Wall clock time and date at job start Mon Mar 30 2020 07:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.38409 * 119.99361 * 320.99005 * 3 2 1 5 5 C 1.41594 * 120.36295 * 180.02562 * 4 3 2 6 6 C 1.39779 * 128.23889 * 180.29971 * 5 4 3 7 7 C 1.36940 * 115.07105 * 180.14763 * 6 5 4 8 8 C 1.39831 * 124.78869 * 179.82954 * 7 6 5 9 9 H 1.08001 * 120.00026 * 10.63336 * 8 7 6 10 10 C 1.40067 * 120.00059 * 190.63741 * 8 7 6 11 11 N 1.30837 * 120.00164 * 174.57223 * 10 8 7 12 12 Si 1.86801 * 119.99737 * 354.56636 * 10 8 7 13 13 H 1.48511 * 109.46919 * 180.02562 * 12 10 8 14 14 H 1.48494 * 109.47415 * 300.00252 * 12 10 8 15 15 H 1.48500 * 109.47136 * 60.00934 * 12 10 8 16 16 S 1.75431 * 110.42156 * 359.55772 * 7 6 5 17 17 C 1.40785 * 118.94683 * 359.97438 * 5 4 3 18 18 C 1.39337 * 120.18594 * 0.02562 * 17 5 4 19 19 C 1.38408 * 120.61875 * 359.97438 * 18 17 5 20 20 S 1.76200 * 120.06755 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.82073 * 0.02562 * 4 3 2 22 22 H 1.07991 * 122.46425 * 359.96958 * 6 5 4 23 23 H 0.97000 * 120.00071 * 0.20012 * 11 10 8 24 24 H 1.08001 * 119.69316 * 180.02562 * 18 17 5 25 25 H 1.41006 * 99.99911 * 270.02418 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2603 -0.9305 0.7546 5 6 4.6762 -0.9366 0.7607 6 6 5.5346 -1.7972 1.4509 7 6 6.8699 -1.5575 1.2641 8 6 7.9026 -2.2903 1.8573 9 1 7.6822 -3.2120 2.3753 10 6 9.2228 -1.8290 1.7797 11 7 10.1739 -2.4560 2.4232 12 14 9.6258 -0.3185 0.7572 13 1 11.0822 -0.0397 0.8386 14 1 9.2474 -0.5631 -0.6578 15 1 8.8683 0.8480 1.2775 16 16 7.1021 -0.2062 0.1697 17 6 5.3651 0.0175 -0.0120 18 6 4.6575 0.9501 -0.7677 19 6 3.2735 0.9514 -0.7699 20 16 2.3934 2.1378 -1.7304 21 1 2.7176 -1.6564 1.3419 22 1 5.1716 -2.5908 2.0869 23 1 9.9651 -3.2422 2.9517 24 1 5.1941 1.6783 -1.3579 25 1 2.2707 3.1763 -0.7845 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396216912.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:19 Heat of formation + Delta-G solvation = 34.677796 kcal Electronic energy + Delta-G solvation = -13781.878525 eV Core-core repulsion = 11362.452575 eV Total energy + Delta-G solvation = -2419.425949 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.28626 -37.78708 -36.76593 -35.06105 -32.18041 -31.39724 -27.32353 -25.33475 -23.25813 -21.77327 -20.86836 -19.52636 -18.62177 -17.57085 -16.99728 -16.54464 -15.71583 -15.30437 -15.13131 -15.04416 -14.46848 -14.40121 -14.21773 -13.94358 -13.62203 -13.27823 -13.05274 -12.61699 -12.31955 -11.99361 -11.89409 -11.60217 -11.30430 -10.60557 -10.38883 -9.71986 -9.51255 -9.14101 -8.46961 -6.74377 -0.37607 -0.00265 0.58378 0.80922 1.10824 1.14704 1.40555 1.52746 1.62892 1.77160 1.85325 2.06200 2.14124 2.74458 2.88914 3.04401 3.88515 4.37114 4.44359 4.62288 4.84362 4.94708 5.10604 5.20405 5.23699 5.33858 5.50409 5.79283 5.90592 6.05696 6.35511 6.42799 7.65759 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.038750 B = 0.006003 C = 0.005222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.401428 B = 4663.324337 C = 5360.982729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C 0.285 3.715 3 C 0.021 3.979 4 C -0.095 4.095 5 C 0.029 3.971 6 C -0.368 4.368 7 C 0.046 3.954 8 C -0.444 4.444 9 H 0.080 0.920 10 C 0.021 3.979 11 N -0.794 5.794 12 Si 0.928 3.072 13 H -0.204 1.204 14 H -0.180 1.180 15 H -0.182 1.182 16 S 0.018 5.982 17 C -0.228 4.228 18 C 0.010 3.990 19 C -0.147 4.147 20 S -0.150 6.150 21 H 0.139 0.861 22 H 0.115 0.885 23 H 0.291 0.709 24 H 0.151 0.849 25 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.961 6.463 -4.409 8.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.123 5.123 2 C -0.030 4.030 3 C 0.012 3.988 4 C -0.120 4.120 5 C 0.021 3.979 6 C -0.392 4.392 7 C -0.072 4.072 8 C -0.478 4.478 9 H 0.098 0.902 10 C -0.200 4.200 11 N -0.415 5.415 12 Si 0.744 3.256 13 H -0.126 1.126 14 H -0.106 1.106 15 H -0.106 1.106 16 S 0.275 5.725 17 C -0.343 4.343 18 C -0.015 4.015 19 C -0.264 4.264 20 S 0.007 5.993 21 H 0.157 0.843 22 H 0.133 0.867 23 H 0.103 0.897 24 H 0.169 0.831 25 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.651 8.503 -6.030 10.554 hybrid contribution -1.422 -2.513 2.800 4.022 sum -3.073 5.990 -3.230 7.467 Atomic orbital electron populations 1.81134 1.12384 1.09169 1.09607 1.25524 0.92431 0.92593 0.92496 1.15856 0.83462 0.98792 1.00665 1.20956 0.91788 0.99024 1.00197 1.18080 0.92987 0.93238 0.93569 1.19747 0.90909 1.10767 1.17748 1.21439 0.96525 0.94513 0.94696 1.20507 0.93147 1.07137 1.27006 0.90176 1.28481 0.91142 1.04327 0.96090 1.70610 1.36249 1.15791 1.18809 0.84519 0.85289 0.75198 0.80585 1.12622 1.10571 1.10641 1.84549 1.03137 1.35134 1.49713 1.23194 0.98419 1.04388 1.08277 1.20759 0.91431 0.95237 0.94026 1.20519 0.94572 1.03062 1.08201 1.86759 1.74076 1.16966 1.21501 0.84280 0.86738 0.89706 0.83111 0.93055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -15.30 18.54 19.00 0.35 -14.95 15 2 C 0.28 9.21 14.25 88.33 1.26 10.47 15 3 C 0.02 0.67 5.74 -21.26 -0.12 0.55 15 4 C -0.10 -3.23 9.76 23.14 0.23 -3.00 15 5 C 0.03 1.13 5.85 -21.46 -0.13 1.00 15 6 C -0.37 -15.76 10.13 22.34 0.23 -15.54 15 7 C 0.05 2.04 5.94 22.35 0.13 2.17 15 8 C -0.44 -20.65 9.69 23.10 0.22 -20.42 15 9 H 0.08 3.91 8.06 -2.91 -0.02 3.88 15 10 C 0.02 0.94 5.52 85.28 0.47 1.41 15 11 N -0.79 -36.36 13.66 21.85 0.30 -36.06 15 12 Si 0.93 32.13 24.48 68.60 1.68 33.81 15 13 H -0.20 -6.58 7.11 99.48 0.71 -5.87 15 14 H -0.18 -5.73 6.31 97.06 0.61 -5.12 15 15 H -0.18 -5.89 6.34 97.57 0.62 -5.28 15 16 S 0.02 0.70 15.28 -56.49 -0.86 -0.16 15 17 C -0.23 -8.44 6.46 23.16 0.15 -8.29 15 18 C 0.01 0.32 9.78 22.57 0.22 0.54 15 19 C -0.15 -4.56 6.16 23.05 0.14 -4.42 15 20 S -0.15 -4.07 24.78 -56.49 -1.40 -5.47 15 21 H 0.14 4.19 8.06 -2.91 -0.02 4.17 15 22 H 0.11 4.83 8.06 -2.92 -0.02 4.80 15 23 H 0.29 13.08 8.72 -92.71 -0.81 12.27 15 24 H 0.15 3.97 8.06 -2.91 -0.02 3.95 15 25 H 0.10 2.51 9.55 73.80 0.70 3.22 15 Total: -1.00 -46.94 256.27 4.61 -42.33 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: 1.74 Total: 16.03 kcal Atomic # 6 Polarization: -38.33 SS G_CDS: 2.80 Total: -35.53 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: 0.65 Total: -51.01 kcal Atomic # 14 Polarization: 32.13 SS G_CDS: 1.68 Total: 33.81 kcal Atomic # 16 Polarization: -3.37 SS G_CDS: -2.26 Total: -5.63 kcal Total: -46.94 4.61 -42.33 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396216912.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.011 kcal (2) G-P(sol) polarization free energy of solvation -46.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds