Wall clock time and date at job start Mon Mar 30 2020 07:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.35407 * 123.13089 * 102.31290 * 3 2 1 5 5 S 1.70058 * 111.88599 * 180.24254 * 4 3 2 6 6 C 1.75811 * 93.00660 * 359.67605 * 5 4 3 7 7 C 1.38904 * 109.94011 * 0.31862 * 6 5 4 8 8 C 1.47505 * 118.55363 * 179.76872 * 7 6 5 9 9 C 1.40525 * 120.36165 * 180.02562 * 8 7 6 10 10 H 1.08007 * 119.99721 * 331.46573 * 9 8 7 11 11 C 1.39802 * 120.00150 * 151.46556 * 9 8 7 12 12 N 1.30971 * 120.00404 * 345.24972 * 11 9 8 13 13 Si 1.86806 * 119.99871 * 165.25421 * 11 9 8 14 14 H 1.48495 * 109.47373 * 89.99817 * 13 11 9 15 15 H 1.48509 * 109.46917 * 209.99949 * 13 11 9 16 16 H 1.48500 * 109.46879 * 329.99463 * 13 11 9 17 17 C 1.40603 * 119.28449 * 359.97438 * 8 7 6 18 18 C 1.36268 * 120.19033 * 0.02562 * 17 8 7 19 19 C 1.39115 * 121.18664 * 0.02562 * 18 17 8 20 20 S 1.76204 * 119.39828 * 180.02562 * 19 18 17 21 21 H 1.07995 * 124.05594 * 359.97253 * 4 3 2 22 22 H 0.97002 * 120.00426 * 180.02562 * 12 11 9 23 23 H 1.08004 * 119.90445 * 180.02562 * 17 8 7 24 24 H 1.08005 * 119.40055 * 179.97438 * 18 17 8 25 25 H 1.40998 * 99.99727 * 269.97467 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3079 0.2428 -1.1078 5 16 4.9759 0.1663 -0.7853 6 6 4.7242 -0.1982 0.9161 7 6 3.3640 -0.2590 1.1914 8 6 2.9366 -0.5601 2.5706 9 6 1.5703 -0.6313 2.8913 10 1 0.8528 -0.0520 2.3290 11 6 1.1397 -1.4519 3.9380 12 7 1.9424 -2.3632 4.4285 13 14 -0.5806 -1.2486 4.6372 14 1 -1.5233 -2.1231 3.8944 15 1 -0.5796 -1.6285 6.0728 16 1 -1.0064 0.1674 4.5002 17 6 3.9110 -0.7763 3.5609 18 6 5.2350 -0.7070 3.2462 19 6 5.6535 -0.4229 1.9502 20 16 7.3777 -0.3454 1.5955 21 1 2.8891 0.4545 -2.0805 22 1 1.6435 -2.9328 5.1546 23 1 3.6092 -0.9979 4.5740 24 1 5.9727 -0.8748 4.0170 25 1 7.6174 1.0218 1.8430 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396214166.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:01 Heat of formation + Delta-G solvation = 59.594070 kcal Electronic energy + Delta-G solvation = -14207.692514 eV Core-core repulsion = 11789.347015 eV Total energy + Delta-G solvation = -2418.345498 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.35183 -36.04756 -34.65718 -33.56809 -30.13742 -28.71465 -25.70583 -24.05750 -21.64467 -20.84855 -18.33746 -17.46651 -16.30162 -15.94193 -15.26570 -14.69473 -14.29455 -13.87610 -13.52786 -13.17635 -12.67624 -12.43263 -12.32763 -11.83304 -11.66469 -11.57927 -11.44337 -11.14890 -10.74378 -10.57010 -10.21683 -9.97636 -9.74799 -9.47433 -8.37808 -7.73466 -7.47766 -7.33963 -7.05539 -4.86608 1.36957 2.01455 2.23461 2.61474 2.63257 2.72522 2.82543 2.87083 2.95284 3.37952 3.48926 3.58192 4.05991 4.18155 4.85423 5.11522 5.39461 5.99234 6.05437 6.45233 6.50883 6.59371 6.72612 6.89065 7.07921 7.39352 7.51158 7.66227 8.06681 8.15632 8.21881 8.34585 9.54659 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.020757 B = 0.008732 C = 0.006264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.628114 B = 3205.685651 C = 4468.690333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C 0.294 3.706 3 C 0.009 3.991 4 C -0.255 4.255 5 S 0.152 5.848 6 C -0.048 4.048 7 C -0.162 4.162 8 C 0.164 3.836 9 C -0.405 4.405 10 H 0.092 0.908 11 C 0.071 3.929 12 N -0.748 5.748 13 Si 0.916 3.084 14 H -0.261 1.261 15 H -0.267 1.267 16 H -0.254 1.254 17 C -0.191 4.191 18 C -0.012 4.012 19 C -0.223 4.223 20 S -0.176 6.176 21 H 0.160 0.840 22 H 0.294 0.706 23 H 0.127 0.873 24 H 0.107 0.893 25 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.493 2.291 -2.276 4.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.121 5.121 2 C -0.021 4.021 3 C -0.009 4.009 4 C -0.395 4.395 5 S 0.418 5.582 6 C -0.167 4.167 7 C -0.170 4.170 8 C 0.158 3.842 9 C -0.431 4.431 10 H 0.110 0.890 11 C -0.154 4.154 12 N -0.368 5.368 13 Si 0.738 3.262 14 H -0.186 1.186 15 H -0.192 1.192 16 H -0.177 1.177 17 C -0.214 4.214 18 C -0.036 4.036 19 C -0.343 4.343 20 S -0.019 6.019 21 H 0.177 0.823 22 H 0.106 0.894 23 H 0.144 0.856 24 H 0.125 0.875 25 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges 3.937 2.095 -3.304 5.550 hybrid contribution -2.520 0.583 1.569 3.025 sum 1.417 2.678 -1.735 3.492 Atomic orbital electron populations 1.81092 1.12058 1.09794 1.09202 1.25149 0.92129 0.92899 0.91971 1.15876 0.84728 1.06727 0.93578 1.24704 0.99918 1.13228 1.01646 1.82612 1.00589 1.72389 1.02570 1.22362 0.95738 1.02777 0.95780 1.19577 0.89675 1.15016 0.92758 1.18442 0.93326 0.85327 0.87155 1.19913 0.93549 1.18789 1.10848 0.89004 1.26146 1.01077 0.93254 0.94885 1.69855 1.37116 1.11081 1.18782 0.86117 0.80352 0.81010 0.78696 1.18575 1.19180 1.17714 1.20728 0.90950 1.10298 0.99456 1.20544 0.95997 0.93708 0.93310 1.19317 0.90374 1.29292 0.95317 1.86354 1.09851 1.14532 1.91120 0.82268 0.89428 0.85556 0.87501 0.97363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -9.64 18.18 41.84 0.76 -8.88 15 2 C 0.29 6.18 13.12 -22.47 -0.29 5.88 15 3 C 0.01 0.19 5.85 -106.04 -0.62 -0.43 15 4 C -0.26 -4.38 10.65 29.72 0.32 -4.06 15 5 S 0.15 2.59 22.60 -107.50 -2.43 0.16 15 6 C -0.05 -1.01 6.33 -38.35 -0.24 -1.26 15 7 C -0.16 -3.64 6.19 -102.93 -0.64 -4.28 15 8 C 0.16 3.91 5.71 -104.37 -0.60 3.31 15 9 C -0.41 -9.66 8.31 -38.14 -0.32 -9.98 15 10 H 0.09 2.21 5.71 -52.48 -0.30 1.91 15 11 C 0.07 1.59 5.17 -17.33 -0.09 1.50 15 12 N -0.75 -16.84 11.04 55.54 0.61 -16.23 15 13 Si 0.92 17.22 29.58 -169.99 -5.03 12.19 15 14 H -0.26 -5.00 7.11 56.52 0.40 -4.60 15 15 H -0.27 -4.74 7.11 56.52 0.40 -4.34 15 16 H -0.25 -4.84 7.11 56.52 0.40 -4.44 15 17 C -0.19 -4.38 8.58 -39.40 -0.34 -4.72 15 18 C -0.01 -0.26 9.62 -39.97 -0.38 -0.65 15 19 C -0.22 -4.68 6.17 -38.27 -0.24 -4.91 15 20 S -0.18 -3.19 25.42 -107.50 -2.73 -5.92 15 21 H 0.16 2.23 8.06 -52.49 -0.42 1.80 15 22 H 0.29 5.92 8.30 -40.82 -0.34 5.58 15 23 H 0.13 2.90 6.33 -52.48 -0.33 2.57 15 24 H 0.11 2.03 8.06 -52.48 -0.42 1.61 15 25 H 0.06 1.04 9.55 96.90 0.93 1.97 15 LS Contribution 259.83 15.07 3.92 3.92 Total: -1.00 -24.25 259.83 -8.03 -32.28 By element: Atomic # 1 Polarization: 1.75 SS G_CDS: 0.31 Total: 2.06 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: -3.44 Total: -19.59 kcal Atomic # 7 Polarization: -26.48 SS G_CDS: 1.37 Total: -25.11 kcal Atomic # 14 Polarization: 17.22 SS G_CDS: -5.03 Total: 12.19 kcal Atomic # 16 Polarization: -0.60 SS G_CDS: -5.16 Total: -5.76 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -24.25 -8.03 -32.28 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396214166.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.875 kcal (2) G-P(sol) polarization free energy of solvation -24.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds