Wall clock time and date at job start Mon Mar 30 2020 07:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.40145 * 120.12033 * 176.40154 * 3 2 1 5 5 C 1.36069 * 120.27061 * 179.97438 * 4 3 2 6 6 C 1.40321 * 120.97095 * 359.97438 * 5 4 3 7 7 S 1.75861 * 129.98269 * 179.97438 * 6 5 4 8 8 C 1.69965 * 93.24249 * 180.02562 * 7 6 5 9 9 C 1.36511 * 111.93082 * 0.02562 * 8 7 6 10 10 C 1.40814 * 123.30309 * 180.02562 * 9 8 7 11 11 H 1.07995 * 120.00245 * 147.94518 * 10 9 8 12 12 C 1.39675 * 119.99717 * 327.93730 * 10 9 8 13 13 N 1.31089 * 119.99692 * 168.01715 * 12 10 9 14 14 Si 1.86798 * 120.00036 * 348.01822 * 12 10 9 15 15 H 1.48499 * 109.47086 * 89.71413 * 14 12 10 16 16 H 1.48501 * 109.46964 * 209.71840 * 14 12 10 17 17 H 1.48502 * 109.47041 * 329.71767 * 14 12 10 18 18 C 1.39302 * 119.89488 * 0.02562 * 6 5 4 19 19 C 1.39999 * 120.12345 * 356.12656 * 3 2 1 20 20 S 1.76201 * 120.07859 * 0.02562 * 19 3 2 21 21 H 1.07996 * 119.85986 * 359.95495 * 4 3 2 22 22 H 1.07996 * 119.51372 * 179.97438 * 5 4 3 23 23 H 1.08001 * 124.03632 * 180.02562 * 8 7 6 24 24 H 0.97003 * 119.99613 * 180.02562 * 13 12 10 25 25 H 1.40999 * 99.99896 * 90.00067 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2707 1.2108 -0.0761 5 6 4.6314 1.2150 -0.0758 6 6 5.3572 0.0165 0.0007 7 16 7.0949 -0.2531 0.0180 8 6 6.9292 -1.9413 0.1249 9 6 5.6193 -2.3245 0.1485 10 6 5.2084 -3.6687 0.2340 11 1 4.2923 -3.9217 0.7469 12 6 5.9856 -4.6746 -0.3447 13 7 5.7389 -5.9327 -0.0710 14 14 7.3764 -4.2273 -1.5087 15 1 8.6294 -4.0402 -0.7339 16 1 7.5643 -5.3187 -2.4980 17 1 7.0412 -2.9672 -2.2194 18 6 4.6827 -1.2000 0.0772 19 6 3.2711 -1.2072 0.0818 20 16 2.3962 -2.7332 0.1844 21 1 2.7300 2.1437 -0.1355 22 1 5.1605 2.1546 -0.1353 23 1 7.7610 -2.6287 0.1689 24 1 6.2789 -6.6313 -0.4727 25 1 2.2752 -3.0387 -1.1868 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396216830.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:36 Heat of formation + Delta-G solvation = 57.758080 kcal Electronic energy + Delta-G solvation = -14211.250515 eV Core-core repulsion = 11792.825402 eV Total energy + Delta-G solvation = -2418.425113 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.55918 -37.86676 -36.58716 -34.53034 -32.30798 -30.73329 -27.97458 -25.01154 -24.19328 -22.06494 -19.71127 -19.18730 -18.39707 -17.79770 -17.09198 -16.34320 -15.95930 -15.43961 -15.07499 -14.83918 -14.51629 -14.24727 -14.14409 -13.67081 -13.42148 -13.26323 -12.91707 -12.62197 -12.53880 -12.05354 -11.71935 -11.61813 -11.27780 -11.06983 -10.32636 -9.38773 -9.04770 -8.73101 -8.37657 -6.32028 -0.56402 -0.16902 0.67077 0.94228 1.16438 1.30342 1.41901 1.56356 1.58564 1.64240 1.73787 1.95481 2.14982 2.74399 2.86078 3.19450 3.81878 4.15496 4.23032 4.33716 4.66451 4.83622 5.02203 5.16147 5.18305 5.50961 5.65999 5.79741 6.44170 6.48611 6.57723 6.90067 8.25829 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.020943 B = 0.009738 C = 0.006947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.652683 B = 2874.708492 C = 4029.334398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.284 3.716 3 C -0.011 4.011 4 C -0.054 4.054 5 C -0.057 4.057 6 C -0.129 4.129 7 S 0.139 5.861 8 C -0.460 4.460 9 C 0.067 3.933 10 C -0.439 4.439 11 H 0.109 0.891 12 C 0.050 3.950 13 N -0.849 5.849 14 Si 0.952 3.048 15 H -0.267 1.267 16 H -0.289 1.289 17 H -0.251 1.251 18 C -0.067 4.067 19 C -0.022 4.022 20 S -0.157 6.157 21 H 0.185 0.815 22 H 0.179 0.821 23 H 0.131 0.869 24 H 0.289 0.711 25 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.766 13.449 -2.224 13.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C -0.031 4.031 3 C -0.022 4.022 4 C -0.079 4.079 5 C -0.080 4.080 6 C -0.248 4.248 7 S 0.404 5.596 8 C -0.595 4.595 9 C 0.058 3.942 10 C -0.472 4.472 11 H 0.127 0.873 12 C -0.165 4.165 13 N -0.476 5.476 14 Si 0.778 3.222 15 H -0.194 1.194 16 H -0.217 1.217 17 H -0.175 1.175 18 C -0.079 4.079 19 C -0.139 4.139 20 S 0.002 5.998 21 H 0.202 0.798 22 H 0.196 0.804 23 H 0.149 0.851 24 H 0.099 0.901 25 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.090 13.162 -1.987 13.311 hybrid contribution 0.424 -1.444 -1.234 1.946 sum 0.334 11.718 -3.222 12.157 Atomic orbital electron populations 1.81169 1.12427 1.08679 1.09683 1.25334 0.92236 0.92449 0.93074 1.16260 0.84006 0.93916 1.07985 1.21047 0.93483 0.96392 0.96991 1.20709 0.93267 0.96269 0.97771 1.23425 0.99239 0.96824 1.05274 1.81493 0.99203 1.00117 1.78752 1.24121 0.99460 0.99821 1.36141 1.17684 0.89763 0.93031 0.93766 1.19767 1.08911 0.88874 1.29629 0.87291 1.26652 0.98250 0.94330 0.97218 1.69795 1.38241 1.01411 1.38144 0.85622 0.79167 0.78389 0.79006 1.19354 1.21657 1.17472 1.19575 0.92266 0.93856 1.02239 1.21154 0.93408 0.94224 1.05093 1.86915 1.71206 1.27416 1.14281 0.79796 0.80360 0.85126 0.90080 0.92560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -14.52 18.54 19.00 0.35 -14.17 15 2 C 0.28 8.54 14.25 88.33 1.26 9.80 15 3 C -0.01 -0.32 5.76 -21.14 -0.12 -0.44 15 4 C -0.05 -1.12 9.68 22.23 0.22 -0.91 15 5 C -0.06 -1.25 9.99 22.27 0.22 -1.03 15 6 C -0.13 -4.19 6.45 23.03 0.15 -4.04 15 7 S 0.14 4.70 22.96 -56.49 -1.30 3.40 15 8 C -0.46 -20.30 7.99 67.42 0.54 -19.76 15 9 C 0.07 3.17 5.17 -20.89 -0.11 3.06 15 10 C -0.44 -22.88 8.58 23.25 0.20 -22.68 15 11 H 0.11 5.98 5.64 -6.49 -0.04 5.94 15 12 C 0.05 2.58 5.49 85.15 0.47 3.05 15 13 N -0.85 -45.56 13.94 21.79 0.30 -45.25 15 14 Si 0.95 42.28 24.62 68.60 1.69 43.97 15 15 H -0.27 -11.54 6.62 99.48 0.66 -10.88 15 16 H -0.29 -12.38 7.11 99.48 0.71 -11.67 15 17 H -0.25 -11.18 6.83 99.48 0.68 -10.50 15 18 C -0.07 -2.68 6.01 -20.14 -0.12 -2.80 15 19 C -0.02 -0.81 6.21 23.42 0.15 -0.67 15 20 S -0.16 -6.26 21.24 -56.49 -1.20 -7.46 15 21 H 0.18 2.13 8.06 -2.91 -0.02 2.11 15 22 H 0.18 2.35 8.06 -2.91 -0.02 2.32 15 23 H 0.13 6.01 4.90 -2.91 -0.01 5.99 15 24 H 0.29 14.21 8.30 -92.71 -0.77 13.44 15 25 H 0.11 4.19 9.55 73.80 0.70 4.89 15 Total: -1.00 -58.86 251.93 4.57 -54.28 By element: Atomic # 1 Polarization: -0.24 SS G_CDS: 1.88 Total: 1.64 kcal Atomic # 6 Polarization: -39.26 SS G_CDS: 2.84 Total: -36.41 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: 0.66 Total: -59.42 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 1.69 Total: 43.97 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.50 Total: -4.06 kcal Total: -58.86 4.57 -54.28 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396216830.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.043 kcal (2) G-P(sol) polarization free energy of solvation -58.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds