Wall clock time and date at job start Mon Mar 30 2020 07:26:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13600 * 1
3 3 C 1.43197 * 179.97438 * 2 1
4 4 C 1.39313 * 119.94147 * 96.33086 * 3 2 1
5 5 C 1.38325 * 120.06252 * 179.97438 * 4 3 2
6 6 C 1.37379 * 120.57648 * 359.97438 * 5 4 3
7 7 C 1.41427 * 120.71602 * 0.02562 * 6 5 4
8 8 C 1.45204 * 128.70106 * 180.28045 * 7 6 5
9 9 S 1.76194 * 123.12306 * 0.02562 * 8 7 6
10 10 C 1.37886 * 113.74689 * 180.18495 * 8 7 6
11 11 C 1.39525 * 124.61335 * 179.80308 * 10 8 7
12 12 H 1.07991 * 119.99898 * 359.72719 * 11 10 8
13 13 C 1.39970 * 119.99420 * 179.44967 * 11 10 8
14 14 N 1.30967 * 120.00378 * 0.02562 * 13 11 10
15 15 Si 1.86800 * 119.99408 * 180.02562 * 13 11 10
16 16 H 1.48500 * 109.47350 * 0.02562 * 15 13 11
17 17 H 1.48503 * 109.47257 * 119.99950 * 15 13 11
18 18 H 1.48496 * 109.47422 * 240.00018 * 15 13 11
19 19 S 1.75226 * 110.77052 * 359.54202 * 10 8 7
20 20 C 1.39882 * 118.99558 * 359.97438 * 7 6 5
21 21 H 1.08001 * 119.96577 * 359.94979 * 4 3 2
22 22 H 1.08003 * 119.70910 * 179.97438 * 5 4 3
23 23 H 1.07998 * 119.64154 * 180.02562 * 6 5 4
24 24 H 1.40994 * 99.99958 * 270.19992 * 9 8 7
25 25 H 0.97009 * 119.99734 * 179.97438 * 14 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.5680 0.0006 0.0000
4 6 3.2632 0.1341 -1.1998
5 6 4.6465 0.1355 -1.2027
6 6 5.3479 0.0067 -0.0285
7 6 4.6712 -0.1306 1.2058
8 6 5.2319 -0.2715 2.5378
9 16 6.9648 -0.2955 2.8554
10 6 4.2822 -0.3882 3.5306
11 6 4.5687 -0.5382 4.8878
12 1 5.5948 -0.5739 5.2223
13 6 3.5259 -0.6366 5.8164
14 7 2.2815 -0.5883 5.4112
15 14 3.9095 -0.8367 7.6336
16 1 5.3814 -0.8620 7.8290
17 1 3.3298 0.3021 8.3902
18 1 3.3224 -2.1085 8.1264
19 16 2.6664 -0.3151 2.8564
20 6 3.2725 -0.1328 1.2157
21 1 2.7217 0.2361 -2.1287
22 1 5.1797 0.2389 -2.1362
23 1 6.4277 0.0102 -0.0482
24 1 7.2147 -1.6788 2.7453
25 1 1.5588 -0.6569 6.0548
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000396217987.mol2 25
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:26:42
Heat of formation + Delta-G solvation = 29.858484 kcal
Electronic energy + Delta-G solvation = -13960.613772 eV
Core-core repulsion = 11540.978842 eV
Total energy + Delta-G solvation = -2419.634930 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 260.998 amu
Computer time = 1.46 seconds
Orbital eigenvalues (eV)
-39.99109 -37.62564 -36.74412 -34.74648 -31.95685 -31.03276 -27.38476 -24.81161
-23.80399 -21.65440 -20.47421 -18.83563 -17.73019 -17.61378 -16.72525 -16.06499
-15.76037 -15.39631 -15.14160 -14.72993 -14.22381 -14.09839 -13.85619 -13.56760
-13.33541 -13.16718 -13.05651 -12.48319 -12.07842 -11.98876 -11.94836 -11.58703
-11.09228 -10.93871 -10.14014 -9.39532 -9.05048 -8.58357 -8.38322 -6.77653
-0.13767 0.48519 0.87900 1.09843 1.33137 1.44093 1.55629 1.57815
1.65368 1.83450 2.08775 2.15328 2.49869 2.84374 3.04351 3.18934
4.22748 4.29881 4.55032 4.73966 4.81537 4.91560 5.25418 5.32876
5.49201 5.59657 5.80386 5.94820 6.10510 6.28502 6.40759 6.44382
7.79267
Molecular weight = 261.00amu
Principal moments of inertia in cm(-1)
A = 0.021062 B = 0.008568 C = 0.006112
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1329.076787 B = 3267.072152 C = 4580.028069
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.465 5.465
2 C 0.278 3.722
3 C -0.008 4.008
4 C -0.099 4.099
5 C -0.102 4.102
6 C -0.109 4.109
7 C 0.009 3.991
8 C -0.378 4.378
9 S -0.110 6.110
10 C 0.055 3.945
11 C -0.377 4.377
12 H 0.119 0.881
13 C 0.017 3.983
14 N -0.787 5.787
15 Si 1.011 2.989
16 H -0.246 1.246
17 H -0.257 1.257
18 H -0.259 1.259
19 S 0.121 5.879
20 C -0.223 4.223
21 H 0.157 0.843
22 H 0.168 0.832
23 H 0.134 0.866
24 H 0.035 0.965
25 H 0.316 0.684
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.307 0.055 -2.798 5.137
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.142 5.142
2 C -0.035 4.035
3 C -0.017 4.017
4 C -0.121 4.121
5 C -0.122 4.122
6 C -0.130 4.130
7 C -0.001 4.001
8 C -0.497 4.497
9 S 0.045 5.955
10 C -0.068 4.068
11 C -0.410 4.410
12 H 0.137 0.863
13 C -0.204 4.204
14 N -0.412 5.412
15 Si 0.829 3.171
16 H -0.169 1.169
17 H -0.181 1.181
18 H -0.183 1.183
19 S 0.380 5.620
20 C -0.341 4.341
21 H 0.174 0.826
22 H 0.186 0.814
23 H 0.152 0.848
24 H 0.000 1.000
25 H 0.130 0.870
Dipole moment (debyes) X Y Z Total
from point charges 1.823 0.194 -1.902 2.642
hybrid contribution 0.657 -0.986 -0.012 1.184
sum 2.480 -0.791 -1.914 3.231
Atomic orbital electron populations
1.81108 1.12746 1.11255 1.09059 1.26092 0.93033 0.92254 0.92158
1.15513 0.82766 1.09776 0.93608 1.21146 0.94857 1.00875 0.95237
1.21037 0.93045 0.99687 0.98429 1.21415 1.00509 1.00564 0.90498
1.19121 0.90741 0.96468 0.93742 1.20560 0.93812 1.42753 0.92608
1.85490 1.05153 1.10247 1.94610 1.21880 0.94123 0.93556 0.97193
1.19970 0.97136 1.34318 0.89555 0.86283 1.27455 0.93339 0.90950
1.08641 1.68694 1.01725 1.30236 1.40519 0.84655 0.80886 0.79500
0.72102 1.16918 1.18133 1.18334 1.85109 1.06948 1.78455 0.91508
1.23761 0.97920 1.12015 1.00395 0.82586 0.81436 0.84778 0.99995
0.87020
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.47 -19.10 18.54 19.00 0.35 -18.74 15
2 C 0.28 10.92 15.02 88.33 1.33 12.24 15
3 C -0.01 -0.29 5.77 -21.06 -0.12 -0.42 15
4 C -0.10 -2.90 9.73 22.55 0.22 -2.68 15
5 C -0.10 -2.80 9.98 22.09 0.22 -2.58 15
6 C -0.11 -3.78 9.85 22.85 0.23 -3.56 15
7 C 0.01 0.39 6.01 -20.31 -0.12 0.26 15
8 C -0.38 -17.83 6.38 23.98 0.15 -17.68 15
9 S -0.11 -4.52 24.73 -56.49 -1.40 -5.91 15
10 C 0.05 2.71 6.11 22.50 0.14 2.85 15
11 C -0.38 -17.74 8.92 23.00 0.21 -17.54 15
12 H 0.12 5.39 7.14 -2.92 -0.02 5.37 15
13 C 0.02 0.73 5.50 85.24 0.47 1.20 15
14 N -0.79 -35.24 10.55 21.84 0.23 -35.01 15
15 Si 1.01 32.01 29.56 68.60 2.03 34.04 15
16 H -0.25 -7.60 7.11 99.48 0.71 -6.89 15
17 H -0.26 -7.81 7.11 99.48 0.71 -7.10 15
18 H -0.26 -7.87 7.11 99.48 0.71 -7.17 15
19 S 0.12 5.85 19.65 -56.49 -1.11 4.74 15
20 C -0.22 -9.85 6.32 23.38 0.15 -9.70 15
21 H 0.16 3.43 8.06 -2.91 -0.02 3.41 15
22 H 0.17 3.04 8.06 -2.91 -0.02 3.02 15
23 H 0.13 4.23 7.96 -2.91 -0.02 4.20 15
24 H 0.03 1.39 9.55 73.80 0.70 2.10 15
25 H 0.32 12.50 8.30 -92.70 -0.77 11.73 15
Total: -1.00 -54.76 263.00 4.93 -49.83
By element:
Atomic # 1 Polarization: 6.69 SS G_CDS: 1.97 Total: 8.66 kcal
Atomic # 6 Polarization: -40.45 SS G_CDS: 2.86 Total: -37.59 kcal
Atomic # 7 Polarization: -54.34 SS G_CDS: 0.58 Total: -53.76 kcal
Atomic # 14 Polarization: 32.01 SS G_CDS: 2.03 Total: 34.04 kcal
Atomic # 16 Polarization: 1.33 SS G_CDS: -2.51 Total: -1.18 kcal
Total: -54.76 4.93 -49.83 kcal
The number of atoms in the molecule is 25
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000396217987.mol2 25
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 79.689 kcal
(2) G-P(sol) polarization free energy of solvation -54.760 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.929 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.929 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.831 kcal
(6) G-S(sol) free energy of system = (1) + (5) 29.858 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.46 seconds