Wall clock time and date at job start Mon Mar 30 2020 07:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.40417 * 120.44500 * 322.80207 * 3 2 1 5 5 S 1.76032 * 130.24840 * 0.02823 * 4 3 2 6 6 C 1.75474 * 91.56374 * 180.02562 * 5 4 3 7 7 S 1.76202 * 124.68590 * 180.02562 * 6 5 4 8 8 C 1.34009 * 110.62789 * 359.97438 * 6 5 4 9 9 C 1.40080 * 115.72188 * 359.97438 * 8 6 5 10 10 C 1.42230 * 128.08670 * 180.02562 * 9 8 6 11 11 C 1.34942 * 121.95250 * 179.97438 * 10 9 8 12 12 C 1.41326 * 120.56190 * 0.27376 * 11 10 9 13 13 C 1.40164 * 120.60375 * 179.70040 * 12 11 10 14 14 H 1.08008 * 120.00409 * 204.78530 * 13 12 11 15 15 C 1.40076 * 120.00217 * 24.78466 * 13 12 11 16 16 N 1.30791 * 119.99497 * 17.58861 * 15 13 12 17 17 Si 1.86797 * 120.00669 * 197.59126 * 15 13 12 18 18 H 1.48504 * 109.47159 * 89.99390 * 17 15 13 19 19 H 1.48498 * 109.47390 * 209.99893 * 17 15 13 20 20 H 1.48503 * 109.46843 * 329.99998 * 17 15 13 21 21 H 1.41001 * 99.99768 * 269.99775 * 7 6 5 22 22 H 1.08001 * 122.13730 * 179.97438 * 8 6 5 23 23 H 1.08000 * 119.02630 * 0.02562 * 10 9 8 24 24 H 1.08000 * 119.71729 * 180.02562 * 11 10 9 25 25 H 0.97002 * 119.99509 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2800 -0.9633 0.7319 5 16 2.6986 -2.2873 1.7357 6 6 4.3384 -2.7837 2.1147 7 16 4.7598 -4.1467 3.1488 8 6 5.2260 -1.9836 1.5081 9 6 4.6832 -0.9559 0.7263 10 6 5.3752 0.0337 -0.0253 11 6 4.7223 0.9731 -0.7409 12 6 3.3096 1.0075 -0.7620 13 6 2.6306 1.9868 -1.4999 14 1 1.6272 2.2737 -1.2218 15 6 3.2534 2.5935 -2.5982 16 7 4.2989 2.0329 -3.1490 17 14 2.5908 4.2030 -3.2762 18 1 3.2533 5.3401 -2.5881 19 1 2.8670 4.2774 -4.7334 20 1 1.1253 4.2711 -3.0461 21 1 4.8166 -3.4972 4.3990 22 1 6.2917 -2.1224 1.6153 23 1 6.4552 0.0327 -0.0239 24 1 5.2842 1.7074 -1.2990 25 1 4.7304 2.4533 -3.9093 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396219551.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:30:11 Heat of formation + Delta-G solvation = 53.444099 kcal Electronic energy + Delta-G solvation = -13901.743384 eV Core-core repulsion = 11483.131203 eV Total energy + Delta-G solvation = -2418.612181 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.44860 -35.74247 -35.10121 -33.13799 -30.26335 -29.27807 -25.87611 -23.15796 -22.30020 -20.23812 -18.67754 -17.43476 -16.81411 -15.95661 -15.51795 -14.73978 -14.11145 -13.87364 -13.45941 -13.17585 -12.80327 -12.26223 -12.06343 -11.94563 -11.87041 -11.53043 -11.45104 -11.04168 -10.89719 -10.73873 -10.31611 -10.05630 -9.82743 -9.54134 -8.71198 -7.83963 -7.77282 -7.60267 -6.99193 -5.07009 1.29186 1.95173 2.03350 2.41280 2.59904 2.71375 2.74412 2.77747 2.92048 3.19990 3.42409 3.81598 3.99711 4.22461 5.09506 5.23412 5.80646 5.93339 6.10065 6.30096 6.38930 6.50120 6.61921 6.79536 7.19364 7.25540 7.38755 7.47087 7.82199 7.99629 8.16894 8.71401 9.29432 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.035172 B = 0.005854 C = 0.005093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.891621 B = 4782.006556 C = 5496.106751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C 0.295 3.705 3 C -0.185 4.185 4 C 0.003 3.997 5 S 0.057 5.943 6 C -0.281 4.281 7 S -0.096 6.096 8 C 0.003 3.997 9 C -0.217 4.217 10 C -0.042 4.042 11 C -0.143 4.143 12 C 0.166 3.834 13 C -0.383 4.383 14 H 0.097 0.903 15 C 0.068 3.932 16 N -0.736 5.736 17 Si 0.925 3.075 18 H -0.257 1.257 19 H -0.268 1.268 20 H -0.253 1.253 21 H 0.074 0.926 22 H 0.132 0.868 23 H 0.104 0.896 24 H 0.133 0.867 25 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.408 -0.199 2.413 5.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.178 5.178 2 C -0.015 4.015 3 C -0.199 4.199 4 C -0.117 4.117 5 S 0.319 5.681 6 C -0.508 4.508 7 S 0.059 5.941 8 C -0.031 4.031 9 C -0.224 4.224 10 C -0.063 4.063 11 C -0.162 4.162 12 C 0.157 3.843 13 C -0.409 4.409 14 H 0.115 0.885 15 C -0.159 4.159 16 N -0.355 5.355 17 Si 0.747 3.253 18 H -0.181 1.181 19 H -0.192 1.192 20 H -0.176 1.176 21 H 0.039 0.961 22 H 0.150 0.850 23 H 0.122 0.878 24 H 0.151 0.849 25 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.701 -1.699 3.039 4.406 hybrid contribution 1.428 2.356 -0.581 2.815 sum 4.128 0.657 2.457 4.849 Atomic orbital electron populations 1.81031 1.12387 1.11179 1.13222 1.25552 0.92469 0.91909 0.91550 1.15904 0.83143 1.03815 1.17083 1.22414 0.96073 0.95970 0.97292 1.84066 1.07132 1.27354 1.49582 1.24087 0.98223 1.10188 1.18284 1.86328 1.91199 1.11580 1.05035 1.20322 0.99101 0.91270 0.92358 1.17563 0.91143 1.03225 1.10462 1.20385 0.97986 0.93215 0.94705 1.20868 0.93754 1.00566 1.00990 1.18396 0.91574 0.87348 0.86939 1.20004 1.01729 1.12551 1.06568 0.88492 1.26338 0.93935 0.99556 0.96049 1.69761 1.14539 1.35472 1.15771 0.85965 0.81268 0.79467 0.78633 1.18106 1.19214 1.17629 0.96119 0.85037 0.87782 0.84940 0.88853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -12.07 18.54 41.84 0.78 -11.30 15 2 C 0.29 6.99 14.02 -22.47 -0.31 6.67 15 3 C -0.18 -4.26 5.97 -103.85 -0.62 -4.88 15 4 C 0.00 0.06 6.33 -37.98 -0.24 -0.18 15 5 S 0.06 1.15 22.97 -107.50 -2.47 -1.32 15 6 C -0.28 -5.17 6.71 29.24 0.20 -4.98 15 7 S -0.10 -1.48 26.17 -107.50 -2.81 -4.30 15 8 C 0.00 0.05 10.05 -40.38 -0.41 -0.36 15 9 C -0.22 -4.38 5.87 -106.89 -0.63 -5.01 15 10 C -0.04 -0.80 9.92 -39.22 -0.39 -1.19 15 11 C -0.14 -2.97 8.58 -39.58 -0.34 -3.31 15 12 C 0.17 3.76 5.73 -104.70 -0.60 3.16 15 13 C -0.38 -8.47 8.54 -38.17 -0.33 -8.79 15 14 H 0.10 2.17 7.37 -52.48 -0.39 1.78 15 15 C 0.07 1.36 5.14 -17.31 -0.09 1.28 15 16 N -0.74 -14.82 10.96 55.56 0.61 -14.21 15 17 Si 0.92 15.13 29.60 -169.99 -5.03 10.10 15 18 H -0.26 -4.09 7.11 56.52 0.40 -3.69 15 19 H -0.27 -4.25 7.11 56.52 0.40 -3.84 15 20 H -0.25 -4.31 7.11 56.52 0.40 -3.90 15 21 H 0.07 1.04 9.55 96.90 0.93 1.97 15 22 H 0.13 2.02 8.06 -52.49 -0.42 1.60 15 23 H 0.10 1.69 8.06 -52.49 -0.42 1.26 15 24 H 0.13 2.69 6.17 -52.49 -0.32 2.36 15 25 H 0.30 5.29 8.29 -40.82 -0.34 4.95 15 LS Contribution 263.90 15.07 3.98 3.98 Total: -1.00 -23.66 263.90 -8.47 -32.14 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: 0.24 Total: 2.50 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: -3.75 Total: -17.58 kcal Atomic # 7 Polarization: -26.89 SS G_CDS: 1.38 Total: -25.51 kcal Atomic # 14 Polarization: 15.13 SS G_CDS: -5.03 Total: 10.10 kcal Atomic # 16 Polarization: -0.33 SS G_CDS: -5.28 Total: -5.62 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -23.66 -8.47 -32.14 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396219551.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.580 kcal (2) G-P(sol) polarization free energy of solvation -23.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds