Wall clock time and date at job start Mon Mar 30 2020 07:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.33936 * 124.72582 * 307.26064 * 3 2 1 5 5 C 1.40365 * 115.56971 * 179.97438 * 4 3 2 6 6 C 1.42140 * 128.51168 * 180.02562 * 5 4 3 7 7 C 1.35898 * 121.26614 * 180.02562 * 6 5 4 8 8 C 1.39255 * 120.89352 * 0.28199 * 7 6 5 9 9 S 1.76197 * 120.19798 * 179.72238 * 8 7 6 10 10 C 1.41311 * 119.60327 * 359.46768 * 8 7 6 11 11 C 1.40633 * 120.22770 * 180.27393 * 10 8 7 12 12 H 1.08001 * 120.00192 * 321.57685 * 11 10 8 13 13 C 1.39810 * 119.99999 * 141.58655 * 11 10 8 14 14 N 1.30991 * 120.00139 * 338.26100 * 13 11 10 15 15 Si 1.86802 * 120.00210 * 158.26107 * 13 11 10 16 16 H 1.48503 * 109.47083 * 59.99634 * 15 13 11 17 17 H 1.48499 * 109.47064 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46917 * 299.99744 * 15 13 11 19 19 C 1.39596 * 112.59718 * 0.02562 * 5 4 3 20 20 S 1.75495 * 124.72447 * 127.26270 * 3 2 1 21 21 H 1.07998 * 122.21819 * 359.97438 * 4 3 2 22 22 H 1.07997 * 119.37192 * 0.02924 * 6 5 4 23 23 H 1.08001 * 119.55562 * 179.97438 * 7 6 5 24 24 H 1.40996 * 99.99900 * 89.99698 * 9 8 7 25 25 H 0.97006 * 120.00704 * 185.42199 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3313 -0.6655 0.8761 5 6 4.7170 -0.5301 0.6980 6 6 5.7680 -1.1097 1.4595 7 6 7.0716 -0.8767 1.1541 8 6 7.4197 -0.0551 0.0850 9 16 9.1158 0.2402 -0.2902 10 6 6.4046 0.5360 -0.7005 11 6 6.7413 1.3634 -1.7867 12 1 7.5795 2.0402 -1.7106 13 6 5.9910 1.3098 -2.9652 14 7 5.2766 0.2465 -3.2390 15 14 6.0072 2.7544 -4.1494 16 1 7.3956 2.9943 -4.6186 17 1 5.1373 2.4498 -5.3137 18 1 5.5021 3.9673 -3.4574 19 6 5.0411 0.2922 -0.3825 20 16 3.5673 0.8744 -1.1480 21 1 2.9086 -1.2670 1.6673 22 1 5.5261 -1.7474 2.2968 23 1 7.8481 -1.3310 1.7516 24 1 9.3563 -0.8205 -1.1874 25 1 4.8191 0.1758 -4.0915 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396217192.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:29:32 Heat of formation + Delta-G solvation = 52.643450 kcal Electronic energy + Delta-G solvation = -14183.292198 eV Core-core repulsion = 11764.645298 eV Total energy + Delta-G solvation = -2418.646900 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.05032 -38.02271 -36.41900 -35.11393 -31.92373 -30.35715 -27.37495 -25.34107 -23.55923 -21.72938 -20.16546 -18.66493 -18.35292 -17.21258 -16.78005 -16.11305 -15.92451 -15.26761 -15.20087 -14.68096 -14.39907 -14.11698 -14.03050 -13.50950 -13.38381 -13.13759 -12.79477 -12.68212 -12.29421 -11.95156 -11.66048 -11.44419 -11.20900 -10.84415 -10.20203 -9.15030 -8.92216 -8.60622 -8.20396 -6.52549 -0.54216 0.46231 0.86170 0.98029 1.35388 1.39947 1.45674 1.48894 1.56274 1.87657 2.08668 2.16518 2.27176 2.64694 2.83975 3.37686 4.25011 4.37917 4.68042 4.80850 4.90249 5.07912 5.20487 5.29208 5.59135 5.71634 5.92605 6.19642 6.29449 6.39997 6.63947 6.76081 8.12369 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.016651 B = 0.010649 C = 0.006726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.133281 B = 2628.778959 C = 4161.853473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C 0.311 3.689 3 C -0.172 4.172 4 C -0.043 4.043 5 C -0.062 4.062 6 C -0.189 4.189 7 C -0.041 4.041 8 C -0.235 4.235 9 S -0.150 6.150 10 C 0.154 3.846 11 C -0.472 4.472 12 H 0.099 0.901 13 C 0.044 3.956 14 N -0.790 5.790 15 Si 0.952 3.048 16 H -0.257 1.257 17 H -0.266 1.266 18 H -0.255 1.255 19 C -0.171 4.171 20 S 0.182 5.818 21 H 0.171 0.829 22 H 0.140 0.860 23 H 0.133 0.867 24 H 0.064 0.936 25 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.570 -0.323 2.969 3.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.126 5.126 2 C -0.004 4.004 3 C -0.291 4.291 4 C -0.081 4.081 5 C -0.070 4.070 6 C -0.213 4.213 7 C -0.063 4.063 8 C -0.353 4.353 9 S 0.007 5.993 10 C 0.146 3.854 11 C -0.500 4.500 12 H 0.117 0.883 13 C -0.175 4.175 14 N -0.414 5.414 15 Si 0.773 3.227 16 H -0.181 1.181 17 H -0.190 1.190 18 H -0.179 1.179 19 C -0.291 4.291 20 S 0.452 5.548 21 H 0.188 0.812 22 H 0.158 0.842 23 H 0.150 0.850 24 H 0.029 0.971 25 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.892 0.924 1.446 1.934 hybrid contribution -0.019 -1.362 -0.067 1.364 sum -0.911 -0.438 1.379 1.710 Atomic orbital electron populations 1.81209 1.11642 1.10250 1.09492 1.24414 0.90949 0.92439 0.92596 1.19932 0.88682 1.13079 1.07420 1.20299 0.91109 0.98207 0.98464 1.18326 0.93355 0.98893 0.96457 1.20382 0.90559 1.06977 1.03367 1.20749 0.96440 0.94615 0.94474 1.21133 0.93338 1.12970 1.07838 1.85760 1.09294 1.44018 1.60198 1.17349 0.87985 0.88570 0.91519 1.19756 1.13320 1.19447 0.97476 0.88290 1.26574 0.91993 0.98245 1.00708 1.69802 1.21707 1.26444 1.23491 0.85615 0.80064 0.79318 0.77679 1.18072 1.19032 1.17891 1.23236 0.97364 1.07731 1.00757 1.84060 0.93421 1.49029 1.28277 0.81174 0.84184 0.84951 0.97094 0.89050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -15.88 18.54 19.00 0.35 -15.53 15 2 C 0.31 10.57 15.76 88.33 1.39 11.97 15 3 C -0.17 -6.01 6.19 22.54 0.14 -5.87 15 4 C -0.04 -1.40 10.01 21.81 0.22 -1.18 15 5 C -0.06 -2.38 5.86 -21.47 -0.13 -2.51 15 6 C -0.19 -6.67 10.00 22.70 0.23 -6.45 15 7 C -0.04 -1.52 9.67 21.97 0.21 -1.31 15 8 C -0.23 -10.17 6.19 23.27 0.14 -10.03 15 9 S -0.15 -5.89 24.52 -56.49 -1.39 -7.27 15 10 C 0.15 7.22 5.39 -20.98 -0.11 7.11 15 11 C -0.47 -22.22 8.07 23.24 0.19 -22.03 15 12 H 0.10 4.66 7.46 -2.91 -0.02 4.64 15 13 C 0.04 1.95 4.23 85.20 0.36 2.31 15 14 N -0.79 -35.98 10.74 21.81 0.23 -35.75 15 15 Si 0.95 34.55 29.62 68.60 2.03 36.58 15 16 H -0.26 -9.15 7.11 99.48 0.71 -8.44 15 17 H -0.27 -9.22 7.11 99.48 0.71 -8.51 15 18 H -0.25 -9.14 7.11 99.48 0.71 -8.44 15 19 C -0.17 -7.54 5.75 23.56 0.14 -7.40 15 20 S 0.18 7.30 19.88 -56.49 -1.12 6.18 15 21 H 0.17 4.26 8.06 -2.91 -0.02 4.24 15 22 H 0.14 3.86 8.06 -2.91 -0.02 3.84 15 23 H 0.13 4.20 8.06 -2.91 -0.02 4.17 15 24 H 0.06 2.52 9.55 73.80 0.70 3.22 15 25 H 0.30 12.51 8.31 -92.70 -0.77 11.74 15 Total: -1.00 -49.56 261.21 4.85 -44.71 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: 1.96 Total: 6.47 kcal Atomic # 6 Polarization: -38.16 SS G_CDS: 2.78 Total: -35.38 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: 0.59 Total: -51.28 kcal Atomic # 14 Polarization: 34.55 SS G_CDS: 2.03 Total: 36.58 kcal Atomic # 16 Polarization: 1.41 SS G_CDS: -2.51 Total: -1.10 kcal Total: -49.56 4.85 -44.71 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396217192.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.352 kcal (2) G-P(sol) polarization free energy of solvation -49.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds