Wall clock time and date at job start Mon Mar 30 2020 07:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.40417 * 120.44500 * 322.80207 * 3 2 1 5 5 S 1.76032 * 130.24840 * 0.02823 * 4 3 2 6 6 C 1.75474 * 91.56374 * 180.02562 * 5 4 3 7 7 S 1.76202 * 124.68590 * 180.02562 * 6 5 4 8 8 C 1.34009 * 110.62789 * 359.97438 * 6 5 4 9 9 C 1.40080 * 115.72188 * 359.97438 * 8 6 5 10 10 C 1.42230 * 128.08670 * 180.02562 * 9 8 6 11 11 C 1.34942 * 121.95250 * 179.97438 * 10 9 8 12 12 C 1.41326 * 120.56190 * 0.27376 * 11 10 9 13 13 C 1.40164 * 120.60375 * 179.70040 * 12 11 10 14 14 H 1.08008 * 120.00409 * 204.78530 * 13 12 11 15 15 C 1.40076 * 120.00217 * 24.78466 * 13 12 11 16 16 N 1.30791 * 119.99497 * 17.58861 * 15 13 12 17 17 Si 1.86797 * 120.00669 * 197.59126 * 15 13 12 18 18 H 1.48504 * 109.47159 * 89.99390 * 17 15 13 19 19 H 1.48498 * 109.47390 * 209.99893 * 17 15 13 20 20 H 1.48503 * 109.46843 * 329.99998 * 17 15 13 21 21 H 1.41001 * 99.99768 * 269.99775 * 7 6 5 22 22 H 1.08001 * 122.13730 * 179.97438 * 8 6 5 23 23 H 1.08000 * 119.02630 * 0.02562 * 10 9 8 24 24 H 1.08000 * 119.71729 * 180.02562 * 11 10 9 25 25 H 0.97002 * 119.99509 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2800 -0.9633 0.7319 5 16 2.6986 -2.2873 1.7357 6 6 4.3384 -2.7837 2.1147 7 16 4.7598 -4.1467 3.1488 8 6 5.2260 -1.9836 1.5081 9 6 4.6832 -0.9559 0.7263 10 6 5.3752 0.0337 -0.0253 11 6 4.7223 0.9731 -0.7409 12 6 3.3096 1.0075 -0.7620 13 6 2.6306 1.9868 -1.4999 14 1 1.6272 2.2737 -1.2218 15 6 3.2534 2.5935 -2.5982 16 7 4.2989 2.0329 -3.1490 17 14 2.5908 4.2030 -3.2762 18 1 3.2533 5.3401 -2.5881 19 1 2.8670 4.2774 -4.7334 20 1 1.1253 4.2711 -3.0461 21 1 4.8166 -3.4972 4.3990 22 1 6.2917 -2.1224 1.6153 23 1 6.4552 0.0327 -0.0239 24 1 5.2842 1.7074 -1.2990 25 1 4.7304 2.4533 -3.9093 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396219551.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:30:11 Heat of formation + Delta-G solvation = 43.589089 kcal Electronic energy + Delta-G solvation = -13902.170730 eV Core-core repulsion = 11483.131203 eV Total energy + Delta-G solvation = -2419.039526 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -40.02719 -37.41989 -36.78721 -34.68239 -31.88153 -30.85527 -27.45397 -24.76077 -23.87073 -21.76092 -20.26589 -19.00379 -18.23352 -17.50656 -16.95335 -16.24748 -15.67643 -15.35542 -15.01021 -14.80057 -14.24239 -13.91909 -13.78767 -13.64038 -13.34502 -13.07968 -12.92315 -12.55878 -12.32258 -12.20146 -11.84563 -11.49305 -11.39270 -11.03255 -10.30780 -9.35460 -9.14030 -9.05691 -8.57649 -6.72716 -0.16212 0.33349 0.52758 0.97172 1.18769 1.22526 1.35966 1.49945 1.55977 1.85294 1.97842 2.08262 2.40327 2.50835 3.42711 3.54084 4.28297 4.52361 4.59448 4.74953 4.83726 4.96245 5.03524 5.23627 5.63499 5.65633 5.80860 5.87384 6.21739 6.38161 6.56268 6.89594 7.82953 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.035172 B = 0.005854 C = 0.005093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.891621 B = 4782.006556 C = 5496.106751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C 0.298 3.702 3 C -0.218 4.218 4 C -0.018 4.018 5 S 0.037 5.963 6 C -0.278 4.278 7 S -0.073 6.073 8 C 0.003 3.997 9 C -0.220 4.220 10 C -0.033 4.033 11 C -0.155 4.155 12 C 0.148 3.852 13 C -0.410 4.410 14 H 0.081 0.919 15 C 0.043 3.957 16 N -0.752 5.752 17 Si 0.986 3.014 18 H -0.246 1.246 19 H -0.254 1.254 20 H -0.269 1.269 21 H 0.095 0.905 22 H 0.168 0.832 23 H 0.141 0.859 24 H 0.136 0.864 25 H 0.313 0.687 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.564 -0.451 2.744 8.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.206 5.206 2 C -0.010 4.010 3 C -0.233 4.233 4 C -0.138 4.138 5 S 0.298 5.702 6 C -0.504 4.504 7 S 0.081 5.919 8 C -0.029 4.029 9 C -0.228 4.228 10 C -0.054 4.054 11 C -0.174 4.174 12 C 0.140 3.860 13 C -0.435 4.435 14 H 0.099 0.901 15 C -0.183 4.183 16 N -0.372 5.372 17 Si 0.805 3.195 18 H -0.170 1.170 19 H -0.177 1.177 20 H -0.193 1.193 21 H 0.059 0.941 22 H 0.185 0.815 23 H 0.159 0.841 24 H 0.154 0.846 25 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.870 -1.962 3.369 6.238 hybrid contribution 0.856 2.261 -0.549 2.480 sum 5.726 0.300 2.819 6.390 Atomic orbital electron populations 1.80987 1.12894 1.12239 1.14514 1.25863 0.92832 0.91315 0.91000 1.16119 0.82767 1.05300 1.19095 1.22636 0.97102 0.96303 0.97782 1.84137 1.09415 1.27123 1.49491 1.24444 0.96898 1.10733 1.18330 1.86276 1.90425 1.09963 1.05259 1.20599 1.00794 0.90191 0.91358 1.17948 0.90557 1.03839 1.10429 1.20723 0.99786 0.91833 0.93049 1.20927 0.92964 1.01526 1.01963 1.18689 0.92696 0.87463 0.87169 1.20098 1.01556 1.13828 1.08038 0.90093 1.26933 0.94077 1.01799 0.95447 1.69721 1.14862 1.36407 1.16210 0.85090 0.79573 0.76092 0.78727 1.16957 1.17731 1.19305 0.94061 0.81516 0.84081 0.84599 0.87451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -26.52 18.54 19.01 0.35 -26.17 15 2 C 0.30 14.75 14.02 88.33 1.24 15.99 15 3 C -0.22 -10.38 5.97 -19.37 -0.12 -10.50 15 4 C -0.02 -0.79 6.33 23.31 0.15 -0.64 15 5 S 0.04 1.48 22.97 -56.49 -1.30 0.19 15 6 C -0.28 -9.52 6.71 66.86 0.45 -9.07 15 7 S -0.07 -2.02 26.17 -56.49 -1.48 -3.50 15 8 C 0.00 0.10 10.05 21.75 0.22 0.32 15 9 C -0.22 -8.54 5.87 -21.33 -0.13 -8.66 15 10 C -0.03 -1.22 9.92 22.50 0.22 -0.99 15 11 C -0.15 -6.38 8.58 22.27 0.19 -6.19 15 12 C 0.15 6.88 5.73 -19.92 -0.11 6.76 15 13 C -0.41 -18.72 8.54 23.18 0.20 -18.52 15 14 H 0.08 3.83 7.37 -2.91 -0.02 3.81 15 15 C 0.04 1.72 5.14 85.29 0.44 2.16 15 16 N -0.75 -29.86 10.96 21.85 0.24 -29.62 15 17 Si 0.99 30.59 29.60 68.60 2.03 32.62 15 18 H -0.25 -7.16 7.11 99.48 0.71 -6.46 15 19 H -0.25 -7.25 7.11 99.48 0.71 -6.54 15 20 H -0.27 -8.94 7.11 99.48 0.71 -8.24 15 21 H 0.09 2.29 9.55 73.80 0.70 3.00 15 22 H 0.17 4.34 8.06 -2.91 -0.02 4.32 15 23 H 0.14 4.05 8.06 -2.91 -0.02 4.03 15 24 H 0.14 5.43 6.17 -2.91 -0.02 5.41 15 25 H 0.31 10.66 8.29 -92.71 -0.77 9.89 15 Total: -1.00 -51.16 263.90 4.57 -46.60 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: 1.97 Total: 9.23 kcal Atomic # 6 Polarization: -32.09 SS G_CDS: 2.75 Total: -29.34 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: 0.59 Total: -55.79 kcal Atomic # 14 Polarization: 30.59 SS G_CDS: 2.03 Total: 32.62 kcal Atomic # 16 Polarization: -0.54 SS G_CDS: -2.78 Total: -3.32 kcal Total: -51.16 4.57 -46.60 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396219551.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.186 kcal (2) G-P(sol) polarization free energy of solvation -51.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds