Wall clock time and date at job start Mon Mar 30 2020 07:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13590 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39277 * 119.81286 * 130.75092 * 3 2 1 5 5 C 1.41001 * 120.79055 * 180.27530 * 4 3 2 6 6 C 1.45487 * 128.93708 * 180.02562 * 5 4 3 7 7 C 1.32787 * 114.71485 * 180.02562 * 6 5 4 8 8 S 1.76199 * 124.35734 * 180.02562 * 7 6 5 9 9 S 1.75276 * 111.28732 * 359.97438 * 7 6 5 10 10 C 1.39651 * 119.18266 * 0.02562 * 5 4 3 11 11 C 1.42193 * 119.89324 * 359.97438 * 10 5 4 12 12 C 1.41047 * 119.98889 * 180.02562 * 11 10 5 13 13 H 1.07993 * 119.99763 * 25.08139 * 12 11 10 14 14 C 1.39879 * 119.99842 * 205.07826 * 12 11 10 15 15 N 1.30892 * 120.00215 * 17.94736 * 14 12 11 16 16 Si 1.86800 * 119.99900 * 197.94951 * 14 12 11 17 17 H 1.48506 * 109.47085 * 94.68498 * 16 14 12 18 18 H 1.48505 * 109.47244 * 214.68455 * 16 14 12 19 19 H 1.48495 * 109.46982 * 334.68690 * 16 14 12 20 20 C 1.39322 * 119.81434 * 311.03203 * 3 2 1 21 21 H 1.07998 * 119.60835 * 0.25556 * 4 3 2 22 22 H 1.07998 * 122.64304 * 359.97438 * 6 5 4 23 23 H 1.34500 * 102.99965 * 179.97438 * 8 7 6 24 24 H 0.97002 * 120.00027 * 180.02562 * 15 14 12 25 25 H 1.08007 * 120.12994 * 359.69659 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2600 0.7898 -0.9155 5 6 4.6698 0.8017 -0.9375 6 6 5.5644 1.5505 -1.8068 7 6 6.8570 1.3474 -1.5808 8 16 8.1578 2.1223 -2.4818 9 16 7.1027 0.2102 -0.2698 10 6 5.3718 0.0090 -0.0269 11 6 4.6623 -0.7955 0.9065 12 6 5.3693 -1.5965 1.8274 13 1 6.3744 -1.3276 2.1166 14 6 4.7684 -2.7391 2.3660 15 7 3.7226 -3.2660 1.7813 16 14 5.4585 -3.5128 3.9199 17 1 4.7224 -2.9933 5.1005 18 1 5.3031 -4.9880 3.8495 19 1 6.8984 -3.1721 4.0452 20 6 3.2610 -0.7926 0.9119 21 1 2.7103 1.3996 -1.6171 22 1 5.2054 2.2183 -2.5759 23 1 9.2651 1.6189 -1.9078 24 1 3.3058 -4.0581 2.1551 25 1 2.7203 -1.4028 1.6203 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396216425.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:30:00 Heat of formation + Delta-G solvation = 47.814081 kcal Electronic energy + Delta-G solvation = -13883.251628 eV Core-core repulsion = 11464.395311 eV Total energy + Delta-G solvation = -2418.856317 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.05902 -37.61019 -36.58375 -34.84397 -32.14886 -30.13739 -27.47194 -24.87979 -23.88299 -22.37664 -19.66592 -19.08913 -18.29816 -17.48419 -16.80982 -16.65820 -15.96475 -15.00891 -14.96370 -14.79002 -14.37525 -14.21608 -13.74417 -13.65575 -13.44450 -13.11328 -12.85050 -12.60353 -12.19905 -12.15922 -11.88375 -11.61171 -11.36562 -11.15097 -10.32088 -9.84815 -8.86770 -8.66157 -8.39994 -6.43782 -0.02407 0.18969 0.33361 0.57147 1.24329 1.30609 1.39842 1.51741 1.65034 1.70943 1.73944 2.08863 2.16079 2.73855 3.11798 3.48348 4.26445 4.39982 4.65439 4.70831 4.93829 5.09989 5.16068 5.27615 5.55810 5.71407 5.78783 6.00723 6.31955 6.56034 6.69690 6.71284 8.17344 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.016010 B = 0.008200 C = 0.005511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.522285 B = 3413.991303 C = 5079.419450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C 0.293 3.707 3 C -0.007 4.007 4 C -0.150 4.150 5 C -0.045 4.045 6 C -0.082 4.082 7 C -0.186 4.186 8 S -0.020 6.020 9 S 0.059 5.941 10 C -0.208 4.208 11 C 0.120 3.880 12 C -0.474 4.474 13 H 0.082 0.918 14 C 0.043 3.957 15 N -0.807 5.807 16 Si 0.976 3.024 17 H -0.261 1.261 18 H -0.268 1.268 19 H -0.257 1.257 20 C -0.139 4.139 21 H 0.139 0.861 22 H 0.172 0.828 23 H 0.084 0.916 24 H 0.295 0.705 25 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.540 5.227 -3.356 9.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.153 5.153 2 C -0.021 4.021 3 C -0.012 4.012 4 C -0.175 4.175 5 C -0.054 4.054 6 C -0.120 4.120 7 C -0.413 4.413 8 S 0.143 5.857 9 S 0.318 5.682 10 C -0.325 4.325 11 C 0.114 3.886 12 C -0.503 4.503 13 H 0.100 0.900 14 C -0.175 4.175 15 N -0.431 5.431 16 Si 0.797 3.203 17 H -0.185 1.185 18 H -0.192 1.192 19 H -0.181 1.181 20 C -0.166 4.166 21 H 0.157 0.843 22 H 0.189 0.811 23 H 0.047 0.953 24 H 0.106 0.894 25 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 7.579 5.003 -3.355 9.681 hybrid contribution -0.660 -1.090 1.203 1.753 sum 6.918 3.913 -2.152 8.234 Atomic orbital electron populations 1.81081 1.12733 1.10953 1.10528 1.26037 0.92865 0.91529 0.91648 1.15723 0.82984 1.01860 1.00630 1.20341 0.91081 1.03942 1.02140 1.18931 0.93548 0.97269 0.95648 1.20839 0.89560 1.01075 1.00547 1.25056 1.01122 1.08560 1.06594 1.85350 0.98053 1.57254 1.45075 1.83703 1.05755 1.45212 1.33488 1.22966 0.95223 1.09914 1.04443 1.17020 0.91368 0.90198 0.90006 1.19719 1.01724 1.07125 1.21713 0.90004 1.26665 0.94318 0.96440 1.00033 1.69837 1.18569 1.18271 1.36456 0.85245 0.79908 0.77722 0.77412 1.18540 1.19216 1.18068 1.21088 0.93454 1.01375 1.00649 0.84339 0.81059 0.95316 0.89437 0.86444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -19.91 18.54 19.00 0.35 -19.55 15 2 C 0.29 11.95 15.29 88.33 1.35 13.30 15 3 C -0.01 -0.29 5.71 -21.52 -0.12 -0.41 15 4 C -0.15 -5.64 9.78 23.20 0.23 -5.41 15 5 C -0.04 -1.72 6.02 -20.39 -0.12 -1.84 15 6 C -0.08 -2.60 10.29 22.96 0.24 -2.36 15 7 C -0.19 -5.85 6.64 66.64 0.44 -5.41 15 8 S -0.02 -0.47 26.13 -56.49 -1.48 -1.95 15 9 S 0.06 2.18 22.76 -56.49 -1.29 0.89 15 10 C -0.21 -9.01 6.36 23.59 0.15 -8.86 15 11 C 0.12 5.74 5.59 -21.15 -0.12 5.62 15 12 C -0.47 -22.75 8.81 23.36 0.21 -22.55 15 13 H 0.08 3.84 7.72 -2.91 -0.02 3.81 15 14 C 0.04 1.97 5.12 85.23 0.44 2.41 15 15 N -0.81 -38.29 10.98 21.82 0.24 -38.05 15 16 Si 0.98 34.85 29.60 68.60 2.03 36.88 15 17 H -0.26 -9.10 7.11 99.48 0.71 -8.39 15 18 H -0.27 -9.19 7.11 99.48 0.71 -8.48 15 19 H -0.26 -9.00 7.11 99.48 0.71 -8.29 15 20 C -0.14 -6.53 8.36 22.99 0.19 -6.34 15 21 H 0.14 4.29 8.06 -2.91 -0.02 4.27 15 22 H 0.17 4.26 8.06 -2.91 -0.02 4.23 15 23 H 0.08 1.84 9.07 73.35 0.67 2.50 15 24 H 0.29 12.68 8.30 -92.71 -0.77 11.91 15 25 H 0.12 5.82 6.17 -2.91 -0.02 5.80 15 Total: -1.00 -50.93 264.68 4.67 -46.26 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: 1.93 Total: 7.37 kcal Atomic # 6 Polarization: -34.73 SS G_CDS: 2.88 Total: -31.85 kcal Atomic # 7 Polarization: -58.19 SS G_CDS: 0.59 Total: -57.60 kcal Atomic # 14 Polarization: 34.85 SS G_CDS: 2.03 Total: 36.88 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -2.76 Total: -1.05 kcal Total: -50.93 4.67 -46.26 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396216425.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.078 kcal (2) G-P(sol) polarization free energy of solvation -50.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds