Wall clock time and date at job start Mon Mar 30 2020 07:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.38458 * 119.88717 * 182.15619 * 3 2 1 5 5 C 1.41714 * 120.38908 * 180.29396 * 4 3 2 6 6 C 1.39943 * 128.29993 * 179.97438 * 5 4 3 7 7 C 1.36879 * 115.01678 * 180.02562 * 6 5 4 8 8 C 1.39962 * 124.81758 * 180.02562 * 7 6 5 9 9 H 1.08003 * 119.99938 * 0.02562 * 8 7 6 10 10 C 1.40162 * 120.00266 * 179.97438 * 8 7 6 11 11 N 1.30763 * 120.00043 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00116 * 180.02562 * 10 8 7 13 13 H 1.48494 * 109.47431 * 90.00518 * 12 10 8 14 14 H 1.48504 * 109.46934 * 210.00268 * 12 10 8 15 15 H 1.48498 * 109.46980 * 329.99838 * 12 10 8 16 16 S 1.75430 * 110.36627 * 0.02562 * 7 6 5 17 17 C 1.40313 * 118.82218 * 359.97438 * 5 4 3 18 18 C 1.40481 * 120.03887 * 359.97438 * 17 5 4 19 19 S 1.76199 * 119.73984 * 180.02562 * 18 17 5 20 20 C 1.37895 * 120.52242 * 0.02562 * 18 17 5 21 21 H 1.08005 * 119.80341 * 0.25697 * 4 3 2 22 22 H 1.08001 * 122.48678 * 0.02562 * 6 5 4 23 23 H 0.97001 * 120.00586 * 179.97438 * 11 10 8 24 24 H 1.34500 * 102.99944 * 270.02071 * 19 18 17 25 25 H 1.08000 * 119.99730 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2573 1.2005 0.0452 5 6 4.6744 1.2138 0.0394 6 6 5.5316 2.3193 0.0795 7 6 6.8666 2.0176 0.0610 8 6 7.8997 2.9612 0.0943 9 1 7.6673 4.0150 0.1385 10 6 9.2359 2.5387 0.0714 11 7 9.5174 1.2628 0.0185 12 14 10.6147 3.7981 0.1166 13 1 10.9862 4.0751 1.5274 14 1 11.7951 3.2661 -0.6107 15 1 10.1590 5.0543 -0.5311 16 16 7.0989 0.2802 -0.0104 17 6 5.3621 -0.0081 -0.0123 18 6 4.6468 -1.2163 -0.0566 19 16 5.5184 -2.7463 -0.1206 20 6 3.2678 -1.2144 -0.0504 21 1 2.7119 2.1319 0.0844 22 1 5.1668 3.3349 0.1219 23 1 10.4421 0.9703 0.0023 24 1 5.6626 -2.9573 -1.4411 25 1 2.7264 -2.1483 -0.0842 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396217256.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:29:19 Heat of formation + Delta-G solvation = 43.576587 kcal Electronic energy + Delta-G solvation = -13732.808338 eV Core-core repulsion = 11313.768270 eV Total energy + Delta-G solvation = -2419.040069 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.64320 -36.22564 -35.09209 -33.34940 -30.52974 -29.42558 -25.82432 -23.65430 -21.97017 -20.53853 -18.27948 -17.66789 -16.67555 -16.31026 -15.48157 -14.74200 -14.32693 -13.83258 -13.52875 -13.19966 -13.00944 -12.51216 -12.36777 -12.10887 -11.88529 -11.77497 -11.53213 -11.19208 -10.70054 -10.54173 -10.43682 -10.04686 -9.55112 -9.29776 -8.71025 -7.73031 -7.71206 -7.38179 -6.71130 -4.90797 1.30575 1.58369 2.12955 2.60818 2.75045 2.81394 2.95722 3.00012 3.07977 3.37887 3.45312 3.59722 3.64638 4.38905 4.41220 4.79443 5.55747 5.71495 6.11580 6.19239 6.45849 6.56395 6.70395 6.83110 6.89905 7.20563 7.39440 7.55446 7.73535 7.86241 8.02784 8.18935 9.45501 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.028913 B = 0.006215 C = 0.005130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.204461 B = 4503.920242 C = 5456.665213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C 0.277 3.723 3 C -0.037 4.037 4 C -0.070 4.070 5 C 0.010 3.990 6 C -0.358 4.358 7 C 0.041 3.959 8 C -0.373 4.373 9 H 0.102 0.898 10 C 0.052 3.948 11 N -0.771 5.771 12 Si 0.940 3.060 13 H -0.261 1.261 14 H -0.270 1.270 15 H -0.255 1.255 16 S 0.194 5.806 17 C -0.214 4.214 18 C -0.038 4.038 19 S -0.144 6.144 20 C -0.104 4.104 21 H 0.118 0.882 22 H 0.112 0.888 23 H 0.306 0.694 24 H 0.071 0.929 25 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.778 -1.251 -0.506 2.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.130 5.130 2 C -0.038 4.038 3 C -0.046 4.046 4 C -0.094 4.094 5 C 0.000 4.000 6 C -0.382 4.382 7 C -0.079 4.079 8 C -0.406 4.406 9 H 0.120 0.880 10 C -0.171 4.171 11 N -0.396 5.396 12 Si 0.763 3.237 13 H -0.186 1.186 14 H -0.194 1.194 15 H -0.179 1.179 16 S 0.456 5.544 17 C -0.333 4.333 18 C -0.155 4.155 19 S 0.014 5.986 20 C -0.129 4.129 21 H 0.136 0.864 22 H 0.130 0.870 23 H 0.119 0.881 24 H 0.035 0.965 25 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.983 -3.137 -0.370 3.730 hybrid contribution -0.701 2.217 -0.943 2.509 sum 1.282 -0.921 -1.314 2.054 Atomic orbital electron populations 1.81151 1.12277 1.08536 1.11053 1.25914 0.92776 0.92642 0.92443 1.15479 0.83264 0.94720 1.11095 1.20982 0.92888 0.95561 0.99925 1.17854 0.91962 0.92381 0.97785 1.19581 0.90891 0.96766 1.31008 1.21620 0.95487 0.96310 0.94482 1.19415 0.89033 0.95445 1.36749 0.87998 1.26378 1.01571 0.96860 0.92245 1.68529 1.23738 1.15729 1.31628 0.85709 0.78055 0.79999 0.79943 1.18575 1.19434 1.17891 1.85275 0.92598 1.00679 1.75863 1.24278 1.03904 0.94767 1.10332 1.19926 0.93766 0.92494 1.09333 1.85671 1.75865 1.25883 1.11158 1.20769 0.92071 0.95871 1.04191 0.86352 0.86974 0.88068 0.96479 0.85676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -8.29 18.54 41.84 0.78 -7.52 15 2 C 0.28 4.78 15.30 -22.48 -0.34 4.43 15 3 C -0.04 -0.65 5.71 -107.11 -0.61 -1.27 15 4 C -0.07 -1.31 9.77 -38.17 -0.37 -1.68 15 5 C 0.01 0.22 5.85 -107.15 -0.63 -0.40 15 6 C -0.36 -8.05 10.14 -39.44 -0.40 -8.45 15 7 C 0.04 0.96 6.11 -39.43 -0.24 0.71 15 8 C -0.37 -8.33 9.27 -38.21 -0.35 -8.68 15 9 H 0.10 2.13 7.85 -52.48 -0.41 1.72 15 10 C 0.05 1.07 5.50 -17.28 -0.10 0.98 15 11 N -0.77 -16.42 10.58 55.56 0.59 -15.83 15 12 Si 0.94 15.43 29.56 -169.99 -5.03 10.40 15 13 H -0.26 -4.26 7.11 56.52 0.40 -3.86 15 14 H -0.27 -4.34 7.11 56.52 0.40 -3.93 15 15 H -0.26 -4.16 7.11 56.52 0.40 -3.76 15 16 S 0.19 4.31 19.73 -107.50 -2.12 2.19 15 17 C -0.21 -4.58 6.36 -37.96 -0.24 -4.82 15 18 C -0.04 -0.73 6.12 -38.86 -0.24 -0.97 15 19 S -0.14 -2.46 25.41 -107.50 -2.73 -5.19 15 20 C -0.10 -1.82 9.46 -38.93 -0.37 -2.19 15 21 H 0.12 1.97 8.06 -52.48 -0.42 1.54 15 22 H 0.11 2.38 8.06 -52.49 -0.42 1.96 15 23 H 0.31 5.80 8.29 -40.82 -0.34 5.46 15 24 H 0.07 1.13 9.07 97.61 0.89 2.02 15 25 H 0.13 1.92 8.06 -52.49 -0.42 1.50 15 LS Contribution 264.10 15.07 3.98 3.98 Total: -1.00 -23.30 264.10 -8.35 -31.65 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: 0.07 Total: 2.65 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: -3.89 Total: -22.34 kcal Atomic # 7 Polarization: -24.72 SS G_CDS: 1.36 Total: -23.35 kcal Atomic # 14 Polarization: 15.43 SS G_CDS: -5.03 Total: 10.40 kcal Atomic # 16 Polarization: 1.85 SS G_CDS: -4.85 Total: -3.00 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -23.30 -8.35 -31.65 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396217256.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.228 kcal (2) G-P(sol) polarization free energy of solvation -23.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds