Wall clock time and date at job start Mon Mar 30 2020 07:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.40975 * 120.09201 * 167.98790 * 3 2 1 5 5 S 1.75977 * 130.22829 * 0.02562 * 4 3 2 6 6 C 1.75467 * 91.75345 * 179.97438 * 5 4 3 7 7 C 1.39861 * 124.84377 * 180.02562 * 6 5 4 8 8 H 1.07997 * 119.99704 * 193.78520 * 7 6 5 9 9 C 1.40062 * 120.00118 * 13.78891 * 7 6 5 10 10 N 1.30846 * 119.99907 * 200.11425 * 9 7 6 11 11 Si 1.86804 * 120.00236 * 20.11042 * 9 7 6 12 12 H 1.48496 * 109.47289 * 270.00352 * 11 9 7 13 13 H 1.48504 * 109.46943 * 30.00328 * 11 9 7 14 14 H 1.48499 * 109.46842 * 149.99939 * 11 9 7 15 15 C 1.36989 * 110.30734 * 0.26183 * 6 5 4 16 16 C 1.39678 * 115.07749 * 359.52860 * 15 6 5 17 17 C 1.42193 * 128.32839 * 180.16898 * 16 15 6 18 18 C 1.35641 * 121.02277 * 180.28713 * 17 16 15 19 19 C 1.39635 * 120.77617 * 0.04379 * 18 17 16 20 20 S 1.76198 * 120.09708 * 180.02562 * 19 18 17 21 21 H 0.96998 * 119.99940 * 354.71644 * 10 9 7 22 22 H 1.08001 * 122.45833 * 179.73571 * 15 6 5 23 23 H 1.08007 * 119.48617 * 0.30842 * 17 16 15 24 24 H 1.08004 * 119.60986 * 180.02562 * 18 17 16 25 25 H 1.41002 * 100.00312 * 269.97697 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2743 1.1940 -0.2539 5 16 2.6810 2.8146 -0.5981 6 6 4.3140 3.4425 -0.7313 7 6 4.6378 4.7735 -1.0134 8 1 5.6465 5.0355 -1.2968 9 6 3.6539 5.7668 -0.9283 10 7 3.8200 6.9069 -1.5485 11 14 2.1046 5.4638 0.0703 12 1 1.0652 4.8577 -0.8001 13 1 2.4113 4.5399 1.1918 14 1 1.6057 6.7528 0.6132 15 6 5.2265 2.4418 -0.5246 16 6 4.6772 1.1868 -0.2522 17 6 5.3561 -0.0354 0.0070 18 6 4.6684 -1.1790 0.2503 19 6 3.2721 -1.1866 0.2518 20 16 2.3969 -2.6822 0.5706 21 1 4.6561 7.0944 -2.0031 22 1 6.2922 2.6116 -0.5659 23 1 6.4360 -0.0534 0.0106 24 1 5.2073 -2.0946 0.4449 25 1 2.2749 -3.1795 -0.7431 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396215773.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:29:08 Heat of formation + Delta-G solvation = 37.290076 kcal Electronic energy + Delta-G solvation = -13949.757196 eV Core-core repulsion = 11530.444524 eV Total energy + Delta-G solvation = -2419.312672 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.32355 -37.83813 -36.83592 -35.15988 -32.30517 -31.37591 -27.29525 -25.03849 -23.93290 -21.39584 -20.93140 -19.80134 -18.49379 -17.48421 -16.96371 -16.51059 -15.91242 -15.62529 -15.30805 -14.87359 -14.53781 -14.21614 -14.05456 -13.94927 -13.74399 -13.21825 -12.99160 -12.57266 -12.47859 -12.16411 -11.95381 -11.58905 -11.30828 -10.92459 -10.44345 -9.83592 -9.47885 -9.15903 -8.65289 -6.76032 -0.55800 0.12834 0.46844 0.77581 0.99882 1.12659 1.32279 1.51769 1.56293 1.70793 1.74812 1.98859 2.05991 2.65419 2.81869 3.01677 4.03812 4.32111 4.44266 4.58718 4.74121 5.06129 5.11135 5.21648 5.26405 5.37704 5.64029 5.77555 5.90591 6.10331 6.27803 6.30812 7.56617 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.031824 B = 0.007160 C = 0.005978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.637113 B = 3909.472343 C = 4682.380240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C 0.269 3.731 3 C 0.061 3.939 4 C -0.204 4.204 5 S -0.031 6.031 6 C 0.050 3.950 7 C -0.444 4.444 8 H 0.094 0.906 9 C 0.028 3.972 10 N -0.778 5.778 11 Si 0.981 3.019 12 H -0.232 1.232 13 H -0.221 1.221 14 H -0.218 1.218 15 C -0.365 4.365 16 C 0.034 3.966 17 C -0.120 4.120 18 C -0.048 4.048 19 C -0.129 4.129 20 S -0.149 6.149 21 H 0.298 0.702 22 H 0.129 0.871 23 H 0.153 0.847 24 H 0.170 0.830 25 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.595 -9.290 2.599 9.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.112 5.112 2 C -0.046 4.046 3 C 0.050 3.950 4 C -0.321 4.321 5 S 0.226 5.774 6 C -0.068 4.068 7 C -0.477 4.477 8 H 0.112 0.888 9 C -0.197 4.197 10 N -0.398 5.398 11 Si 0.798 3.202 12 H -0.158 1.158 13 H -0.144 1.144 14 H -0.141 1.141 15 C -0.388 4.388 16 C 0.026 3.974 17 C -0.142 4.142 18 C -0.070 4.070 19 C -0.245 4.245 20 S 0.008 5.992 21 H 0.111 0.889 22 H 0.146 0.854 23 H 0.171 0.829 24 H 0.187 0.813 25 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.363 -8.622 3.210 9.498 hybrid contribution 3.789 -0.031 -1.781 4.187 sum 1.426 -8.652 1.428 8.884 Atomic orbital electron populations 1.81081 1.12267 1.08686 1.09137 1.25785 0.92906 0.92522 0.93404 1.15738 0.82977 0.92931 1.03382 1.22550 0.97151 0.95542 1.16847 1.84327 1.10987 1.02333 1.79705 1.21450 0.92414 0.97504 0.95447 1.20437 0.99846 0.91243 1.36217 0.88824 1.28116 1.05133 0.92094 0.94356 1.70559 1.27034 1.24137 1.18081 0.84216 0.73695 0.82069 0.80192 1.15774 1.14402 1.14143 1.19831 0.98966 0.91734 1.28314 1.18336 0.90235 0.94844 0.93937 1.21067 1.00875 0.89777 1.02444 1.21017 0.90826 0.99379 0.95776 1.20897 0.96278 0.92962 1.14401 1.86785 1.75087 1.21748 1.15588 0.88942 0.85354 0.82931 0.81273 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -17.30 18.54 19.00 0.35 -16.95 15 2 C 0.27 10.34 13.99 88.33 1.24 11.57 15 3 C 0.06 2.26 5.79 -20.86 -0.12 2.14 15 4 C -0.20 -8.33 6.34 23.44 0.15 -8.19 15 5 S -0.03 -1.37 16.63 -56.49 -0.94 -2.31 15 6 C 0.05 2.28 5.70 22.37 0.13 2.41 15 7 C -0.44 -20.98 9.60 23.11 0.22 -20.76 15 8 H 0.09 4.46 8.06 -2.91 -0.02 4.44 15 9 C 0.03 1.27 5.50 85.28 0.47 1.74 15 10 N -0.78 -36.21 13.66 21.85 0.30 -35.91 15 11 Si 0.98 39.42 24.75 68.60 1.70 41.12 15 12 H -0.23 -9.26 6.84 99.48 0.68 -8.58 15 13 H -0.22 -8.80 6.55 99.48 0.65 -8.15 15 14 H -0.22 -7.99 7.11 99.48 0.71 -7.28 15 15 C -0.36 -15.49 10.13 22.32 0.23 -15.26 15 16 C 0.03 1.32 5.85 -21.45 -0.13 1.19 15 17 C -0.12 -3.53 10.00 22.65 0.23 -3.31 15 18 C -0.05 -1.26 9.68 22.01 0.21 -1.04 15 19 C -0.13 -3.97 6.17 23.11 0.14 -3.83 15 20 S -0.15 -3.99 24.77 -56.49 -1.40 -5.39 15 21 H 0.30 13.28 8.73 -92.71 -0.81 12.47 15 22 H 0.13 5.12 8.06 -2.91 -0.02 5.09 15 23 H 0.15 3.56 8.06 -2.91 -0.02 3.53 15 24 H 0.17 3.13 8.06 -2.91 -0.02 3.10 15 25 H 0.11 2.54 9.55 73.80 0.70 3.25 15 Total: -1.00 -49.52 258.11 4.61 -44.90 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: 1.84 Total: 7.88 kcal Atomic # 6 Polarization: -36.10 SS G_CDS: 2.76 Total: -33.33 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: 0.65 Total: -52.87 kcal Atomic # 14 Polarization: 39.42 SS G_CDS: 1.70 Total: 41.12 kcal Atomic # 16 Polarization: -5.36 SS G_CDS: -2.34 Total: -7.70 kcal Total: -49.52 4.61 -44.90 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396215773.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.191 kcal (2) G-P(sol) polarization free energy of solvation -49.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds