Wall clock time and date at job start Mon Mar 30 2020 07:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39091 * 119.73434 * 127.81312 * 3 2 1 5 5 C 1.39891 * 120.09724 * 180.02562 * 4 3 2 6 6 C 1.40532 * 120.16087 * 180.23742 * 5 4 3 7 7 H 1.07996 * 120.00579 * 154.00188 * 6 5 4 8 8 C 1.39808 * 119.99534 * 333.99739 * 6 5 4 9 9 N 1.30970 * 120.00402 * 342.63646 * 8 6 5 10 10 Si 1.86805 * 119.99921 * 162.63854 * 8 6 5 11 11 H 1.48495 * 109.47155 * 59.99760 * 10 8 6 12 12 H 1.48496 * 109.47272 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.46978 * 300.00058 * 10 8 6 14 14 C 1.48190 * 119.68200 * 359.95355 * 5 4 3 15 15 C 1.40001 * 128.86131 * 180.02562 * 14 5 4 16 16 C 1.32711 * 115.83438 * 180.02562 * 15 14 5 17 17 S 1.75519 * 110.57982 * 0.02562 * 16 15 14 18 18 C 1.39296 * 118.41610 * 0.02562 * 14 5 4 19 19 C 1.40539 * 120.19989 * 0.02562 * 18 14 5 20 20 S 1.76195 * 119.46107 * 179.97438 * 19 18 14 21 21 H 1.08002 * 119.95086 * 0.02562 * 4 3 2 22 22 H 0.96998 * 120.00447 * 180.02562 * 9 8 6 23 23 H 1.08000 * 122.08421 * 359.97438 * 15 14 5 24 24 H 1.08007 * 124.71380 * 179.97438 * 16 15 14 25 25 H 1.40992 * 100.00225 * 89.99699 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2576 0.7414 -0.9542 5 6 4.6564 0.7471 -0.9615 6 6 5.3545 1.4990 -1.9218 7 1 6.3523 1.8533 -1.7095 8 6 4.7571 1.7884 -3.1523 9 7 3.7182 1.0995 -3.5540 10 14 5.4407 3.1576 -4.2235 11 1 6.8522 2.8554 -4.5721 12 1 4.6357 3.2621 -5.4669 13 1 5.3782 4.4433 -3.4831 14 6 5.3988 -0.0387 0.0522 15 6 6.7823 -0.1696 0.2218 16 6 7.1710 -0.9475 1.2243 17 16 5.7807 -1.6053 2.0697 18 6 4.6704 -0.7665 0.9904 19 6 3.2654 -0.7475 0.9641 20 16 2.3637 -1.6759 2.1597 21 1 2.7122 1.3131 -1.6905 22 1 3.3039 1.3000 -4.4079 23 1 7.4892 0.3307 -0.4235 24 1 8.2001 -1.1486 1.4834 25 1 2.2373 -0.7079 3.1770 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396217317.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:34:07 Heat of formation + Delta-G solvation = 50.994425 kcal Electronic energy + Delta-G solvation = -14108.013754 eV Core-core repulsion = 11689.295347 eV Total energy + Delta-G solvation = -2418.718407 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.00204 -37.71874 -36.40855 -35.20727 -31.95145 -30.38677 -27.49096 -24.95487 -23.69106 -21.53850 -20.44828 -18.87485 -18.06660 -17.55124 -16.78522 -16.33411 -16.04479 -15.05354 -14.93587 -14.62172 -14.46717 -14.06651 -13.71338 -13.56678 -13.34102 -13.09995 -12.89329 -12.58423 -12.32829 -12.07123 -11.70359 -11.64398 -11.29360 -11.06919 -10.09063 -9.24376 -9.06670 -8.96174 -8.61882 -6.55446 -0.30714 0.41661 0.83985 1.07126 1.25840 1.40472 1.43727 1.55925 1.59178 1.72536 1.86857 2.11942 2.22638 2.60959 3.11641 3.40921 4.23812 4.54959 4.73243 4.85217 4.90198 4.90935 5.19138 5.33975 5.50802 5.69366 5.77475 5.86239 6.23799 6.45350 6.54462 6.55186 7.93130 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.018578 B = 0.008812 C = 0.006093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.804571 B = 3176.597826 C = 4594.697019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C 0.287 3.713 3 C 0.053 3.947 4 C -0.162 4.162 5 C 0.132 3.868 6 C -0.403 4.403 7 H 0.113 0.887 8 C 0.033 3.967 9 N -0.775 5.775 10 Si 0.994 3.006 11 H -0.248 1.248 12 H -0.269 1.269 13 H -0.254 1.254 14 C -0.187 4.187 15 C -0.087 4.087 16 C -0.250 4.250 17 S 0.079 5.921 18 C -0.059 4.059 19 C -0.216 4.216 20 S -0.162 6.162 21 H 0.124 0.876 22 H 0.306 0.694 23 H 0.146 0.854 24 H 0.188 0.812 25 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.434 1.472 1.499 7.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.136 5.136 2 C -0.027 4.027 3 C 0.044 3.956 4 C -0.188 4.188 5 C 0.126 3.874 6 C -0.428 4.428 7 H 0.130 0.870 8 C -0.190 4.190 9 N -0.396 5.396 10 Si 0.812 3.188 11 H -0.172 1.172 12 H -0.193 1.193 13 H -0.178 1.178 14 C -0.197 4.197 15 C -0.117 4.117 16 C -0.383 4.383 17 S 0.341 5.659 18 C -0.178 4.178 19 C -0.338 4.338 20 S -0.005 6.005 21 H 0.142 0.858 22 H 0.117 0.883 23 H 0.164 0.836 24 H 0.205 0.795 25 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 4.939 -0.257 3.055 5.813 hybrid contribution 0.825 2.402 -1.746 3.082 sum 5.763 2.145 1.308 6.287 Atomic orbital electron populations 1.81010 1.12385 1.10152 1.10055 1.25891 0.92914 0.92087 0.91852 1.16012 0.82922 0.99253 0.97389 1.21019 0.94196 1.03907 0.99631 1.18627 0.90940 0.87943 0.89863 1.20209 1.02807 1.22730 0.97007 0.86957 1.27132 0.94007 0.98107 0.99742 1.69876 1.16529 1.32435 1.20722 0.85018 0.79838 0.77256 0.76657 1.17195 1.19308 1.17813 1.19441 0.93309 1.04896 1.02066 1.19833 0.93841 0.99527 0.98460 1.25283 1.02542 1.07667 1.02842 1.83689 0.95530 1.52019 1.34645 1.22560 0.95584 1.00208 0.99432 1.19302 0.91816 1.16800 1.05849 1.86312 1.73577 1.22204 1.18360 0.85785 0.88258 0.83624 0.79480 0.95864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -20.55 18.54 19.01 0.35 -20.20 15 2 C 0.29 12.81 14.14 88.33 1.25 14.06 15 3 C 0.05 2.40 5.74 -21.26 -0.12 2.27 15 4 C -0.16 -7.49 8.32 22.88 0.19 -7.30 15 5 C 0.13 5.99 5.74 -19.67 -0.11 5.88 15 6 C -0.40 -16.79 8.78 23.21 0.20 -16.58 15 7 H 0.11 4.21 7.48 -2.91 -0.02 4.19 15 8 C 0.03 1.29 5.12 85.20 0.44 1.73 15 9 N -0.77 -32.96 11.00 21.81 0.24 -32.72 15 10 Si 0.99 29.22 29.59 68.60 2.03 31.25 15 11 H -0.25 -6.94 7.11 99.48 0.71 -6.23 15 12 H -0.27 -7.74 7.11 99.48 0.71 -7.03 15 13 H -0.25 -7.39 7.11 99.48 0.71 -6.68 15 14 C -0.19 -8.01 6.01 -19.95 -0.12 -8.13 15 15 C -0.09 -3.12 9.73 21.52 0.21 -2.91 15 16 C -0.25 -7.80 11.12 66.65 0.74 -7.06 15 17 S 0.08 2.75 22.91 -56.49 -1.29 1.45 15 18 C -0.06 -2.51 6.34 23.09 0.15 -2.37 15 19 C -0.22 -9.50 6.20 23.40 0.15 -9.35 15 20 S -0.16 -6.40 24.32 -56.49 -1.37 -7.78 15 21 H 0.12 5.87 6.19 -2.91 -0.02 5.85 15 22 H 0.31 11.64 8.30 -92.71 -0.77 10.87 15 23 H 0.15 4.60 7.68 -2.91 -0.02 4.57 15 24 H 0.19 4.38 8.06 -2.91 -0.02 4.35 15 25 H 0.08 2.82 9.55 73.80 0.70 3.52 15 Total: -1.00 -49.24 262.19 4.89 -44.35 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: 1.97 Total: 13.41 kcal Atomic # 6 Polarization: -32.73 SS G_CDS: 2.97 Total: -29.76 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: 0.59 Total: -52.92 kcal Atomic # 14 Polarization: 29.22 SS G_CDS: 2.03 Total: 31.25 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -2.67 Total: -6.33 kcal Total: -49.24 4.89 -44.35 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396217317.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.345 kcal (2) G-P(sol) polarization free energy of solvation -49.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds