Wall clock time and date at job start Mon Mar 30 2020 07:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39313 * 119.94147 * 96.33086 * 3 2 1 5 5 C 1.38325 * 120.06252 * 179.97438 * 4 3 2 6 6 C 1.37379 * 120.57648 * 359.97438 * 5 4 3 7 7 C 1.41427 * 120.71602 * 0.02562 * 6 5 4 8 8 C 1.45204 * 128.70106 * 180.28045 * 7 6 5 9 9 S 1.76194 * 123.12306 * 0.02562 * 8 7 6 10 10 C 1.37886 * 113.74689 * 180.18495 * 8 7 6 11 11 C 1.39525 * 124.61335 * 179.80308 * 10 8 7 12 12 H 1.07991 * 119.99898 * 359.72719 * 11 10 8 13 13 C 1.39970 * 119.99420 * 179.44967 * 11 10 8 14 14 N 1.30967 * 120.00378 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99408 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47350 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47257 * 119.99950 * 15 13 11 18 18 H 1.48496 * 109.47422 * 240.00018 * 15 13 11 19 19 S 1.75226 * 110.77052 * 359.54202 * 10 8 7 20 20 C 1.39882 * 118.99558 * 359.97438 * 7 6 5 21 21 H 1.08001 * 119.96577 * 359.94979 * 4 3 2 22 22 H 1.08003 * 119.70910 * 179.97438 * 5 4 3 23 23 H 1.07998 * 119.64154 * 180.02562 * 6 5 4 24 24 H 1.40994 * 99.99958 * 270.19992 * 9 8 7 25 25 H 0.97009 * 119.99734 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2632 0.1341 -1.1998 5 6 4.6465 0.1355 -1.2027 6 6 5.3479 0.0067 -0.0285 7 6 4.6712 -0.1306 1.2058 8 6 5.2319 -0.2715 2.5378 9 16 6.9648 -0.2955 2.8554 10 6 4.2822 -0.3882 3.5306 11 6 4.5687 -0.5382 4.8878 12 1 5.5948 -0.5739 5.2223 13 6 3.5259 -0.6366 5.8164 14 7 2.2815 -0.5883 5.4112 15 14 3.9095 -0.8367 7.6336 16 1 5.3814 -0.8620 7.8290 17 1 3.3298 0.3021 8.3902 18 1 3.3224 -2.1085 8.1264 19 16 2.6664 -0.3151 2.8564 20 6 3.2725 -0.1328 1.2157 21 1 2.7217 0.2361 -2.1287 22 1 5.1797 0.2389 -2.1362 23 1 6.4277 0.0102 -0.0482 24 1 7.2147 -1.6788 2.7453 25 1 1.5588 -0.6569 6.0548 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396217987.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:42 Heat of formation + Delta-G solvation = 29.858484 kcal Electronic energy + Delta-G solvation = -13960.613772 eV Core-core repulsion = 11540.978842 eV Total energy + Delta-G solvation = -2419.634930 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -39.99109 -37.62564 -36.74412 -34.74648 -31.95685 -31.03276 -27.38476 -24.81161 -23.80399 -21.65440 -20.47421 -18.83563 -17.73019 -17.61378 -16.72525 -16.06499 -15.76037 -15.39631 -15.14160 -14.72993 -14.22381 -14.09839 -13.85619 -13.56760 -13.33541 -13.16718 -13.05651 -12.48319 -12.07842 -11.98876 -11.94836 -11.58703 -11.09228 -10.93871 -10.14014 -9.39532 -9.05048 -8.58357 -8.38322 -6.77653 -0.13767 0.48519 0.87900 1.09843 1.33137 1.44093 1.55629 1.57815 1.65368 1.83450 2.08775 2.15328 2.49869 2.84374 3.04351 3.18934 4.22748 4.29881 4.55032 4.73966 4.81537 4.91560 5.25418 5.32876 5.49201 5.59657 5.80386 5.94820 6.10510 6.28502 6.40759 6.44382 7.79267 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.021062 B = 0.008568 C = 0.006112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.076787 B = 3267.072152 C = 4580.028069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C 0.278 3.722 3 C -0.008 4.008 4 C -0.099 4.099 5 C -0.102 4.102 6 C -0.109 4.109 7 C 0.009 3.991 8 C -0.378 4.378 9 S -0.110 6.110 10 C 0.055 3.945 11 C -0.377 4.377 12 H 0.119 0.881 13 C 0.017 3.983 14 N -0.787 5.787 15 Si 1.011 2.989 16 H -0.246 1.246 17 H -0.257 1.257 18 H -0.259 1.259 19 S 0.121 5.879 20 C -0.223 4.223 21 H 0.157 0.843 22 H 0.168 0.832 23 H 0.134 0.866 24 H 0.035 0.965 25 H 0.316 0.684 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.307 0.055 -2.798 5.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.142 5.142 2 C -0.035 4.035 3 C -0.017 4.017 4 C -0.121 4.121 5 C -0.122 4.122 6 C -0.130 4.130 7 C -0.001 4.001 8 C -0.497 4.497 9 S 0.045 5.955 10 C -0.068 4.068 11 C -0.410 4.410 12 H 0.137 0.863 13 C -0.204 4.204 14 N -0.412 5.412 15 Si 0.829 3.171 16 H -0.169 1.169 17 H -0.181 1.181 18 H -0.183 1.183 19 S 0.380 5.620 20 C -0.341 4.341 21 H 0.174 0.826 22 H 0.186 0.814 23 H 0.152 0.848 24 H 0.000 1.000 25 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.823 0.194 -1.902 2.642 hybrid contribution 0.657 -0.986 -0.012 1.184 sum 2.480 -0.791 -1.914 3.231 Atomic orbital electron populations 1.81108 1.12746 1.11255 1.09059 1.26092 0.93033 0.92254 0.92158 1.15513 0.82766 1.09776 0.93608 1.21146 0.94857 1.00875 0.95237 1.21037 0.93045 0.99687 0.98429 1.21415 1.00509 1.00564 0.90498 1.19121 0.90741 0.96468 0.93742 1.20560 0.93812 1.42753 0.92608 1.85490 1.05153 1.10247 1.94610 1.21880 0.94123 0.93556 0.97193 1.19970 0.97136 1.34318 0.89555 0.86283 1.27455 0.93339 0.90950 1.08641 1.68694 1.01725 1.30236 1.40519 0.84655 0.80886 0.79500 0.72102 1.16918 1.18133 1.18334 1.85109 1.06948 1.78455 0.91508 1.23761 0.97920 1.12015 1.00395 0.82586 0.81436 0.84778 0.99995 0.87020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -19.10 18.54 19.00 0.35 -18.74 15 2 C 0.28 10.92 15.02 88.33 1.33 12.24 15 3 C -0.01 -0.29 5.77 -21.06 -0.12 -0.42 15 4 C -0.10 -2.90 9.73 22.55 0.22 -2.68 15 5 C -0.10 -2.80 9.98 22.09 0.22 -2.58 15 6 C -0.11 -3.78 9.85 22.85 0.23 -3.56 15 7 C 0.01 0.39 6.01 -20.31 -0.12 0.26 15 8 C -0.38 -17.83 6.38 23.98 0.15 -17.68 15 9 S -0.11 -4.52 24.73 -56.49 -1.40 -5.91 15 10 C 0.05 2.71 6.11 22.50 0.14 2.85 15 11 C -0.38 -17.74 8.92 23.00 0.21 -17.54 15 12 H 0.12 5.39 7.14 -2.92 -0.02 5.37 15 13 C 0.02 0.73 5.50 85.24 0.47 1.20 15 14 N -0.79 -35.24 10.55 21.84 0.23 -35.01 15 15 Si 1.01 32.01 29.56 68.60 2.03 34.04 15 16 H -0.25 -7.60 7.11 99.48 0.71 -6.89 15 17 H -0.26 -7.81 7.11 99.48 0.71 -7.10 15 18 H -0.26 -7.87 7.11 99.48 0.71 -7.17 15 19 S 0.12 5.85 19.65 -56.49 -1.11 4.74 15 20 C -0.22 -9.85 6.32 23.38 0.15 -9.70 15 21 H 0.16 3.43 8.06 -2.91 -0.02 3.41 15 22 H 0.17 3.04 8.06 -2.91 -0.02 3.02 15 23 H 0.13 4.23 7.96 -2.91 -0.02 4.20 15 24 H 0.03 1.39 9.55 73.80 0.70 2.10 15 25 H 0.32 12.50 8.30 -92.70 -0.77 11.73 15 Total: -1.00 -54.76 263.00 4.93 -49.83 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: 1.97 Total: 8.66 kcal Atomic # 6 Polarization: -40.45 SS G_CDS: 2.86 Total: -37.59 kcal Atomic # 7 Polarization: -54.34 SS G_CDS: 0.58 Total: -53.76 kcal Atomic # 14 Polarization: 32.01 SS G_CDS: 2.03 Total: 34.04 kcal Atomic # 16 Polarization: 1.33 SS G_CDS: -2.51 Total: -1.18 kcal Total: -54.76 4.93 -49.83 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396217987.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.689 kcal (2) G-P(sol) polarization free energy of solvation -54.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds