Wall clock time and date at job start Mon Mar 30 2020 07:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.38421 * 119.82385 * 25.34631 * 3 2 1 5 5 C 1.40754 * 119.79604 * 180.02562 * 4 3 2 6 6 C 1.41343 * 119.96591 * 180.02562 * 5 4 3 7 7 H 1.07999 * 119.99909 * 204.79980 * 6 5 4 8 8 C 1.39822 * 120.00054 * 24.79211 * 6 5 4 9 9 N 1.30907 * 120.00189 * 18.02143 * 8 6 5 10 10 Si 1.86806 * 120.00021 * 198.02191 * 8 6 5 11 11 H 1.48499 * 109.47006 * 60.00119 * 10 8 6 12 12 H 1.48500 * 109.47023 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.46845 * 300.00297 * 10 8 6 14 14 C 1.40047 * 120.07101 * 0.02562 * 5 4 3 15 15 C 1.40464 * 120.47874 * 359.97438 * 14 5 4 16 16 C 1.45529 * 128.96325 * 180.02562 * 15 14 5 17 17 C 1.32700 * 114.72954 * 179.97438 * 16 15 14 18 18 S 1.76193 * 124.29517 * 179.97438 * 17 16 15 19 19 S 1.75247 * 111.40495 * 359.97438 * 17 16 15 20 20 C 1.40184 * 119.22198 * 0.02562 * 15 14 5 21 21 H 1.08000 * 120.10196 * 359.97074 * 4 3 2 22 22 H 0.96995 * 120.00519 * 179.97438 * 9 8 6 23 23 H 1.08000 * 119.76126 * 179.97438 * 14 5 4 24 24 H 1.08001 * 122.63310 * 359.97438 * 16 15 14 25 25 H 1.34505 * 102.99905 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2569 -1.0843 -0.5141 5 6 4.6644 -1.0833 -0.5133 6 6 5.3715 -2.1891 -1.0378 7 1 6.3767 -2.3960 -0.7016 8 6 4.7695 -3.0151 -1.9919 9 7 3.7243 -2.5927 -2.6574 10 14 5.4566 -4.7215 -2.3170 11 1 5.4065 -5.5216 -1.0670 12 1 4.6457 -5.3901 -3.3660 13 1 6.8641 -4.6090 -2.7766 14 6 5.3651 0.0121 0.0067 15 6 4.6734 1.1169 0.5301 16 6 5.2076 2.3401 1.1100 17 6 4.2902 3.2069 1.5200 18 16 4.6556 4.7641 2.2588 19 16 2.6691 2.6059 1.2334 20 6 3.2716 1.1109 0.5270 21 1 2.7160 -1.9294 -0.9137 22 1 3.3069 -3.1655 -3.3196 23 1 6.4451 0.0075 0.0051 24 1 6.2674 2.5277 1.1996 25 1 3.4363 5.2774 2.5015 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396218448.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:30:07 Heat of formation + Delta-G solvation = 49.021687 kcal Electronic energy + Delta-G solvation = -13826.082811 eV Core-core repulsion = 11407.278860 eV Total energy + Delta-G solvation = -2418.803951 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.11351 -37.68608 -36.69985 -34.71241 -32.21409 -30.25440 -27.45355 -24.57262 -24.39973 -22.07520 -20.14541 -18.96947 -18.23767 -17.52788 -16.95435 -16.43326 -16.07096 -15.19168 -15.12069 -14.93255 -14.22684 -14.13145 -13.97137 -13.67720 -13.48297 -13.07149 -12.81260 -12.57978 -12.23380 -12.09219 -11.88703 -11.68060 -11.50474 -11.11559 -10.30973 -9.92727 -8.89839 -8.71358 -8.40262 -6.37776 -0.13930 0.17874 0.26287 0.45909 1.07325 1.23210 1.47403 1.55698 1.57414 1.62054 1.67533 2.11934 2.22419 2.67073 3.00259 3.52816 4.16662 4.43865 4.54804 4.80399 4.86903 5.06382 5.23824 5.24532 5.41333 5.62777 5.85396 6.03045 6.33615 6.47953 6.74750 6.81282 8.23220 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.028288 B = 0.005927 C = 0.004973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.567138 B = 4722.685288 C = 5628.502649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C 0.279 3.721 3 C -0.008 4.008 4 C -0.075 4.075 5 C 0.085 3.915 6 C -0.470 4.470 7 H 0.099 0.901 8 C 0.038 3.962 9 N -0.820 5.820 10 Si 0.981 3.019 11 H -0.259 1.259 12 H -0.276 1.276 13 H -0.254 1.254 14 C -0.175 4.175 15 C -0.033 4.033 16 C -0.076 4.076 17 C -0.176 4.176 18 S -0.016 6.016 19 S 0.026 5.974 20 C -0.207 4.207 21 H 0.124 0.876 22 H 0.293 0.707 23 H 0.130 0.870 24 H 0.174 0.826 25 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.334 5.537 4.737 9.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.144 5.144 2 C -0.034 4.034 3 C -0.016 4.016 4 C -0.099 4.099 5 C 0.081 3.919 6 C -0.498 4.498 7 H 0.117 0.883 8 C -0.178 4.178 9 N -0.445 5.445 10 Si 0.802 3.198 11 H -0.183 1.183 12 H -0.201 1.201 13 H -0.178 1.178 14 C -0.199 4.199 15 C -0.042 4.042 16 C -0.114 4.114 17 C -0.403 4.403 18 S 0.146 5.854 19 S 0.283 5.717 20 C -0.325 4.325 21 H 0.142 0.858 22 H 0.104 0.896 23 H 0.148 0.852 24 H 0.191 0.809 25 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 2.412 6.988 5.249 9.066 hybrid contribution 0.250 -1.905 -0.996 2.164 sum 2.662 5.083 4.254 7.142 Atomic orbital electron populations 1.81056 1.12491 1.09587 1.11314 1.26196 0.93148 0.92098 0.91982 1.15255 0.82610 0.96553 1.07232 1.21512 0.95353 0.95734 0.97311 1.17548 0.90888 0.92650 0.90782 1.19883 1.02387 1.08153 1.19407 0.88347 1.26776 0.94201 1.03357 0.93515 1.69825 1.19092 1.38162 1.17427 0.85223 0.79464 0.76239 0.78843 1.18276 1.20065 1.17838 1.21145 0.99180 0.91974 1.07571 1.19000 0.90293 0.95158 0.99720 1.20913 1.00778 0.90852 0.98842 1.24856 0.99090 1.03608 1.12736 1.85420 1.12491 1.11606 1.75852 1.83735 1.06043 1.13991 1.67943 1.21927 0.96463 0.98752 1.15374 0.85816 0.89595 0.85202 0.80877 0.95413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -20.86 18.54 19.00 0.35 -20.51 15 2 C 0.28 12.34 15.03 88.33 1.33 13.66 15 3 C -0.01 -0.36 5.75 -21.16 -0.12 -0.49 15 4 C -0.08 -3.50 8.34 22.93 0.19 -3.31 15 5 C 0.09 3.89 5.55 -21.46 -0.12 3.77 15 6 C -0.47 -21.09 9.02 23.42 0.21 -20.88 15 7 H 0.10 4.09 7.91 -2.91 -0.02 4.07 15 8 C 0.04 1.66 5.12 85.21 0.44 2.10 15 9 N -0.82 -38.06 10.97 21.81 0.24 -37.82 15 10 Si 0.98 33.23 29.60 68.60 2.03 35.26 15 11 H -0.26 -8.61 7.11 99.48 0.71 -7.90 15 12 H -0.28 -9.20 7.11 99.48 0.71 -8.50 15 13 H -0.25 -8.25 7.11 99.48 0.71 -7.55 15 14 C -0.18 -7.14 9.81 23.25 0.23 -6.91 15 15 C -0.03 -1.30 6.02 -20.38 -0.12 -1.42 15 16 C -0.08 -2.40 10.29 22.98 0.24 -2.16 15 17 C -0.18 -5.44 6.63 66.65 0.44 -4.99 15 18 S -0.02 -0.38 26.13 -56.49 -1.48 -1.86 15 19 S 0.03 0.94 22.89 -56.49 -1.29 -0.36 15 20 C -0.21 -8.56 6.36 23.57 0.15 -8.41 15 21 H 0.12 6.04 6.16 -2.91 -0.02 6.02 15 22 H 0.29 12.50 8.30 -92.71 -0.77 11.73 15 23 H 0.13 4.67 8.06 -2.91 -0.02 4.64 15 24 H 0.17 4.38 8.06 -2.91 -0.02 4.36 15 25 H 0.08 1.78 9.07 73.35 0.67 2.45 15 Total: -1.00 -49.65 264.91 4.64 -45.01 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: 1.93 Total: 9.32 kcal Atomic # 6 Polarization: -31.90 SS G_CDS: 2.86 Total: -29.04 kcal Atomic # 7 Polarization: -58.92 SS G_CDS: 0.59 Total: -58.33 kcal Atomic # 14 Polarization: 33.23 SS G_CDS: 2.03 Total: 35.26 kcal Atomic # 16 Polarization: 0.55 SS G_CDS: -2.77 Total: -2.21 kcal Total: -49.65 4.64 -45.01 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396218448.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.029 kcal (2) G-P(sol) polarization free energy of solvation -49.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds