Wall clock time and date at job start Mon Mar 30 2020 07:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.40848 * 120.31924 * 74.40314 * 3 2 1 5 5 S 1.76076 * 130.26001 * 359.97438 * 4 3 2 6 6 C 1.75481 * 91.49746 * 179.97438 * 5 4 3 7 7 C 1.32526 * 110.72278 * 359.97438 * 6 5 4 8 8 C 1.39823 * 120.24265 * 179.97438 * 4 3 2 9 9 C 1.42774 * 119.48308 * 0.04239 * 8 4 3 10 10 S 1.76191 * 119.16912 * 180.02562 * 9 8 4 11 11 C 1.36955 * 121.66248 * 359.64381 * 9 8 4 12 12 C 1.40909 * 120.37047 * 0.61867 * 11 9 8 13 13 C 1.40428 * 120.56195 * 179.71638 * 12 11 9 14 14 H 1.08001 * 119.99882 * 156.01140 * 13 12 11 15 15 C 1.40140 * 120.00020 * 335.74443 * 13 12 11 16 16 N 1.30721 * 119.99787 * 341.58148 * 15 13 12 17 17 Si 1.86802 * 120.00022 * 161.58471 * 15 13 12 18 18 H 1.48501 * 109.46823 * 90.00087 * 17 15 13 19 19 H 1.48502 * 109.46973 * 209.99731 * 17 15 13 20 20 H 1.48491 * 109.47017 * 329.99859 * 17 15 13 21 21 H 1.07997 * 124.63788 * 180.02562 * 6 5 4 22 22 H 1.08008 * 122.03232 * 179.97438 * 7 6 5 23 23 H 1.34508 * 103.00065 * 89.99787 * 10 9 8 24 24 H 1.07996 * 119.81778 * 180.31212 * 11 9 8 25 25 H 0.97004 * 119.99944 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2791 -0.3259 -1.1711 5 16 2.6939 -0.7733 -2.7703 6 6 4.3331 -0.9397 -3.3741 7 6 5.2136 -0.6718 -2.4206 8 6 4.6774 -0.3243 -1.1694 9 6 5.3783 0.0101 0.0287 10 16 7.1401 0.0102 0.0213 11 6 4.7156 0.3382 1.1815 12 6 3.3070 0.3414 1.2172 13 6 2.6234 0.6714 2.3987 14 1 1.6123 1.0479 2.3503 15 6 3.2513 0.5069 3.6407 16 7 4.2988 -0.2679 3.7460 17 14 2.5912 1.3948 5.1458 18 1 1.5823 0.5402 5.8218 19 1 3.7079 1.6779 6.0829 20 1 1.9587 2.6721 4.7292 21 1 4.5894 -1.2212 -4.3848 22 1 6.2785 -0.7193 -2.5944 23 1 7.4412 1.2728 -0.3315 24 1 5.2758 0.5911 2.0695 25 1 4.7332 -0.3821 4.6058 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396214159.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:13 Heat of formation + Delta-G solvation = 47.887348 kcal Electronic energy + Delta-G solvation = -14115.584776 eV Core-core repulsion = 11696.731636 eV Total energy + Delta-G solvation = -2418.853140 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -40.00603 -37.43682 -36.80945 -34.70291 -31.92934 -30.85279 -27.42403 -24.90027 -23.91454 -21.48580 -20.30836 -19.10150 -18.41868 -17.42588 -17.09302 -16.44465 -15.52893 -15.48416 -14.96026 -14.69129 -14.32366 -13.91490 -13.73459 -13.62029 -13.36247 -13.09692 -12.75785 -12.64923 -12.47217 -12.10957 -11.84779 -11.68173 -11.37530 -10.96374 -10.20501 -9.40179 -9.13050 -8.95347 -8.58402 -6.68687 -0.22482 0.31812 0.75599 0.86520 1.21282 1.33636 1.36677 1.51501 1.67558 1.89076 1.98326 2.08439 2.40556 2.50968 3.34231 3.54523 4.18728 4.55735 4.61987 4.76519 4.80170 4.92254 5.08096 5.26106 5.48333 5.65527 5.70589 5.80478 6.07087 6.33594 6.44213 6.89058 7.83731 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.019317 B = 0.008746 C = 0.006136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.150951 B = 3200.772986 C = 4562.019823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C 0.299 3.701 3 C -0.205 4.205 4 C -0.040 4.040 5 S 0.025 5.975 6 C -0.237 4.237 7 C -0.084 4.084 8 C -0.182 4.182 9 C -0.043 4.043 10 S -0.128 6.128 11 C -0.087 4.087 12 C 0.133 3.867 13 C -0.408 4.408 14 H 0.086 0.914 15 C 0.041 3.959 16 N -0.754 5.754 17 Si 0.986 3.014 18 H -0.261 1.261 19 H -0.246 1.246 20 H -0.258 1.258 21 H 0.191 0.809 22 H 0.159 0.841 23 H 0.078 0.922 24 H 0.144 0.856 25 H 0.314 0.686 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.801 1.342 -1.893 7.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.202 5.202 2 C -0.009 4.009 3 C -0.218 4.218 4 C -0.160 4.160 5 S 0.286 5.714 6 C -0.370 4.370 7 C -0.113 4.113 8 C -0.192 4.192 9 C -0.158 4.158 10 S 0.029 5.971 11 C -0.109 4.109 12 C 0.122 3.878 13 C -0.433 4.433 14 H 0.104 0.896 15 C -0.185 4.185 16 N -0.374 5.374 17 Si 0.805 3.195 18 H -0.186 1.186 19 H -0.170 1.170 20 H -0.182 1.182 21 H 0.208 0.792 22 H 0.176 0.824 23 H 0.043 0.957 24 H 0.162 0.838 25 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.839 0.784 -2.421 5.467 hybrid contribution 0.399 1.308 0.925 1.651 sum 5.238 2.092 -1.496 5.835 Atomic orbital electron populations 1.80986 1.12748 1.16084 1.10386 1.25744 0.92674 0.91159 0.91324 1.16146 0.82883 1.27011 0.95802 1.22388 0.96266 1.01591 0.95725 1.83959 1.10633 1.74195 1.02631 1.25062 0.92967 1.14498 1.04506 1.20038 1.01543 0.99337 0.90360 1.17963 0.90553 1.15445 0.95259 1.20996 0.94415 1.05635 0.94772 1.85433 1.01129 1.18159 1.92361 1.21707 0.93454 0.99228 0.96539 1.18524 0.91700 0.87253 0.90279 1.20109 1.01155 1.31093 0.90985 0.89624 1.26977 0.94068 0.93663 1.03752 1.69684 1.14786 1.22426 1.30553 0.85088 0.79735 0.79223 0.75468 1.18586 1.16954 1.18154 0.79218 0.82370 0.95744 0.83820 0.87313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -25.85 18.54 19.00 0.35 -25.50 15 2 C 0.30 14.62 13.99 88.33 1.24 15.86 15 3 C -0.20 -9.78 5.98 -19.26 -0.12 -9.90 15 4 C -0.04 -1.77 6.34 23.29 0.15 -1.62 15 5 S 0.03 0.93 22.99 -56.49 -1.30 -0.36 15 6 C -0.24 -7.39 11.10 66.68 0.74 -6.65 15 7 C -0.08 -2.83 9.65 21.68 0.21 -2.62 15 8 C -0.18 -7.44 5.86 -21.21 -0.12 -7.56 15 9 C -0.04 -1.77 6.16 23.10 0.14 -1.63 15 10 S -0.13 -4.21 24.96 -56.49 -1.41 -5.62 15 11 C -0.09 -3.83 8.32 22.62 0.19 -3.65 15 12 C 0.13 6.28 5.73 -19.96 -0.11 6.17 15 13 C -0.41 -18.76 8.55 23.27 0.20 -18.56 15 14 H 0.09 4.03 7.34 -2.91 -0.02 4.00 15 15 C 0.04 1.65 5.13 85.32 0.44 2.09 15 16 N -0.75 -30.88 10.98 21.86 0.24 -30.64 15 17 Si 0.99 30.90 29.60 68.60 2.03 32.93 15 18 H -0.26 -8.23 7.11 99.48 0.71 -7.52 15 19 H -0.25 -6.92 7.11 99.48 0.71 -6.21 15 20 H -0.26 -8.27 7.11 99.48 0.71 -7.56 15 21 H 0.19 4.38 8.06 -2.91 -0.02 4.35 15 22 H 0.16 4.53 7.68 -2.91 -0.02 4.51 15 23 H 0.08 2.32 9.07 73.35 0.67 2.98 15 24 H 0.14 6.20 6.16 -2.91 -0.02 6.18 15 25 H 0.31 11.09 8.29 -92.70 -0.77 10.32 15 Total: -1.00 -51.00 261.79 4.79 -46.21 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: 1.93 Total: 11.06 kcal Atomic # 6 Polarization: -31.02 SS G_CDS: 2.95 Total: -28.07 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: 0.59 Total: -56.14 kcal Atomic # 14 Polarization: 30.90 SS G_CDS: 2.03 Total: 32.93 kcal Atomic # 16 Polarization: -3.28 SS G_CDS: -2.71 Total: -5.99 kcal Total: -51.00 4.79 -46.21 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396214159.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.100 kcal (2) G-P(sol) polarization free energy of solvation -51.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds