Wall clock time and date at job start Mon Mar 30 2020 07:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.40848 * 120.31924 * 74.40314 * 3 2 1 5 5 S 1.76076 * 130.26001 * 359.97438 * 4 3 2 6 6 C 1.75481 * 91.49746 * 179.97438 * 5 4 3 7 7 C 1.32526 * 110.72278 * 359.97438 * 6 5 4 8 8 C 1.39823 * 120.24265 * 179.97438 * 4 3 2 9 9 C 1.42774 * 119.48308 * 0.04239 * 8 4 3 10 10 S 1.76191 * 119.16912 * 180.02562 * 9 8 4 11 11 C 1.36955 * 121.66248 * 359.64381 * 9 8 4 12 12 C 1.40909 * 120.37047 * 0.61867 * 11 9 8 13 13 C 1.40428 * 120.56195 * 179.71638 * 12 11 9 14 14 H 1.08001 * 119.99882 * 156.01140 * 13 12 11 15 15 C 1.40140 * 120.00020 * 335.74443 * 13 12 11 16 16 N 1.30721 * 119.99787 * 341.58148 * 15 13 12 17 17 Si 1.86802 * 120.00022 * 161.58471 * 15 13 12 18 18 H 1.48501 * 109.46823 * 90.00087 * 17 15 13 19 19 H 1.48502 * 109.46973 * 209.99731 * 17 15 13 20 20 H 1.48491 * 109.47017 * 329.99859 * 17 15 13 21 21 H 1.07997 * 124.63788 * 180.02562 * 6 5 4 22 22 H 1.08008 * 122.03232 * 179.97438 * 7 6 5 23 23 H 1.34508 * 103.00065 * 89.99787 * 10 9 8 24 24 H 1.07996 * 119.81778 * 180.31212 * 11 9 8 25 25 H 0.97004 * 119.99944 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2791 -0.3259 -1.1711 5 16 2.6939 -0.7733 -2.7703 6 6 4.3331 -0.9397 -3.3741 7 6 5.2136 -0.6718 -2.4206 8 6 4.6774 -0.3243 -1.1694 9 6 5.3783 0.0101 0.0287 10 16 7.1401 0.0102 0.0213 11 6 4.7156 0.3382 1.1815 12 6 3.3070 0.3414 1.2172 13 6 2.6234 0.6714 2.3987 14 1 1.6123 1.0479 2.3503 15 6 3.2513 0.5069 3.6407 16 7 4.2988 -0.2679 3.7460 17 14 2.5912 1.3948 5.1458 18 1 1.5823 0.5402 5.8218 19 1 3.7079 1.6779 6.0829 20 1 1.9587 2.6721 4.7292 21 1 4.5894 -1.2212 -4.3848 22 1 6.2785 -0.7193 -2.5944 23 1 7.4412 1.2728 -0.3315 24 1 5.2758 0.5911 2.0695 25 1 4.7332 -0.3821 4.6058 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396214159.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:15 Heat of formation + Delta-G solvation = 57.887977 kcal Electronic energy + Delta-G solvation = -14115.151116 eV Core-core repulsion = 11696.731636 eV Total energy + Delta-G solvation = -2418.419480 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.41017 -35.76502 -35.10293 -33.13965 -30.27925 -29.26317 -25.82891 -23.26564 -22.32988 -19.94989 -18.72368 -17.51618 -16.87896 -15.91216 -15.57910 -14.89956 -14.03641 -13.89671 -13.31011 -13.13730 -12.83379 -12.25359 -12.03578 -11.90900 -11.85081 -11.52797 -11.27595 -11.10590 -10.99327 -10.64040 -10.33142 -10.16748 -9.84335 -9.42029 -8.61934 -7.80063 -7.61126 -7.54139 -7.01720 -5.01227 1.35281 1.92633 2.28802 2.38677 2.61397 2.74014 2.80391 2.81916 3.13957 3.33691 3.44885 3.81538 4.00126 4.21098 5.03986 5.27305 5.60182 6.07850 6.16451 6.29355 6.37195 6.50425 6.66070 6.78667 7.11992 7.25096 7.26839 7.37147 7.73331 7.97920 8.08973 8.70916 9.33218 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.019317 B = 0.008746 C = 0.006136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.150951 B = 3200.772986 C = 4562.019823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C 0.295 3.705 3 C -0.174 4.174 4 C -0.013 4.013 5 S 0.027 5.973 6 C -0.264 4.264 7 C -0.070 4.070 8 C -0.177 4.177 9 C -0.033 4.033 10 S -0.154 6.154 11 C -0.076 4.076 12 C 0.152 3.848 13 C -0.384 4.384 14 H 0.098 0.902 15 C 0.067 3.933 16 N -0.736 5.736 17 Si 0.924 3.076 18 H -0.259 1.259 19 H -0.266 1.266 20 H -0.252 1.252 21 H 0.151 0.849 22 H 0.133 0.867 23 H 0.063 0.937 24 H 0.145 0.855 25 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.119 1.354 -1.455 5.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.178 5.178 2 C -0.014 4.014 3 C -0.188 4.188 4 C -0.133 4.133 5 S 0.287 5.713 6 C -0.397 4.397 7 C -0.099 4.099 8 C -0.187 4.187 9 C -0.147 4.147 10 S 0.004 5.996 11 C -0.098 4.098 12 C 0.141 3.859 13 C -0.410 4.410 14 H 0.116 0.884 15 C -0.160 4.160 16 N -0.355 5.355 17 Si 0.745 3.255 18 H -0.184 1.184 19 H -0.190 1.190 20 H -0.175 1.175 21 H 0.168 0.832 22 H 0.151 0.849 23 H 0.027 0.973 24 H 0.163 0.837 25 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.150 0.806 -1.972 3.803 hybrid contribution 0.810 1.350 0.918 1.822 sum 3.960 2.156 -1.054 4.631 Atomic orbital electron populations 1.81025 1.12364 1.14716 1.09667 1.25509 0.92418 0.91623 0.91865 1.15962 0.83163 1.24964 0.94694 1.22128 0.95425 1.00871 0.94870 1.83942 1.08761 1.74654 1.03901 1.24573 0.94821 1.17193 1.03127 1.19846 1.00052 0.98678 0.91372 1.17549 0.90767 1.16246 0.94120 1.20737 0.92088 1.06753 0.95161 1.85620 1.04465 1.17278 1.92270 1.21717 0.93900 0.98203 0.96002 1.18255 0.90800 0.86851 0.89981 1.19977 1.01255 1.29985 0.89805 0.88399 1.26330 0.94016 0.93469 1.02199 1.69710 1.14383 1.22373 1.29081 0.85985 0.79996 0.80906 0.78585 1.18392 1.18976 1.17493 0.83183 0.84892 0.97273 0.83733 0.88660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -11.97 18.54 41.83 0.78 -11.19 15 2 C 0.30 6.97 13.99 -22.47 -0.31 6.65 15 3 C -0.17 -4.03 5.98 -103.69 -0.62 -4.65 15 4 C -0.01 -0.29 6.34 -38.00 -0.24 -0.53 15 5 S 0.03 0.51 22.99 -107.50 -2.47 -1.96 15 6 C -0.26 -4.55 11.10 28.82 0.32 -4.23 15 7 C -0.07 -1.28 9.65 -40.65 -0.39 -1.67 15 8 C -0.18 -3.72 5.86 -106.71 -0.63 -4.34 15 9 C -0.03 -0.67 6.16 -38.30 -0.24 -0.91 15 10 S -0.15 -2.70 24.96 -107.50 -2.68 -5.38 15 11 C -0.08 -1.66 8.32 -39.04 -0.32 -1.98 15 12 C 0.15 3.48 5.73 -104.77 -0.60 2.88 15 13 C -0.38 -8.56 8.55 -38.04 -0.33 -8.88 15 14 H 0.10 2.19 7.34 -52.49 -0.39 1.80 15 15 C 0.07 1.35 5.13 -17.31 -0.09 1.26 15 16 N -0.74 -15.12 10.98 55.56 0.61 -14.51 15 17 Si 0.92 15.28 29.60 -169.99 -5.03 10.25 15 18 H -0.26 -4.35 7.11 56.52 0.40 -3.95 15 19 H -0.27 -4.19 7.11 56.52 0.40 -3.79 15 20 H -0.25 -4.22 7.11 56.52 0.40 -3.82 15 21 H 0.15 2.12 8.06 -52.49 -0.42 1.69 15 22 H 0.13 2.16 7.68 -52.48 -0.40 1.76 15 23 H 0.06 1.02 9.07 97.61 0.89 1.90 15 24 H 0.15 3.10 6.16 -52.49 -0.32 2.77 15 25 H 0.30 5.45 8.29 -40.82 -0.34 5.11 15 LS Contribution 261.79 15.07 3.95 3.95 Total: -1.00 -23.68 261.79 -8.09 -31.77 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: 0.22 Total: 3.49 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: -3.45 Total: -16.41 kcal Atomic # 7 Polarization: -27.09 SS G_CDS: 1.39 Total: -25.70 kcal Atomic # 14 Polarization: 15.28 SS G_CDS: -5.03 Total: 10.25 kcal Atomic # 16 Polarization: -2.19 SS G_CDS: -5.16 Total: -7.34 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -23.68 -8.09 -31.77 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396214159.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.656 kcal (2) G-P(sol) polarization free energy of solvation -23.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds