Wall clock time and date at job start Mon Mar 30 2020 07:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39091 * 119.73434 * 127.81312 * 3 2 1 5 5 C 1.39891 * 120.09724 * 180.02562 * 4 3 2 6 6 C 1.40532 * 120.16087 * 180.23742 * 5 4 3 7 7 H 1.07996 * 120.00579 * 154.00188 * 6 5 4 8 8 C 1.39808 * 119.99534 * 333.99739 * 6 5 4 9 9 N 1.30970 * 120.00402 * 342.63646 * 8 6 5 10 10 Si 1.86805 * 119.99921 * 162.63854 * 8 6 5 11 11 H 1.48495 * 109.47155 * 59.99760 * 10 8 6 12 12 H 1.48496 * 109.47272 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.46978 * 300.00058 * 10 8 6 14 14 C 1.48190 * 119.68200 * 359.95355 * 5 4 3 15 15 C 1.40001 * 128.86131 * 180.02562 * 14 5 4 16 16 C 1.32711 * 115.83438 * 180.02562 * 15 14 5 17 17 S 1.75519 * 110.57982 * 0.02562 * 16 15 14 18 18 C 1.39296 * 118.41610 * 0.02562 * 14 5 4 19 19 C 1.40539 * 120.19989 * 0.02562 * 18 14 5 20 20 S 1.76195 * 119.46107 * 179.97438 * 19 18 14 21 21 H 1.08002 * 119.95086 * 0.02562 * 4 3 2 22 22 H 0.96998 * 120.00447 * 180.02562 * 9 8 6 23 23 H 1.08000 * 122.08421 * 359.97438 * 15 14 5 24 24 H 1.08007 * 124.71380 * 179.97438 * 16 15 14 25 25 H 1.40992 * 100.00225 * 89.99699 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2576 0.7414 -0.9542 5 6 4.6564 0.7471 -0.9615 6 6 5.3545 1.4990 -1.9218 7 1 6.3523 1.8533 -1.7095 8 6 4.7571 1.7884 -3.1523 9 7 3.7182 1.0995 -3.5540 10 14 5.4407 3.1576 -4.2235 11 1 6.8522 2.8554 -4.5721 12 1 4.6357 3.2621 -5.4669 13 1 5.3782 4.4433 -3.4831 14 6 5.3988 -0.0387 0.0522 15 6 6.7823 -0.1696 0.2218 16 6 7.1710 -0.9475 1.2243 17 16 5.7807 -1.6053 2.0697 18 6 4.6704 -0.7665 0.9904 19 6 3.2654 -0.7475 0.9641 20 16 2.3637 -1.6759 2.1597 21 1 2.7122 1.3131 -1.6905 22 1 3.3039 1.3000 -4.4079 23 1 7.4892 0.3307 -0.4235 24 1 8.2001 -1.1486 1.4834 25 1 2.2373 -0.7079 3.1770 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396217317.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:34:08 Heat of formation + Delta-G solvation = 60.436036 kcal Electronic energy + Delta-G solvation = -14107.604335 eV Core-core repulsion = 11689.295347 eV Total energy + Delta-G solvation = -2418.308988 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.41597 -36.01663 -34.86703 -33.61423 -30.34598 -28.81063 -25.89773 -23.38769 -22.08849 -19.99984 -18.87148 -17.29148 -16.47364 -16.01675 -15.34294 -14.78838 -14.44657 -13.46434 -13.37524 -13.11294 -12.87293 -12.44984 -12.09349 -12.01763 -11.77033 -11.60744 -11.48528 -11.09129 -10.83953 -10.64857 -10.17000 -10.13194 -9.78388 -9.50702 -8.51269 -7.66851 -7.48884 -7.42978 -7.10229 -4.94895 1.30375 1.99490 2.37747 2.59312 2.72921 2.76220 2.78076 2.90792 2.98363 3.40255 3.44559 3.53101 3.79483 4.23244 4.82501 5.04889 5.66288 6.08071 6.21052 6.39989 6.44817 6.47461 6.75969 6.85864 7.10347 7.28923 7.32505 7.45440 7.83962 8.05615 8.16013 8.26984 9.40881 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.018578 B = 0.008812 C = 0.006093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.804571 B = 3176.597826 C = 4594.697019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.281 3.719 3 C 0.064 3.936 4 C -0.145 4.145 5 C 0.157 3.843 6 C -0.390 4.390 7 H 0.099 0.901 8 C 0.065 3.935 9 N -0.743 5.743 10 Si 0.925 3.075 11 H -0.257 1.257 12 H -0.271 1.271 13 H -0.255 1.255 14 C -0.176 4.176 15 C -0.065 4.065 16 C -0.274 4.274 17 S 0.053 5.947 18 C -0.029 4.029 19 C -0.197 4.197 20 S -0.168 6.168 21 H 0.135 0.865 22 H 0.299 0.701 23 H 0.128 0.872 24 H 0.149 0.851 25 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.493 1.214 1.403 5.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.126 5.126 2 C -0.034 4.034 3 C 0.055 3.945 4 C -0.171 4.171 5 C 0.151 3.849 6 C -0.416 4.416 7 H 0.117 0.883 8 C -0.161 4.161 9 N -0.363 5.363 10 Si 0.747 3.253 11 H -0.181 1.181 12 H -0.195 1.195 13 H -0.179 1.179 14 C -0.185 4.185 15 C -0.095 4.095 16 C -0.408 4.408 17 S 0.315 5.685 18 C -0.148 4.148 19 C -0.320 4.320 20 S -0.010 6.010 21 H 0.153 0.847 22 H 0.110 0.890 23 H 0.146 0.854 24 H 0.167 0.833 25 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 3.005 -0.499 2.943 4.236 hybrid contribution 1.355 2.547 -1.783 3.391 sum 4.360 2.048 1.161 4.955 Atomic orbital electron populations 1.81030 1.12286 1.09683 1.09619 1.25843 0.92909 0.92422 0.92186 1.15919 0.82979 0.98695 0.96919 1.21084 0.93747 1.02996 0.99257 1.18326 0.90776 0.87043 0.88781 1.19868 1.02096 1.22829 0.96759 0.88330 1.26295 0.94185 0.96608 0.99002 1.69833 1.15479 1.31085 1.19936 0.86029 0.80301 0.80428 0.78537 1.18097 1.19530 1.17933 1.19079 0.91886 1.05236 1.02347 1.19674 0.94728 0.98034 0.97032 1.24786 1.01164 1.10150 1.04671 1.83813 0.96034 1.52933 1.35725 1.22247 0.95198 0.99166 0.98201 1.19141 0.91118 1.16412 1.05294 1.86469 1.73731 1.22243 1.18558 0.84732 0.88975 0.85389 0.83290 0.96882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -9.95 18.54 41.84 0.78 -9.17 15 2 C 0.28 6.15 14.14 -22.47 -0.32 5.83 15 3 C 0.06 1.41 5.74 -106.78 -0.61 0.79 15 4 C -0.14 -3.25 8.32 -38.65 -0.32 -3.57 15 5 C 0.16 3.50 5.74 -104.33 -0.60 2.91 15 6 C -0.39 -8.18 8.78 -38.13 -0.33 -8.51 15 7 H 0.10 1.90 7.48 -52.49 -0.39 1.51 15 8 C 0.06 1.28 5.12 -17.33 -0.09 1.20 15 9 N -0.74 -15.63 11.00 55.54 0.61 -15.02 15 10 Si 0.92 14.78 29.59 -169.99 -5.03 9.75 15 11 H -0.26 -4.06 7.11 56.52 0.40 -3.66 15 12 H -0.27 -4.29 7.11 56.52 0.40 -3.89 15 13 H -0.26 -4.09 7.11 56.52 0.40 -3.69 15 14 C -0.18 -3.81 6.01 -104.75 -0.63 -4.44 15 15 C -0.06 -1.23 9.73 -40.81 -0.40 -1.62 15 16 C -0.27 -4.73 11.12 28.85 0.32 -4.41 15 17 S 0.05 0.98 22.91 -107.50 -2.46 -1.48 15 18 C -0.03 -0.63 6.34 -38.32 -0.24 -0.87 15 19 C -0.20 -4.32 6.20 -37.84 -0.23 -4.55 15 20 S -0.17 -3.35 24.32 -107.50 -2.61 -5.96 15 21 H 0.14 3.04 6.19 -52.49 -0.32 2.72 15 22 H 0.30 5.64 8.30 -40.82 -0.34 5.30 15 23 H 0.13 2.18 7.68 -52.49 -0.40 1.77 15 24 H 0.15 2.11 8.06 -52.48 -0.42 1.69 15 25 H 0.07 1.24 9.55 96.90 0.93 2.17 15 LS Contribution 262.19 15.07 3.95 3.95 Total: -1.00 -23.28 262.19 -7.98 -31.26 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: 0.25 Total: 3.93 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: -3.46 Total: -17.26 kcal Atomic # 7 Polarization: -25.58 SS G_CDS: 1.39 Total: -24.19 kcal Atomic # 14 Polarization: 14.78 SS G_CDS: -5.03 Total: 9.75 kcal Atomic # 16 Polarization: -2.37 SS G_CDS: -5.08 Total: -7.45 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -23.28 -7.98 -31.26 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396217317.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.693 kcal (2) G-P(sol) polarization free energy of solvation -23.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds