Wall clock time and date at job start Mon Mar 30 2020 07:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.40761 * 120.44616 * 170.18334 * 3 2 1 5 5 S 1.75924 * 130.11751 * 0.02562 * 4 3 2 6 6 C 1.75267 * 92.24501 * 180.02562 * 5 4 3 7 7 C 1.33290 * 111.24400 * 0.02562 * 6 5 4 8 8 S 1.76193 * 122.61532 * 179.97438 * 7 6 5 9 9 C 1.39991 * 119.90611 * 180.02562 * 4 3 2 10 10 C 1.41920 * 119.73492 * 0.02562 * 9 4 3 11 11 C 1.35021 * 121.94795 * 359.97438 * 10 9 4 12 12 C 1.41279 * 120.48679 * 359.71701 * 11 10 9 13 13 C 1.40282 * 120.58502 * 180.30556 * 12 11 10 14 14 H 1.08003 * 119.99431 * 204.90782 * 13 12 11 15 15 C 1.40104 * 120.00448 * 24.90895 * 13 12 11 16 16 N 1.30739 * 119.99965 * 17.40856 * 15 13 12 17 17 Si 1.86801 * 119.99628 * 197.41314 * 15 13 12 18 18 H 1.48499 * 109.47436 * 90.00256 * 17 15 13 19 19 H 1.48502 * 109.46755 * 209.99862 * 17 15 13 20 20 H 1.48498 * 109.47478 * 329.99610 * 17 15 13 21 21 H 1.07997 * 124.37594 * 179.97438 * 6 5 4 22 22 H 1.34495 * 103.00196 * 270.01928 * 8 7 6 23 23 H 1.07999 * 119.02556 * 180.02562 * 10 9 4 24 24 H 1.08000 * 119.75580 * 180.02562 * 11 10 9 25 25 H 0.97007 * 120.00078 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2808 1.1967 -0.2069 5 16 2.6946 2.8312 -0.4892 6 6 4.3230 3.4698 -0.6008 7 6 5.2312 2.5082 -0.4357 8 16 6.9645 2.8194 -0.4917 9 6 4.6806 1.1842 -0.2052 10 6 5.3734 -0.0364 0.0050 11 6 4.7223 -1.2020 0.2065 12 6 3.3101 -1.2410 0.2204 13 6 2.6315 -2.4497 0.4360 14 1 1.6259 -2.5782 0.0635 15 6 3.2582 -3.4901 1.1344 16 7 4.3098 -3.2426 1.8708 17 14 2.5913 -5.2307 1.0133 18 1 3.2434 -5.9329 -0.1212 19 1 2.8764 -5.9589 2.2757 20 1 1.1241 -5.1843 0.7892 21 1 4.5599 4.5080 -0.7809 22 1 7.2605 2.6500 -1.7927 23 1 6.4534 -0.0328 0.0044 24 1 5.2852 -2.1102 0.3633 25 1 4.7439 -3.9630 2.3541 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396214628.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:19 Heat of formation + Delta-G solvation = 45.866438 kcal Electronic energy + Delta-G solvation = -14000.910668 eV Core-core repulsion = 11581.969895 eV Total energy + Delta-G solvation = -2418.940773 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = -0.81 seconds Orbital eigenvalues (eV) -39.88002 -37.31884 -36.71129 -34.67426 -31.84687 -30.90347 -27.39836 -24.83572 -23.72899 -21.86968 -20.20820 -19.23082 -18.00860 -17.36828 -17.31738 -16.27368 -15.64384 -15.41471 -15.08719 -14.83603 -14.13810 -13.90210 -13.77107 -13.59340 -13.38905 -13.15827 -12.80653 -12.57187 -12.51726 -11.92179 -11.81554 -11.56656 -11.37933 -11.09676 -10.21347 -9.38459 -9.06181 -9.02475 -8.60077 -6.67367 -0.03478 0.32502 0.39387 0.78266 0.99798 1.36136 1.41747 1.50165 1.58542 1.99112 2.08434 2.10209 2.40443 2.53763 3.44859 3.57985 3.96910 4.42226 4.66859 4.77352 4.84567 4.90121 5.01710 5.20015 5.53810 5.66159 5.82164 5.89626 6.25606 6.44637 6.59453 6.91519 7.90446 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.023821 B = 0.007100 C = 0.005560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.156805 B = 3942.461871 C = 5035.096966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C 0.300 3.700 3 C -0.213 4.213 4 C -0.046 4.046 5 S 0.068 5.932 6 C -0.178 4.178 7 C -0.082 4.082 8 S -0.093 6.093 9 C -0.187 4.187 10 C -0.043 4.043 11 C -0.148 4.148 12 C 0.145 3.855 13 C -0.426 4.426 14 H 0.079 0.921 15 C 0.044 3.956 16 N -0.762 5.762 17 Si 0.985 3.015 18 H -0.248 1.248 19 H -0.255 1.255 20 H -0.268 1.268 21 H 0.199 0.801 22 H 0.079 0.921 23 H 0.132 0.868 24 H 0.134 0.866 25 H 0.310 0.690 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.927 3.270 -2.427 8.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.206 5.206 2 C -0.008 4.008 3 C -0.226 4.226 4 C -0.165 4.165 5 S 0.329 5.671 6 C -0.314 4.314 7 C -0.207 4.207 8 S 0.061 5.939 9 C -0.196 4.196 10 C -0.063 4.063 11 C -0.168 4.168 12 C 0.137 3.863 13 C -0.452 4.452 14 H 0.097 0.903 15 C -0.180 4.180 16 N -0.383 5.383 17 Si 0.805 3.195 18 H -0.172 1.172 19 H -0.179 1.179 20 H -0.193 1.193 21 H 0.216 0.784 22 H 0.043 0.957 23 H 0.150 0.850 24 H 0.151 0.849 25 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.886 4.118 -2.169 6.748 hybrid contribution 0.401 -1.615 -0.759 1.829 sum 5.287 2.504 -2.928 6.542 Atomic orbital electron populations 1.80985 1.12816 1.09988 1.16819 1.25804 0.92732 0.91381 0.90907 1.16088 0.82749 0.92765 1.31030 1.22290 0.96441 0.95463 1.02261 1.83915 1.07947 0.99026 1.76210 1.25728 0.93728 1.03688 1.08299 1.20946 0.96542 0.93746 1.09455 1.85493 1.02235 1.91962 1.14201 1.18777 0.90449 0.93965 1.16415 1.20593 0.99608 0.90152 0.95984 1.20914 0.93212 0.98276 1.04366 1.18644 0.92439 0.89471 0.85727 1.19991 1.01435 0.97034 1.26701 0.90321 1.26889 0.94077 1.05367 0.91669 1.69714 1.15263 1.37867 1.15447 0.85113 0.79517 0.74761 0.80158 1.17156 1.17852 1.19275 0.78440 0.95670 0.85031 0.84864 0.87753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -26.23 18.54 19.01 0.35 -25.88 15 2 C 0.30 14.74 14.01 88.33 1.24 15.98 15 3 C -0.21 -10.19 5.98 -19.31 -0.12 -10.31 15 4 C -0.05 -1.98 6.33 23.31 0.15 -1.83 15 5 S 0.07 2.43 22.92 -56.49 -1.29 1.14 15 6 C -0.18 -5.45 10.88 66.70 0.73 -4.72 15 7 C -0.08 -2.79 6.21 22.95 0.14 -2.65 15 8 S -0.09 -2.57 25.59 -56.49 -1.45 -4.02 15 9 C -0.19 -7.57 6.03 -20.14 -0.12 -7.69 15 10 C -0.04 -1.71 9.69 22.44 0.22 -1.49 15 11 C -0.15 -6.50 8.58 22.28 0.19 -6.31 15 12 C 0.15 6.97 5.72 -19.93 -0.11 6.85 15 13 C -0.43 -20.16 8.54 23.22 0.20 -19.96 15 14 H 0.08 3.84 7.36 -2.91 -0.02 3.82 15 15 C 0.04 1.85 5.15 85.31 0.44 2.29 15 16 N -0.76 -31.97 10.96 21.85 0.24 -31.73 15 17 Si 0.99 32.10 29.59 68.60 2.03 34.13 15 18 H -0.25 -7.61 7.11 99.48 0.71 -6.91 15 19 H -0.25 -7.67 7.11 99.48 0.71 -6.96 15 20 H -0.27 -9.27 7.11 99.48 0.71 -8.57 15 21 H 0.20 4.54 8.06 -2.91 -0.02 4.51 15 22 H 0.08 1.96 9.07 73.35 0.67 2.63 15 23 H 0.13 4.56 7.87 -2.91 -0.02 4.54 15 24 H 0.13 5.73 6.18 -2.91 -0.02 5.71 15 25 H 0.31 11.27 8.29 -92.70 -0.77 10.50 15 Total: -1.00 -51.70 262.87 4.76 -46.94 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: 1.93 Total: 9.28 kcal Atomic # 6 Polarization: -32.80 SS G_CDS: 2.95 Total: -29.85 kcal Atomic # 7 Polarization: -58.20 SS G_CDS: 0.59 Total: -57.61 kcal Atomic # 14 Polarization: 32.10 SS G_CDS: 2.03 Total: 34.13 kcal Atomic # 16 Polarization: -0.14 SS G_CDS: -2.74 Total: -2.88 kcal Total: -51.70 4.76 -46.94 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396214628.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.808 kcal (2) G-P(sol) polarization free energy of solvation -51.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.81 seconds