Wall clock time and date at job start Mon Mar 30 2020 07:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.35407 * 123.13089 * 102.31290 * 3 2 1 5 5 S 1.70058 * 111.88599 * 180.24254 * 4 3 2 6 6 C 1.75811 * 93.00660 * 359.67605 * 5 4 3 7 7 C 1.38904 * 109.94011 * 0.31862 * 6 5 4 8 8 C 1.47505 * 118.55363 * 179.76872 * 7 6 5 9 9 C 1.40525 * 120.36165 * 180.02562 * 8 7 6 10 10 H 1.08007 * 119.99721 * 331.46573 * 9 8 7 11 11 C 1.39802 * 120.00150 * 151.46556 * 9 8 7 12 12 N 1.30971 * 120.00404 * 345.24972 * 11 9 8 13 13 Si 1.86806 * 119.99871 * 165.25421 * 11 9 8 14 14 H 1.48495 * 109.47373 * 89.99817 * 13 11 9 15 15 H 1.48509 * 109.46917 * 209.99949 * 13 11 9 16 16 H 1.48500 * 109.46879 * 329.99463 * 13 11 9 17 17 C 1.40603 * 119.28449 * 359.97438 * 8 7 6 18 18 C 1.36268 * 120.19033 * 0.02562 * 17 8 7 19 19 C 1.39115 * 121.18664 * 0.02562 * 18 17 8 20 20 S 1.76204 * 119.39828 * 180.02562 * 19 18 17 21 21 H 1.07995 * 124.05594 * 359.97253 * 4 3 2 22 22 H 0.97002 * 120.00426 * 180.02562 * 12 11 9 23 23 H 1.08004 * 119.90445 * 180.02562 * 17 8 7 24 24 H 1.08005 * 119.40055 * 179.97438 * 18 17 8 25 25 H 1.40998 * 99.99727 * 269.97467 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3079 0.2428 -1.1078 5 16 4.9759 0.1663 -0.7853 6 6 4.7242 -0.1982 0.9161 7 6 3.3640 -0.2590 1.1914 8 6 2.9366 -0.5601 2.5706 9 6 1.5703 -0.6313 2.8913 10 1 0.8528 -0.0520 2.3290 11 6 1.1397 -1.4519 3.9380 12 7 1.9424 -2.3632 4.4285 13 14 -0.5806 -1.2486 4.6372 14 1 -1.5233 -2.1231 3.8944 15 1 -0.5796 -1.6285 6.0728 16 1 -1.0064 0.1674 4.5002 17 6 3.9110 -0.7763 3.5609 18 6 5.2350 -0.7070 3.2462 19 6 5.6535 -0.4229 1.9502 20 16 7.3777 -0.3454 1.5955 21 1 2.8891 0.4545 -2.0805 22 1 1.6435 -2.9328 5.1546 23 1 3.6092 -0.9979 4.5740 24 1 5.9727 -0.8748 4.0170 25 1 7.6174 1.0218 1.8430 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396214166.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:00 Heat of formation + Delta-G solvation = 48.732159 kcal Electronic energy + Delta-G solvation = -14208.163522 eV Core-core repulsion = 11789.347015 eV Total energy + Delta-G solvation = -2418.816506 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.95692 -37.67367 -36.27937 -35.17807 -31.79736 -30.32039 -27.37133 -25.60146 -23.27927 -22.49635 -19.94996 -19.03946 -17.82653 -17.53039 -16.78617 -16.28112 -15.87910 -15.47501 -15.13751 -14.73278 -14.25527 -14.05486 -13.93984 -13.41497 -13.30307 -13.13329 -13.00168 -12.69044 -12.23875 -12.08690 -11.79057 -11.61752 -11.34552 -11.05992 -9.97216 -9.33847 -8.98238 -8.90161 -8.58633 -6.56649 -0.16153 0.44284 0.73819 0.96360 1.09875 1.21572 1.27567 1.37207 1.42075 1.76350 1.96332 2.04596 2.43851 2.54540 3.30988 3.42178 3.94584 4.38902 4.55722 4.84272 4.87845 5.01610 5.06814 5.28292 5.42850 5.72533 5.82872 5.96636 6.38324 6.53045 6.55786 6.66992 7.96377 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.020757 B = 0.008732 C = 0.006264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.628114 B = 3205.685651 C = 4468.690333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C 0.303 3.697 3 C -0.031 4.031 4 C -0.217 4.217 5 S 0.231 5.769 6 C -0.083 4.083 7 C -0.177 4.177 8 C 0.139 3.861 9 C -0.442 4.442 10 H 0.080 0.920 11 C 0.042 3.958 12 N -0.777 5.777 13 Si 0.970 3.030 14 H -0.266 1.266 15 H -0.247 1.247 16 H -0.262 1.262 17 C -0.211 4.211 18 C -0.016 4.016 19 C -0.232 4.232 20 S -0.153 6.153 21 H 0.200 0.800 22 H 0.302 0.698 23 H 0.115 0.885 24 H 0.124 0.876 25 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.881 2.841 -3.906 6.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.147 5.147 2 C -0.012 4.012 3 C -0.050 4.050 4 C -0.357 4.357 5 S 0.498 5.502 6 C -0.201 4.201 7 C -0.186 4.186 8 C 0.133 3.867 9 C -0.468 4.468 10 H 0.098 0.902 11 C -0.180 4.180 12 N -0.399 5.399 13 Si 0.790 3.210 14 H -0.191 1.191 15 H -0.171 1.171 16 H -0.186 1.186 17 C -0.234 4.234 18 C -0.039 4.039 19 C -0.352 4.352 20 S 0.004 5.996 21 H 0.217 0.783 22 H 0.114 0.886 23 H 0.133 0.867 24 H 0.142 0.858 25 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 5.346 2.640 -4.924 7.733 hybrid contribution -2.681 0.493 1.846 3.292 sum 2.666 3.133 -3.077 5.137 Atomic orbital electron populations 1.81073 1.12667 1.11123 1.09867 1.25304 0.92328 0.92159 0.91379 1.15909 0.84474 1.10488 0.94114 1.25332 1.00340 1.07859 1.02217 1.82365 0.99208 1.70118 0.98478 1.22762 0.95341 1.03400 0.98627 1.19865 0.90991 1.14794 0.92949 1.18753 0.93702 0.85903 0.88334 1.19941 0.93631 1.20619 1.12634 0.90195 1.26723 1.03848 0.92649 0.94733 1.69859 1.38532 1.11805 1.19659 0.85351 0.76510 0.80124 0.79026 1.19096 1.17068 1.18563 1.20690 0.91790 1.11965 0.99004 1.20775 0.95722 0.93056 0.94326 1.19625 0.92437 1.27954 0.95189 1.86187 1.07030 1.15592 1.90834 0.78286 0.88610 0.86704 0.85804 0.95633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -20.56 18.18 19.00 0.35 -20.21 15 2 C 0.30 12.72 13.12 88.33 1.16 13.88 15 3 C -0.03 -1.23 5.85 -20.78 -0.12 -1.36 15 4 C -0.22 -6.66 10.65 67.17 0.72 -5.95 15 5 S 0.23 6.98 22.60 -56.49 -1.28 5.71 15 6 C -0.08 -3.36 6.33 23.07 0.15 -3.21 15 7 C -0.18 -7.98 6.19 -18.77 -0.12 -8.09 15 8 C 0.14 6.86 5.71 -19.70 -0.11 6.74 15 9 C -0.44 -22.06 8.31 23.21 0.19 -21.86 15 10 H 0.08 4.04 5.71 -2.91 -0.02 4.03 15 11 C 0.04 1.95 5.17 85.20 0.44 2.39 15 12 N -0.78 -36.30 11.04 21.81 0.24 -36.06 15 13 Si 0.97 36.33 29.58 68.60 2.03 38.36 15 14 H -0.27 -10.06 7.11 99.48 0.71 -9.35 15 15 H -0.25 -8.35 7.11 99.48 0.71 -7.64 15 16 H -0.26 -9.99 7.11 99.48 0.71 -9.29 15 17 C -0.21 -10.01 8.58 22.39 0.19 -9.82 15 18 C -0.02 -0.67 9.62 22.02 0.21 -0.46 15 19 C -0.23 -9.43 6.17 23.12 0.14 -9.29 15 20 S -0.15 -5.12 25.42 -56.49 -1.44 -6.56 15 21 H 0.20 4.49 8.06 -2.91 -0.02 4.46 15 22 H 0.30 12.53 8.30 -92.71 -0.77 11.76 15 23 H 0.12 5.56 6.33 -2.91 -0.02 5.54 15 24 H 0.12 4.66 8.06 -2.91 -0.02 4.63 15 25 H 0.08 2.41 9.55 73.80 0.70 3.11 15 Total: -1.00 -53.26 259.83 4.73 -48.53 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: 1.97 Total: 7.26 kcal Atomic # 6 Polarization: -39.87 SS G_CDS: 2.85 Total: -37.02 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: 0.59 Total: -56.28 kcal Atomic # 14 Polarization: 36.33 SS G_CDS: 2.03 Total: 38.36 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -2.71 Total: -0.85 kcal Total: -53.26 4.73 -48.53 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396214166.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.262 kcal (2) G-P(sol) polarization free energy of solvation -53.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds