498 4.498
7 H 0.113 0.887
8 C -0.178 4.178
9 N -0.445 5.445
10 Si 0.803 3.197
11 H -0.188 1.188
12 H -0.198 1.198
13 H -0.176 1.176
14 C -0.209 4.209
15 C -0.034 4.034
16 C -0.254 4.254
17 S 0.065 5.935
18 C -0.252 4.252
19 S 0.344 5.656
20 C -0.342 4.342
21 H 0.143 0.857
22 H 0.105 0.895
23 H 0.139 0.861
24 H 0.039 0.961
25 H 0.224 0.776
Dipole moment (debyes) X Y Z Total
from point charges 2.226 -7.758 -0.303 8.077
hybrid contribution 0.888 1.899 0.837 2.258
sum 3.114 -5.859 0.534 6.656
Atomic orbital electron populations
1.81067 1.12354 1.09172 1.11428 1.26090 0.92986 0.92102 0.92156
1.15226 0.82714 0.93418 1.09829 1.21487 0.95171 0.94573 0.98826
1.17565 0.91059 0.93554 0.89532 1.19881 1.02286 0.90260 1.37350
0.88734 1.26767 0.94197 1.04642 0.92151 1.69839 1.19077 1.30921
1.24640 0.85163 0.80150 0.75588 0.78791 1.18757 1.19762 1.17556
1.21083 0.98976 0.90359 1.10443 1.18988 0.90779 0.93187 1.00465
1.20960 0.97103 0.93778 1.13574 1.85509 1.02904 1.91392 1.13669
1.25849 0.94434 1.04045 1.00850 1.83698 1.06680 0.97776 1.77443
1.22005 0.96096 0.95911 1.20213 0.85739 0.89542 0.86106 0.96063
0.77555
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.46 -20.12 18.54 19.00 0.35 -19.76 15
2 C 0.28 12.09 15.03 88.33 1.33 13.42 15
3 C 0.00 -0.17 5.75 -21.14 -0.12 -0.29 15
4 C -0.08 -3.62 8.33 22.90 0.19 -3.43 15
5 C 0.09 4.10 5.55 -21.46 -0.12 3.98 15
6 C -0.47 -21.83 9.02 23.40 0.21 -21.62 15
7 H 0.09 4.16 7.91 -2.91 -0.02 4.14 15
8 C 0.04 1.73 5.12 85.20 0.44 2.17 15
9 N -0.82 -38.45 10.97 21.80 0.24 -38.21 15
10 Si 0.98 33.94 29.60 68.60 2.03 35.97 15
11 H -0.26 -8.95 7.11 99.48 0.71 -8.25 15
12 H -0.27 -9.20 7.11 99.48 0.71 -8.49 15
13 H -0.25 -8.39 7.11 99.48 0.71 -7.68 15
14 C -0.19 -8.06 9.57 23.23 0.22 -7.84 15
15 C -0.03 -1.04 6.02 -20.32 -0.12 -1.17 15
16 C -0.13 -4.21 6.21 23.27 0.14 -4.07 15
17 S -0.09 -2.49 25.69 -56.49 -1.45 -3.94 15
18 C -0.11 -3.20 10.81 66.80 0.72 -2.48 15
19 S 0.08 2.70 22.91 -56.49 -1.29 1.41 15
20 C -0.22 -9.16 6.37 23.59 0.15 -9.01 15
21 H 0.12 6.11 6.16 -2.91 -0.02 6.10 15
22 H 0.29 12.56 8.30 -92.71 -0.77 11.79 15
23 H 0.12 4.96 7.96 -2.91 -0.02 4.94 15
24 H 0.08 1.96 9.07 73.35 0.67 2.63 15
25 H 0.21 4.01 8.06 -2.91 -0.02 3.98 15
Total: -1.00 -50.57 264.25 4.85 -45.72
By element:
Atomic # 1 Polarization: 7.23 SS G_CDS: 1.93 Total: 9.16 kcal
Atomic # 6 Polarization: -33.39 SS G_CDS: 3.04 Total: -30.35 kcal
Atomic # 7 Polarization: -58.56 SS G_CDS: 0.59 Total: -57.97 kcal
Atomic # 14 Polarization: 33.94 SS G_CDS: 2.03 Total: 35.97 kcal
Atomic # 16 Polarization: 0.21 SS G_CDS: -2.75 Total: -2.53 kcal
Total: -50.57 4.85 -45.72 kcal
The number of atoms in the molecule is 25
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000396214005.mol2 25
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 96.596 kcal
(2) G-P(sol) polarization free energy of solvation -50.570 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.027 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.848 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.722 kcal
(6) G-S(sol) free energy of system = (1) + (5) 50.875 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds