Wall clock time and date at job start Mon Mar 30 2020 07:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.40613 * 120.12955 * 98.40977 * 3 2 1 5 5 C 1.35236 * 120.57336 * 180.32010 * 4 3 2 6 6 C 1.42494 * 120.93234 * 359.68513 * 5 4 3 7 7 C 1.39538 * 128.21159 * 180.02562 * 6 5 4 8 8 C 1.37120 * 115.07846 * 179.97438 * 7 6 5 9 9 C 1.39870 * 124.86966 * 179.97438 * 8 7 6 10 10 H 1.07996 * 120.00059 * 359.97438 * 9 8 7 11 11 C 1.40269 * 119.99928 * 179.97438 * 9 8 7 12 12 N 1.30706 * 119.99729 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00150 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46893 * 59.99972 * 13 11 9 15 15 H 1.48498 * 109.46942 * 179.97438 * 13 11 9 16 16 H 1.48491 * 109.47041 * 300.00034 * 13 11 9 17 17 S 1.75458 * 110.25699 * 359.97438 * 8 7 6 18 18 C 1.40179 * 118.87721 * 0.02562 * 6 5 4 19 19 C 1.39967 * 120.12688 * 278.13479 * 3 2 1 20 20 S 1.76199 * 120.00996 * 359.97438 * 19 3 2 21 21 H 1.08006 * 119.70777 * 0.02562 * 4 3 2 22 22 H 1.08001 * 119.53627 * 179.70146 * 5 4 3 23 23 H 1.08001 * 122.46028 * 0.02562 * 7 6 5 24 24 H 0.96999 * 119.99390 * 179.97438 * 12 11 9 25 25 H 1.34500 * 102.99685 * 269.72478 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2737 0.1788 -1.2031 5 6 4.6260 0.1745 -1.2144 6 6 5.3680 -0.0033 -0.0110 7 6 6.7535 -0.0327 0.1525 8 6 7.1828 -0.2211 1.4410 9 6 8.5231 -0.2843 1.8362 10 1 9.3080 -0.1819 1.1015 11 6 8.8476 -0.4806 3.1866 12 7 7.8975 -0.6040 4.0757 13 14 10.6375 -0.5658 3.7142 14 1 11.3181 0.7065 3.3630 15 1 10.7112 -0.7772 5.1822 16 1 11.3059 -1.6936 3.0170 17 16 5.8098 -0.3715 2.5230 18 6 4.6726 -0.1757 1.1939 19 6 3.2706 -0.1703 1.1984 20 16 2.3933 -0.3863 2.7112 21 1 2.7309 0.3156 -2.1268 22 1 5.1510 0.3080 -2.1487 23 1 7.4374 0.0853 -0.6750 24 1 8.1220 -0.7402 5.0095 25 1 2.2481 0.8736 3.1591 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396219057.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:29:29 Heat of formation + Delta-G solvation = 34.819339 kcal Electronic energy + Delta-G solvation = -13807.320700 eV Core-core repulsion = 11387.900889 eV Total energy + Delta-G solvation = -2419.419811 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.11477 -37.65003 -36.66870 -34.90286 -31.89803 -31.12375 -27.80512 -24.57799 -23.87271 -21.42621 -20.34952 -19.53730 -18.51924 -17.35280 -16.84428 -16.30918 -15.94155 -15.16297 -14.81169 -14.66902 -14.61157 -14.02277 -13.77206 -13.56246 -13.25823 -13.19396 -13.00900 -12.72546 -12.25798 -11.98926 -11.91748 -11.56975 -11.08113 -10.95213 -10.28745 -9.31794 -9.24023 -8.99161 -8.38495 -6.61408 -0.42555 0.36277 0.65691 1.10321 1.29769 1.39436 1.56008 1.63813 1.73926 1.78712 1.94519 2.13480 2.25799 2.85285 3.12441 3.21214 4.18044 4.41576 4.56747 4.78143 4.83674 4.98742 5.25899 5.36176 5.44384 5.57496 5.84619 5.96177 6.09562 6.36635 6.45178 6.60788 7.85457 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.037999 B = 0.006109 C = 0.005278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.683270 B = 4582.115745 C = 5303.278973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C 0.294 3.706 3 C -0.092 4.092 4 C -0.054 4.054 5 C -0.133 4.133 6 C 0.022 3.978 7 C -0.377 4.377 8 C 0.018 3.982 9 C -0.380 4.380 10 H 0.115 0.885 11 C 0.016 3.984 12 N -0.782 5.782 13 Si 1.013 2.987 14 H -0.253 1.253 15 H -0.262 1.262 16 H -0.252 1.252 17 S 0.155 5.845 18 C -0.263 4.263 19 C 0.007 3.993 20 S -0.147 6.147 21 H 0.157 0.843 22 H 0.146 0.854 23 H 0.120 0.880 24 H 0.317 0.683 25 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.155 0.765 -1.346 3.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.148 5.148 2 C -0.019 4.019 3 C -0.101 4.101 4 C -0.077 4.077 5 C -0.153 4.153 6 C 0.012 3.988 7 C -0.401 4.401 8 C -0.102 4.102 9 C -0.413 4.413 10 H 0.132 0.868 11 C -0.206 4.206 12 N -0.407 5.407 13 Si 0.830 3.170 14 H -0.177 1.177 15 H -0.186 1.186 16 H -0.176 1.176 17 S 0.415 5.585 18 C -0.380 4.380 19 C -0.113 4.113 20 S 0.011 5.989 21 H 0.174 0.826 22 H 0.164 0.836 23 H 0.138 0.862 24 H 0.132 0.868 25 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 0.708 0.173 1.206 1.409 hybrid contribution 1.533 1.271 -1.683 2.607 sum 2.242 1.443 -0.477 2.708 Atomic orbital electron populations 1.81107 1.12401 1.12130 1.09182 1.25454 0.92286 0.92141 0.92055 1.15894 0.83570 1.16178 0.94420 1.20550 0.93713 0.97599 0.95884 1.20849 0.93397 1.04201 0.96849 1.18456 0.93216 0.94389 0.92767 1.19836 0.93129 1.30797 0.96303 1.22055 0.97774 0.94878 0.95491 1.19911 0.91964 1.34581 0.94838 0.86762 1.27389 1.06437 0.91246 0.95500 1.68598 1.37338 1.28974 1.05793 0.84710 0.73227 0.80718 0.78297 1.17673 1.18622 1.17603 1.85105 0.92028 1.76790 1.04584 1.23920 0.96515 1.15330 1.02246 1.20400 0.92572 1.04795 0.93546 1.85686 1.73427 1.14327 1.25417 0.82568 0.83605 0.86221 0.86841 0.94944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -17.77 18.54 19.00 0.35 -17.41 15 2 C 0.29 10.62 14.24 88.33 1.26 11.87 15 3 C -0.09 -3.34 5.77 -21.04 -0.12 -3.46 15 4 C -0.05 -1.70 9.65 22.16 0.21 -1.49 15 5 C -0.13 -4.57 10.00 22.64 0.23 -4.34 15 6 C 0.02 0.94 5.85 -21.43 -0.13 0.81 15 7 C -0.38 -16.88 10.13 22.32 0.23 -16.65 15 8 C 0.02 0.87 6.12 22.40 0.14 1.00 15 9 C -0.38 -16.67 9.27 23.16 0.21 -16.45 15 10 H 0.11 4.59 7.85 -2.91 -0.02 4.57 15 11 C 0.02 0.63 5.50 85.35 0.47 1.10 15 12 N -0.78 -32.93 10.59 21.89 0.23 -32.70 15 13 Si 1.01 29.51 29.56 68.60 2.03 31.54 15 14 H -0.25 -7.17 7.11 99.48 0.71 -6.47 15 15 H -0.26 -7.26 7.11 99.48 0.71 -6.55 15 16 H -0.25 -7.16 7.11 99.48 0.71 -6.45 15 17 S 0.15 7.12 19.76 -56.49 -1.12 6.00 15 18 C -0.26 -11.57 6.34 23.22 0.15 -11.43 15 19 C 0.01 0.27 6.18 23.17 0.14 0.41 15 20 S -0.15 -5.54 24.41 -56.49 -1.38 -6.91 15 21 H 0.16 3.74 8.06 -2.91 -0.02 3.71 15 22 H 0.15 4.08 8.06 -2.91 -0.02 4.06 15 23 H 0.12 4.99 8.06 -2.91 -0.02 4.97 15 24 H 0.32 11.79 8.29 -92.71 -0.77 11.02 15 25 H 0.09 3.04 9.07 73.35 0.67 3.70 15 Total: -1.00 -50.38 262.62 4.83 -45.55 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: 1.92 Total: 12.56 kcal Atomic # 6 Polarization: -41.41 SS G_CDS: 2.79 Total: -38.62 kcal Atomic # 7 Polarization: -50.70 SS G_CDS: 0.58 Total: -50.12 kcal Atomic # 14 Polarization: 29.51 SS G_CDS: 2.03 Total: 31.54 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -2.49 Total: -0.91 kcal Total: -50.38 4.83 -45.55 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396219057.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.367 kcal (2) G-P(sol) polarization free energy of solvation -50.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds