Wall clock time and date at job start Mon Mar 30 2020 07:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39662 * 119.73165 * 168.55966 * 3 2 1 5 5 C 1.36095 * 120.78866 * 180.02562 * 4 3 2 6 6 C 1.40862 * 120.18986 * 359.95203 * 5 4 3 7 7 C 1.40604 * 119.95194 * 180.02562 * 6 5 4 8 8 H 1.07999 * 119.99583 * 154.53591 * 7 6 5 9 9 C 1.40187 * 119.99934 * 334.53158 * 7 6 5 10 10 N 1.30704 * 120.00083 * 342.44624 * 9 7 6 11 11 Si 1.86796 * 119.99985 * 162.44822 * 9 7 6 12 12 H 1.48497 * 109.47229 * 89.99898 * 11 9 7 13 13 H 1.48503 * 109.46893 * 209.99958 * 11 9 7 14 14 H 1.48502 * 109.46909 * 329.99573 * 11 9 7 15 15 C 1.41965 * 120.09718 * 0.07025 * 6 5 4 16 16 S 1.76002 * 130.60955 * 179.97438 * 15 6 5 17 17 C 1.75500 * 91.55865 * 179.97438 * 16 15 6 18 18 S 1.76198 * 124.68826 * 179.97438 * 17 16 15 19 19 C 1.33243 * 110.62144 * 0.02562 * 17 16 15 20 20 C 1.39487 * 119.83250 * 359.95557 * 15 6 5 21 21 H 1.07996 * 119.60787 * 359.97438 * 4 3 2 22 22 H 1.07994 * 119.90851 * 179.97438 * 5 4 3 23 23 H 0.96996 * 120.00315 * 180.02562 * 10 9 7 24 24 H 1.34508 * 102.99881 * 270.02413 * 18 17 16 25 25 H 1.07996 * 122.17816 * 180.26730 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2601 1.1896 -0.2405 5 6 4.6208 1.2147 -0.2460 6 6 5.3520 0.0348 -0.0067 7 6 6.7576 0.0666 -0.0130 8 1 7.3168 -0.6687 0.5465 9 6 7.4332 1.0526 -0.7456 10 7 6.8059 1.7173 -1.6800 11 14 9.2298 1.4165 -0.3863 12 1 10.0892 0.5506 -1.2330 13 1 9.5156 2.8425 -0.6864 14 1 9.5128 1.1458 1.0461 15 6 4.6717 -1.1866 0.2399 16 16 5.2956 -2.7997 0.5662 17 6 3.6720 -3.4529 0.6984 18 16 3.2946 -5.1400 1.0390 19 6 2.7644 -2.4970 0.5045 20 6 3.2772 -1.2153 0.2456 21 1 2.7089 2.0998 -0.4252 22 1 5.1415 2.1420 -0.4341 23 1 7.2734 2.3993 -2.1871 24 1 3.2300 -5.6891 -0.1872 25 1 1.7034 -2.6938 0.5486 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396217547.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:47 Heat of formation + Delta-G solvation = 56.263847 kcal Electronic energy + Delta-G solvation = -13946.731595 eV Core-core repulsion = 11528.241687 eV Total energy + Delta-G solvation = -2418.489908 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.68816 -35.60759 -35.28605 -33.44304 -30.56865 -28.48002 -26.34036 -23.19016 -22.14980 -20.20308 -18.65184 -17.72924 -17.13116 -15.84813 -15.08723 -15.04052 -14.54585 -13.72570 -13.47256 -13.25413 -12.67109 -12.52197 -12.14583 -12.00295 -11.91704 -11.46027 -11.38067 -10.98491 -10.87997 -10.71711 -10.37057 -10.05163 -9.80676 -9.55747 -8.58684 -7.98309 -7.72593 -7.39288 -7.07160 -4.87706 0.99361 1.72202 2.16571 2.32295 2.74055 2.78768 2.80529 2.85844 2.89440 3.22909 3.52764 3.63994 3.74255 4.41281 5.14583 5.15030 5.71316 5.78152 6.12360 6.23300 6.44526 6.61466 6.73248 6.94010 7.07917 7.35424 7.50521 7.62975 8.01443 8.17194 8.26935 8.52122 9.53272 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.018665 B = 0.007843 C = 0.005620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.791302 B = 3569.083302 C = 4980.700490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C 0.287 3.713 3 C -0.169 4.169 4 C -0.023 4.023 5 C -0.178 4.178 6 C 0.157 3.843 7 C -0.416 4.416 8 H 0.092 0.908 9 C 0.073 3.927 10 N -0.750 5.750 11 Si 0.917 3.083 12 H -0.263 1.263 13 H -0.269 1.269 14 H -0.253 1.253 15 C -0.197 4.197 16 S 0.112 5.888 17 C -0.211 4.211 18 S -0.072 6.072 19 C -0.060 4.060 20 C -0.003 4.003 21 H 0.104 0.896 22 H 0.132 0.868 23 H 0.294 0.706 24 H 0.064 0.936 25 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.475 -3.492 1.687 5.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.183 5.183 2 C -0.022 4.022 3 C -0.179 4.179 4 C -0.044 4.044 5 C -0.201 4.201 6 C 0.150 3.850 7 C -0.443 4.443 8 H 0.110 0.890 9 C -0.152 4.152 10 N -0.370 5.370 11 Si 0.740 3.260 12 H -0.188 1.188 13 H -0.194 1.194 14 H -0.176 1.176 15 C -0.315 4.315 16 S 0.377 5.623 17 C -0.439 4.439 18 S 0.083 5.917 19 C -0.098 4.098 20 C -0.014 4.014 21 H 0.122 0.878 22 H 0.149 0.851 23 H 0.106 0.894 24 H 0.029 0.971 25 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.042 -4.864 2.028 6.085 hybrid contribution -0.053 1.466 -1.384 2.017 sum 2.989 -3.398 0.644 4.571 Atomic orbital electron populations 1.81080 1.12565 1.09325 1.15317 1.25997 0.92825 0.92109 0.91303 1.15168 0.82601 0.93979 1.26147 1.20196 0.94605 0.94512 0.95088 1.20718 0.91934 0.98080 1.09381 1.17101 0.93001 0.88042 0.86810 1.19886 0.91534 1.10286 1.22557 0.89010 1.26159 1.02286 0.93861 0.92858 1.69732 1.39469 1.15765 1.12081 0.86113 0.80015 0.78946 0.80973 1.18756 1.19364 1.17635 1.22805 0.94949 0.97142 1.16630 1.83803 1.04421 1.00415 1.73614 1.24754 1.00514 0.99275 1.19306 1.85493 1.92628 1.01216 1.12370 1.20418 0.99750 0.91562 0.98057 1.17560 0.91911 0.91615 1.00321 0.87784 0.85083 0.89411 0.97132 0.84894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -10.94 18.54 41.84 0.78 -10.16 15 2 C 0.29 6.03 14.84 -22.48 -0.33 5.70 15 3 C -0.17 -3.56 5.83 -105.64 -0.62 -4.17 15 4 C -0.02 -0.46 9.61 -39.82 -0.38 -0.84 15 5 C -0.18 -3.86 8.59 -39.36 -0.34 -4.20 15 6 C 0.16 3.54 5.58 -106.59 -0.60 2.95 15 7 C -0.42 -9.10 8.80 -37.96 -0.33 -9.43 15 8 H 0.09 1.93 7.74 -52.49 -0.41 1.52 15 9 C 0.07 1.50 5.12 -17.30 -0.09 1.41 15 10 N -0.75 -15.82 10.97 55.56 0.61 -15.21 15 11 Si 0.92 15.31 29.60 -169.99 -5.03 10.28 15 12 H -0.26 -4.40 7.11 56.52 0.40 -4.00 15 13 H -0.27 -4.39 7.11 56.52 0.40 -3.99 15 14 H -0.25 -4.24 7.11 56.52 0.40 -3.83 15 15 C -0.20 -4.27 6.36 -37.69 -0.24 -4.51 15 16 S 0.11 2.12 22.86 -107.50 -2.46 -0.34 15 17 C -0.21 -3.81 6.69 28.99 0.19 -3.62 15 18 S -0.07 -1.08 26.15 -107.50 -2.81 -3.89 15 19 C -0.06 -1.16 9.61 -40.49 -0.39 -1.55 15 20 C 0.00 -0.05 5.84 -106.80 -0.62 -0.68 15 21 H 0.10 1.89 8.06 -52.49 -0.42 1.47 15 22 H 0.13 2.85 6.17 -52.49 -0.32 2.52 15 23 H 0.29 5.54 8.29 -40.82 -0.34 5.20 15 24 H 0.06 0.89 9.07 97.61 0.89 1.78 15 25 H 0.13 2.42 7.93 -52.49 -0.42 2.00 15 LS Contribution 263.57 15.07 3.97 3.97 Total: -1.00 -23.12 263.57 -8.51 -31.63 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: 0.18 Total: 2.67 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: -3.75 Total: -18.96 kcal Atomic # 7 Polarization: -26.75 SS G_CDS: 1.38 Total: -25.37 kcal Atomic # 14 Polarization: 15.31 SS G_CDS: -5.03 Total: 10.28 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -5.27 Total: -4.23 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -23.12 -8.51 -31.63 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396217547.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.892 kcal (2) G-P(sol) polarization free energy of solvation -23.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds