Wall clock time and date at job start Mon Mar 30 2020 07:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.35296 * 124.79013 * 288.80800 * 3 2 1 5 5 C 1.39878 * 115.41103 * 180.02562 * 4 3 2 6 6 C 1.42618 * 128.22281 * 180.26175 * 5 4 3 7 7 C 1.34891 * 121.15363 * 180.21476 * 6 5 4 8 8 C 1.41355 * 120.49894 * 359.49564 * 7 6 5 9 9 C 1.40526 * 120.26227 * 180.23285 * 8 7 6 10 10 H 1.07999 * 119.99414 * 205.39551 * 9 8 7 11 11 C 1.39912 * 119.99663 * 25.39062 * 9 8 7 12 12 N 1.30900 * 120.00427 * 17.49844 * 11 9 8 13 13 Si 1.86800 * 119.99510 * 197.48929 * 11 9 8 14 14 H 1.48498 * 109.47425 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.46798 * 120.00791 * 13 11 9 16 16 H 1.48498 * 109.47176 * 240.00502 * 13 11 9 17 17 C 1.41250 * 119.47235 * 0.25641 * 8 7 6 18 18 S 1.76202 * 120.10286 * 180.02562 * 17 8 7 19 19 C 1.39966 * 112.71882 * 359.97438 * 5 4 3 20 20 S 1.75481 * 124.78423 * 108.84509 * 3 2 1 21 21 H 1.08004 * 122.29556 * 0.02562 * 4 3 2 22 22 H 1.08002 * 119.42540 * 359.97048 * 6 5 4 23 23 H 1.07996 * 119.75254 * 179.77250 * 7 6 5 24 24 H 0.96997 * 120.00257 * 179.97438 * 12 11 9 25 25 H 1.41008 * 100.00163 * 89.99696 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3401 -0.3572 1.0518 5 6 4.7202 -0.2826 0.8362 6 6 5.7735 -0.5969 1.7449 7 6 7.0672 -0.4678 1.3852 8 6 7.4102 -0.0252 0.0872 9 6 8.7595 0.1028 -0.2838 10 1 9.0415 0.7930 -1.0651 11 6 9.7375 -0.6640 0.3590 12 7 9.3922 -1.7246 1.0440 13 14 11.5361 -0.1740 0.2396 14 1 11.6609 1.0540 -0.5860 15 1 12.0690 0.0886 1.6006 16 1 12.3083 -1.2750 -0.3903 17 6 6.3858 0.2878 -0.8336 18 16 6.7946 0.8403 -2.4561 19 6 5.0429 0.1565 -0.4530 20 16 3.5689 0.4666 -1.3640 21 1 2.9197 -0.6785 1.9934 22 1 5.5312 -0.9405 2.7397 23 1 7.8467 -0.7087 2.0927 24 1 10.0702 -2.2564 1.4893 25 1 6.8521 -0.3975 -3.1291 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396214465.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:29:47 Heat of formation + Delta-G solvation = 55.813428 kcal Electronic energy + Delta-G solvation = -13848.158513 eV Core-core repulsion = 11429.649073 eV Total energy + Delta-G solvation = -2418.509439 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.50190 -36.39339 -35.21957 -33.14930 -30.16286 -29.36464 -26.16310 -23.16695 -22.13458 -20.44008 -18.64361 -17.43392 -16.53863 -15.89120 -15.27177 -14.68053 -14.37057 -13.71124 -13.64640 -13.12004 -12.92037 -12.61263 -12.42864 -12.14151 -11.84821 -11.54523 -11.37215 -11.09576 -10.88477 -10.51705 -10.28562 -10.05465 -9.60173 -9.47324 -8.67085 -7.72427 -7.52555 -7.11634 -7.00800 -4.97916 1.17357 1.99051 2.12916 2.54362 2.62871 2.77244 2.85001 2.91148 3.03506 3.47366 3.49109 3.66386 3.79235 4.11978 4.55956 5.05903 5.77193 5.88278 6.11162 6.36019 6.42270 6.50237 6.68210 6.82586 7.15271 7.30476 7.44378 7.55655 7.94675 7.96068 8.15960 8.25940 9.41472 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.035848 B = 0.006121 C = 0.005311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.893211 B = 4573.402277 C = 5270.369899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C 0.305 3.695 3 C -0.240 4.240 4 C 0.009 3.991 5 C -0.212 4.212 6 C -0.056 4.056 7 C -0.131 4.131 8 C 0.156 3.844 9 C -0.386 4.386 10 H 0.113 0.887 11 C 0.066 3.934 12 N -0.750 5.750 13 Si 0.923 3.077 14 H -0.249 1.249 15 H -0.265 1.265 16 H -0.268 1.268 17 C -0.227 4.227 18 S -0.162 6.162 19 C -0.003 4.003 20 S 0.111 5.889 21 H 0.130 0.870 22 H 0.104 0.896 23 H 0.130 0.870 24 H 0.295 0.705 25 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.633 0.812 0.695 2.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.140 5.140 2 C -0.008 4.008 3 C -0.358 4.358 4 C -0.026 4.026 5 C -0.219 4.219 6 C -0.076 4.076 7 C -0.152 4.152 8 C 0.147 3.853 9 C -0.412 4.412 10 H 0.131 0.869 11 C -0.159 4.159 12 N -0.371 5.371 13 Si 0.745 3.255 14 H -0.172 1.172 15 H -0.189 1.189 16 H -0.193 1.193 17 C -0.350 4.350 18 S -0.004 6.004 19 C -0.123 4.123 20 S 0.374 5.626 21 H 0.148 0.852 22 H 0.122 0.878 23 H 0.147 0.853 24 H 0.107 0.893 25 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges 0.762 1.609 -1.424 2.280 hybrid contribution 1.279 -1.743 2.036 2.970 sum 2.040 -0.134 0.612 2.135 Atomic orbital electron populations 1.81176 1.11545 1.12711 1.08524 1.24551 0.91186 0.92010 0.93018 1.19135 0.88065 1.26544 1.02079 1.20168 0.91878 0.93729 0.96775 1.17543 0.92124 1.16692 0.95563 1.20469 0.91990 0.98216 0.96973 1.21012 0.95186 1.02348 0.96616 1.17698 0.92079 0.85525 0.90031 1.20325 0.90617 1.15956 1.14348 0.86886 1.26388 1.03816 0.93346 0.92366 1.69834 1.38190 1.09378 1.19678 0.85965 0.78922 0.80680 0.79947 1.17181 1.18934 1.19263 1.19937 0.91168 1.28132 0.95731 1.86029 1.93871 1.14000 1.06487 1.22718 0.95664 0.98001 0.95953 1.83891 0.94186 1.71344 1.13165 0.85191 0.87778 0.85264 0.89343 0.96970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -8.80 18.54 41.84 0.78 -8.03 15 2 C 0.31 5.57 15.77 -22.47 -0.35 5.22 15 3 C -0.24 -4.36 6.23 -38.70 -0.24 -4.60 15 4 C 0.01 0.17 10.06 -40.02 -0.40 -0.23 15 5 C -0.21 -4.23 5.87 -106.95 -0.63 -4.86 15 6 C -0.06 -1.09 9.98 -39.08 -0.39 -1.48 15 7 C -0.13 -2.78 8.56 -39.58 -0.34 -3.12 15 8 C 0.16 3.50 5.57 -106.71 -0.59 2.91 15 9 C -0.39 -8.35 8.43 -38.09 -0.32 -8.67 15 10 H 0.11 2.40 6.99 -52.49 -0.37 2.04 15 11 C 0.07 1.32 5.13 -17.32 -0.09 1.23 15 12 N -0.75 -15.40 10.98 55.55 0.61 -14.79 15 13 Si 0.92 15.00 29.59 -169.99 -5.03 9.97 15 14 H -0.25 -4.07 7.11 56.52 0.40 -3.67 15 15 H -0.26 -4.23 7.11 56.52 0.40 -3.83 15 16 H -0.27 -4.35 7.11 56.52 0.40 -3.95 15 17 C -0.23 -5.00 6.22 -37.70 -0.23 -5.23 15 18 S -0.16 -3.24 23.96 -107.50 -2.58 -5.81 15 19 C 0.00 -0.07 6.34 -38.20 -0.24 -0.31 15 20 S 0.11 2.07 22.86 -107.50 -2.46 -0.39 15 21 H 0.13 1.95 8.06 -52.48 -0.42 1.52 15 22 H 0.10 1.73 8.06 -52.49 -0.42 1.30 15 23 H 0.13 2.71 6.18 -52.49 -0.32 2.39 15 24 H 0.30 5.36 8.30 -40.82 -0.34 5.03 15 25 H 0.07 1.28 9.55 96.90 0.93 2.21 15 LS Contribution 262.55 15.07 3.96 3.96 Total: -1.00 -22.89 262.55 -8.30 -31.20 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: 0.25 Total: 3.04 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: -3.84 Total: -19.15 kcal Atomic # 7 Polarization: -24.20 SS G_CDS: 1.39 Total: -22.82 kcal Atomic # 14 Polarization: 15.00 SS G_CDS: -5.03 Total: 9.97 kcal Atomic # 16 Polarization: -1.17 SS G_CDS: -5.03 Total: -6.20 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -22.89 -8.30 -31.20 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396214465.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.011 kcal (2) G-P(sol) polarization free energy of solvation -22.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds