Wall clock time and date at job start Mon Mar 30 2020 07:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.38421 * 119.82385 * 25.34631 * 3 2 1 5 5 C 1.40754 * 119.79604 * 180.02562 * 4 3 2 6 6 C 1.41343 * 119.96591 * 180.02562 * 5 4 3 7 7 H 1.07999 * 119.99909 * 204.79980 * 6 5 4 8 8 C 1.39822 * 120.00054 * 24.79211 * 6 5 4 9 9 N 1.30907 * 120.00189 * 18.02143 * 8 6 5 10 10 Si 1.86806 * 120.00021 * 198.02191 * 8 6 5 11 11 H 1.48499 * 109.47006 * 60.00119 * 10 8 6 12 12 H 1.48500 * 109.47023 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.46845 * 300.00297 * 10 8 6 14 14 C 1.40047 * 120.07101 * 0.02562 * 5 4 3 15 15 C 1.40464 * 120.47874 * 359.97438 * 14 5 4 16 16 C 1.45529 * 128.96325 * 180.02562 * 15 14 5 17 17 C 1.32700 * 114.72954 * 179.97438 * 16 15 14 18 18 S 1.76193 * 124.29517 * 179.97438 * 17 16 15 19 19 S 1.75247 * 111.40495 * 359.97438 * 17 16 15 20 20 C 1.40184 * 119.22198 * 0.02562 * 15 14 5 21 21 H 1.08000 * 120.10196 * 359.97074 * 4 3 2 22 22 H 0.96995 * 120.00519 * 179.97438 * 9 8 6 23 23 H 1.08000 * 119.76126 * 179.97438 * 14 5 4 24 24 H 1.08001 * 122.63310 * 359.97438 * 16 15 14 25 25 H 1.34505 * 102.99905 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2569 -1.0843 -0.5141 5 6 4.6644 -1.0833 -0.5133 6 6 5.3715 -2.1891 -1.0378 7 1 6.3767 -2.3960 -0.7016 8 6 4.7695 -3.0151 -1.9919 9 7 3.7243 -2.5927 -2.6574 10 14 5.4566 -4.7215 -2.3170 11 1 5.4065 -5.5216 -1.0670 12 1 4.6457 -5.3901 -3.3660 13 1 6.8641 -4.6090 -2.7766 14 6 5.3651 0.0121 0.0067 15 6 4.6734 1.1169 0.5301 16 6 5.2076 2.3401 1.1100 17 6 4.2902 3.2069 1.5200 18 16 4.6556 4.7641 2.2588 19 16 2.6691 2.6059 1.2334 20 6 3.2716 1.1109 0.5270 21 1 2.7160 -1.9294 -0.9137 22 1 3.3069 -3.1655 -3.3196 23 1 6.4451 0.0075 0.0051 24 1 6.2674 2.5277 1.1996 25 1 3.4363 5.2774 2.5015 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396218448.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:30:07 Heat of formation + Delta-G solvation = 58.367170 kcal Electronic energy + Delta-G solvation = -13825.677561 eV Core-core repulsion = 11407.278860 eV Total energy + Delta-G solvation = -2418.398701 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.50993 -35.98161 -35.13913 -33.12679 -30.54842 -28.70605 -25.80811 -23.03100 -22.81396 -20.55125 -18.59365 -17.60816 -16.66722 -16.04639 -15.46822 -14.92098 -14.53011 -13.58366 -13.52985 -13.45669 -12.63682 -12.57185 -12.40070 -12.02167 -11.98299 -11.56796 -11.34684 -11.05942 -10.68653 -10.65559 -10.41482 -10.29793 -9.95971 -9.54648 -8.74331 -8.46796 -7.35647 -7.19351 -6.98978 -4.69884 1.38050 1.47760 1.82012 1.82579 2.60512 2.74276 2.81206 2.93288 2.94693 3.06267 3.30685 3.70032 3.78703 4.31556 4.70888 5.19651 5.66013 5.87596 6.08354 6.27746 6.43360 6.64005 6.84514 6.89716 7.04327 7.22964 7.48202 7.68565 8.04952 8.17647 8.39380 8.47527 9.82001 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.028288 B = 0.005927 C = 0.004973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.567138 B = 4722.685288 C = 5628.502649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C 0.274 3.726 3 C -0.001 4.001 4 C -0.057 4.057 5 C 0.106 3.894 6 C -0.444 4.444 7 H 0.090 0.910 8 C 0.073 3.927 9 N -0.786 5.786 10 Si 0.916 3.084 11 H -0.260 1.260 12 H -0.276 1.276 13 H -0.262 1.262 14 C -0.177 4.177 15 C -0.029 4.029 16 C -0.069 4.069 17 C -0.180 4.180 18 S -0.057 6.057 19 S 0.029 5.971 20 C -0.188 4.188 21 H 0.139 0.861 22 H 0.290 0.710 23 H 0.111 0.889 24 H 0.143 0.857 25 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.956 4.523 3.980 7.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.134 5.134 2 C -0.040 4.040 3 C -0.010 4.010 4 C -0.081 4.081 5 C 0.102 3.898 6 C -0.473 4.473 7 H 0.108 0.892 8 C -0.147 4.147 9 N -0.410 5.410 10 Si 0.739 3.261 11 H -0.184 1.184 12 H -0.201 1.201 13 H -0.186 1.186 14 C -0.201 4.201 15 C -0.037 4.037 16 C -0.108 4.108 17 C -0.406 4.406 18 S 0.105 5.895 19 S 0.286 5.714 20 C -0.307 4.307 21 H 0.156 0.844 22 H 0.101 0.899 23 H 0.129 0.871 24 H 0.161 0.839 25 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 1.029 5.950 4.479 7.518 hybrid contribution 0.689 -1.790 -0.852 2.099 sum 1.718 4.160 3.627 5.780 Atomic orbital electron populations 1.81075 1.12327 1.09143 1.10843 1.26130 0.93110 0.92463 0.92310 1.15184 0.82721 0.96128 1.06945 1.21631 0.94995 0.95587 0.95854 1.17271 0.90761 0.91671 0.90072 1.19599 1.01719 1.07337 1.18655 0.89196 1.26018 0.94188 1.00349 0.94126 1.69762 1.17772 1.36844 1.16645 0.86210 0.80005 0.80681 0.79165 1.18442 1.20124 1.18604 1.20904 0.98209 0.92388 1.08605 1.18671 0.90536 0.94270 1.00225 1.20765 0.99183 0.92049 0.98801 1.24510 1.00475 1.01969 1.13681 1.85501 1.12420 1.14565 1.77032 1.83767 1.04417 1.15163 1.68083 1.21657 0.95646 0.98058 1.15326 0.84351 0.89923 0.87089 0.83927 0.96173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.10 18.54 41.84 0.78 -9.33 15 2 C 0.27 5.94 15.03 -22.47 -0.34 5.60 15 3 C 0.00 -0.03 5.75 -106.62 -0.61 -0.65 15 4 C -0.06 -1.28 8.34 -38.56 -0.32 -1.60 15 5 C 0.11 2.39 5.55 -107.09 -0.59 1.79 15 6 C -0.44 -9.89 9.02 -37.81 -0.34 -10.23 15 7 H 0.09 1.88 7.91 -52.49 -0.41 1.46 15 8 C 0.07 1.58 5.12 -17.35 -0.09 1.49 15 9 N -0.79 -17.79 10.97 55.54 0.61 -17.18 15 10 Si 0.92 16.28 29.60 -169.99 -5.03 11.25 15 11 H -0.26 -4.61 7.11 56.52 0.40 -4.21 15 12 H -0.28 -4.89 7.11 56.52 0.40 -4.49 15 13 H -0.26 -4.60 7.11 56.52 0.40 -4.20 15 14 C -0.18 -3.66 9.81 -38.07 -0.37 -4.04 15 15 C -0.03 -0.58 6.02 -105.42 -0.63 -1.21 15 16 C -0.07 -1.19 10.29 -38.57 -0.40 -1.59 15 17 C -0.18 -3.02 6.63 28.85 0.19 -2.82 15 18 S -0.06 -0.77 26.13 -107.50 -2.81 -3.58 15 19 S 0.03 0.53 22.89 -107.50 -2.46 -1.93 15 20 C -0.19 -3.93 6.36 -37.57 -0.24 -4.17 15 21 H 0.14 3.21 6.16 -52.49 -0.32 2.89 15 22 H 0.29 6.02 8.30 -40.82 -0.34 5.68 15 23 H 0.11 2.08 8.06 -52.49 -0.42 1.65 15 24 H 0.14 2.08 8.06 -52.49 -0.42 1.65 15 25 H 0.08 0.94 9.07 97.61 0.89 1.83 15 LS Contribution 264.91 15.07 3.99 3.99 Total: -1.00 -23.43 264.91 -8.50 -31.94 By element: Atomic # 1 Polarization: 2.09 SS G_CDS: 0.17 Total: 2.26 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: -3.75 Total: -17.43 kcal Atomic # 7 Polarization: -27.89 SS G_CDS: 1.38 Total: -26.50 kcal Atomic # 14 Polarization: 16.28 SS G_CDS: -5.03 Total: 11.25 kcal Atomic # 16 Polarization: -0.24 SS G_CDS: -5.27 Total: -5.51 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -23.43 -8.50 -31.94 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396218448.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.306 kcal (2) G-P(sol) polarization free energy of solvation -23.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds