Wall clock time and date at job start Mon Mar 30 2020 07:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.40145 * 120.12033 * 176.40154 * 3 2 1 5 5 C 1.36069 * 120.27061 * 179.97438 * 4 3 2 6 6 C 1.40321 * 120.97095 * 359.97438 * 5 4 3 7 7 S 1.75861 * 129.98269 * 179.97438 * 6 5 4 8 8 C 1.69965 * 93.24249 * 180.02562 * 7 6 5 9 9 C 1.36511 * 111.93082 * 0.02562 * 8 7 6 10 10 C 1.40814 * 123.30309 * 180.02562 * 9 8 7 11 11 H 1.07995 * 120.00245 * 147.94518 * 10 9 8 12 12 C 1.39675 * 119.99717 * 327.93730 * 10 9 8 13 13 N 1.31089 * 119.99692 * 168.01715 * 12 10 9 14 14 Si 1.86798 * 120.00036 * 348.01822 * 12 10 9 15 15 H 1.48499 * 109.47086 * 89.71413 * 14 12 10 16 16 H 1.48501 * 109.46964 * 209.71840 * 14 12 10 17 17 H 1.48502 * 109.47041 * 329.71767 * 14 12 10 18 18 C 1.39302 * 119.89488 * 0.02562 * 6 5 4 19 19 C 1.39999 * 120.12345 * 356.12656 * 3 2 1 20 20 S 1.76201 * 120.07859 * 0.02562 * 19 3 2 21 21 H 1.07996 * 119.85986 * 359.95495 * 4 3 2 22 22 H 1.07996 * 119.51372 * 179.97438 * 5 4 3 23 23 H 1.08001 * 124.03632 * 180.02562 * 8 7 6 24 24 H 0.97003 * 119.99613 * 180.02562 * 13 12 10 25 25 H 1.40999 * 99.99896 * 90.00067 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2707 1.2108 -0.0761 5 6 4.6314 1.2150 -0.0758 6 6 5.3572 0.0165 0.0007 7 16 7.0949 -0.2531 0.0180 8 6 6.9292 -1.9413 0.1249 9 6 5.6193 -2.3245 0.1485 10 6 5.2084 -3.6687 0.2340 11 1 4.2923 -3.9217 0.7469 12 6 5.9856 -4.6746 -0.3447 13 7 5.7389 -5.9327 -0.0710 14 14 7.3764 -4.2273 -1.5087 15 1 8.6294 -4.0402 -0.7339 16 1 7.5643 -5.3187 -2.4980 17 1 7.0412 -2.9672 -2.2194 18 6 4.6827 -1.2000 0.0772 19 6 3.2711 -1.2072 0.0818 20 16 2.3962 -2.7332 0.1844 21 1 2.7300 2.1437 -0.1355 22 1 5.1605 2.1546 -0.1353 23 1 7.7610 -2.6287 0.1689 24 1 6.2789 -6.6313 -0.4727 25 1 2.2752 -3.0387 -1.1868 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396216830.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:37 Heat of formation + Delta-G solvation = 71.934503 kcal Electronic energy + Delta-G solvation = -14210.635779 eV Core-core repulsion = 11792.825402 eV Total energy + Delta-G solvation = -2417.810377 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.17757 -36.43073 -35.04701 -32.82487 -30.97720 -29.23524 -26.26416 -23.60576 -22.74399 -20.50961 -18.25788 -17.70161 -16.71083 -16.28291 -15.55002 -14.85965 -14.48931 -14.00701 -13.69175 -13.37218 -12.95350 -12.73147 -12.64148 -12.16909 -11.97673 -11.76219 -11.32025 -11.07721 -10.91565 -10.48544 -10.19395 -9.96323 -9.70574 -9.33273 -8.89128 -7.89881 -7.43046 -7.08824 -6.75120 -4.50640 0.78452 1.22681 2.12111 2.36257 2.84524 2.95360 3.02975 3.08809 3.12058 3.25157 3.37457 3.49232 3.94650 4.11998 4.19634 4.97123 5.06405 5.34542 5.56107 5.63819 6.06652 6.17318 6.37979 6.45633 6.75984 6.94047 7.24574 7.52075 7.76327 8.28733 8.39229 8.73730 10.02349 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.020943 B = 0.009738 C = 0.006947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.652683 B = 2874.708492 C = 4029.334398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C 0.272 3.728 3 C -0.022 4.022 4 C -0.079 4.079 5 C -0.077 4.077 6 C -0.121 4.121 7 S 0.092 5.908 8 C -0.452 4.452 9 C 0.082 3.918 10 C -0.408 4.408 11 H 0.130 0.870 12 C 0.083 3.917 13 N -0.803 5.803 14 Si 0.909 3.091 15 H -0.271 1.271 16 H -0.295 1.295 17 H -0.246 1.246 18 C -0.031 4.031 19 C -0.007 4.007 20 S -0.129 6.129 21 H 0.134 0.866 22 H 0.130 0.870 23 H 0.144 0.856 24 H 0.286 0.714 25 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.531 9.361 -1.676 9.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.104 5.104 2 C -0.044 4.044 3 C -0.034 4.034 4 C -0.103 4.103 5 C -0.101 4.101 6 C -0.240 4.240 7 S 0.357 5.643 8 C -0.587 4.587 9 C 0.072 3.928 10 C -0.440 4.440 11 H 0.147 0.853 12 C -0.136 4.136 13 N -0.427 5.427 14 Si 0.736 3.264 15 H -0.197 1.197 16 H -0.222 1.222 17 H -0.169 1.169 18 C -0.044 4.044 19 C -0.124 4.124 20 S 0.030 5.970 21 H 0.152 0.848 22 H 0.148 0.852 23 H 0.161 0.839 24 H 0.096 0.904 25 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.316 9.056 -1.441 9.175 hybrid contribution 0.583 -0.445 -1.453 1.627 sum 0.267 8.610 -2.894 9.088 Atomic orbital electron populations 1.81141 1.11851 1.08085 1.09284 1.25377 0.92354 0.93031 0.93593 1.16102 0.84225 0.93771 1.09281 1.20477 0.93619 0.95909 1.00332 1.20153 0.93064 0.96096 1.00824 1.23098 0.99362 0.96217 1.05278 1.81832 0.99145 1.04431 1.78847 1.23844 0.99954 0.96619 1.38246 1.17452 0.88517 0.92679 0.94107 1.19772 1.08897 0.87530 1.27762 0.85300 1.26140 0.96767 0.94428 0.96293 1.69751 1.36347 1.00726 1.35904 0.86281 0.80888 0.78935 0.80294 1.19722 1.22247 1.16888 1.19666 0.91688 0.93698 0.99315 1.21114 0.93773 0.94114 1.03382 1.86863 1.71228 1.25210 1.13665 0.84814 0.85184 0.83896 0.90401 0.92922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -7.47 18.54 41.84 0.78 -6.69 15 2 C 0.27 4.46 14.25 -22.47 -0.32 4.14 15 3 C -0.02 -0.36 5.76 -106.60 -0.61 -0.98 15 4 C -0.08 -1.05 9.68 -39.65 -0.38 -1.43 15 5 C -0.08 -1.09 9.99 -39.58 -0.40 -1.48 15 6 C -0.12 -2.18 6.45 -38.40 -0.25 -2.43 15 7 S 0.09 1.69 22.96 -107.50 -2.47 -0.78 15 8 C -0.45 -10.07 7.99 30.11 0.24 -9.83 15 9 C 0.08 1.90 5.17 -106.21 -0.55 1.35 15 10 C -0.41 -10.17 8.58 -38.07 -0.33 -10.49 15 11 H 0.13 3.31 5.64 -46.87 -0.26 3.05 15 12 C 0.08 2.06 5.49 -17.33 -0.10 1.97 15 13 N -0.80 -20.44 13.94 55.54 0.77 -19.66 15 14 Si 0.91 20.08 24.62 -169.99 -4.19 15.89 15 15 H -0.27 -5.89 6.62 56.52 0.37 -5.52 15 16 H -0.29 -6.37 7.11 56.52 0.40 -5.97 15 17 H -0.25 -5.52 6.83 56.52 0.39 -5.14 15 18 C -0.03 -0.63 6.01 -105.05 -0.63 -1.26 15 19 C -0.01 -0.13 6.21 -37.81 -0.23 -0.36 15 20 S -0.13 -2.49 21.24 -107.50 -2.28 -4.77 15 21 H 0.13 1.33 8.06 -52.49 -0.42 0.91 15 22 H 0.13 1.41 8.06 -52.49 -0.42 0.98 15 23 H 0.14 3.28 4.90 -52.49 -0.26 3.03 15 24 H 0.29 6.66 8.30 -40.82 -0.34 6.32 15 25 H 0.11 1.94 9.55 96.90 0.93 2.87 15 LS Contribution 251.93 15.07 3.80 3.80 Total: -1.00 -25.75 251.93 -6.77 -32.52 By element: Atomic # 1 Polarization: 0.15 SS G_CDS: 0.38 Total: 0.53 kcal Atomic # 6 Polarization: -17.27 SS G_CDS: -3.56 Total: -20.83 kcal Atomic # 7 Polarization: -27.91 SS G_CDS: 1.55 Total: -26.36 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -4.19 Total: 15.89 kcal Atomic # 16 Polarization: -0.80 SS G_CDS: -4.75 Total: -5.55 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -25.75 -6.77 -32.52 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396216830.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.453 kcal (2) G-P(sol) polarization free energy of solvation -25.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds