Wall clock time and date at job start Mon Mar 30 2020 07:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.36398 * 123.12198 * 233.35576 * 3 2 1 5 5 S 1.76206 * 124.54448 * 359.73610 * 4 3 2 6 6 S 1.75199 * 110.91040 * 180.02562 * 4 3 2 7 7 C 1.75859 * 92.63837 * 0.02562 * 6 4 3 8 8 C 1.39000 * 110.55814 * 359.97438 * 7 6 4 9 9 C 1.41006 * 119.16810 * 179.97438 * 8 7 6 10 10 C 1.37979 * 120.99352 * 0.03824 * 9 8 7 11 11 C 1.37734 * 120.60065 * 359.96044 * 10 9 8 12 12 C 1.40448 * 119.81665 * 0.02562 * 11 10 9 13 13 C 1.40986 * 120.05515 * 179.97438 * 12 11 10 14 14 H 1.08006 * 120.00062 * 205.01585 * 13 12 11 15 15 C 1.39926 * 119.99825 * 25.00627 * 13 12 11 16 16 N 1.30866 * 120.00233 * 17.89175 * 15 13 12 17 17 Si 1.86805 * 119.99839 * 197.88644 * 15 13 12 18 18 H 1.48505 * 109.46915 * 90.00756 * 17 15 13 19 19 H 1.48501 * 109.46967 * 210.00131 * 17 15 13 20 20 H 1.48492 * 109.47381 * 330.00461 * 17 15 13 21 21 H 1.41006 * 99.99619 * 90.00298 * 5 4 3 22 22 H 1.08000 * 119.50575 * 179.97438 * 9 8 7 23 23 H 1.07992 * 119.70062 * 180.02562 * 10 9 8 24 24 H 1.07995 * 120.08935 * 179.97438 * 11 10 9 25 25 H 0.96996 * 120.00599 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3130 0.6828 0.9166 5 16 2.6430 1.6606 2.2203 6 16 5.0255 0.4629 0.6188 7 6 4.7335 -0.5713 -0.7732 8 6 3.3690 -0.7306 -0.9853 9 6 2.9294 -1.5294 -2.0609 10 6 3.8316 -2.1512 -2.8994 11 6 5.1871 -2.0040 -2.7037 12 6 5.6577 -1.2149 -1.6415 13 6 7.0441 -1.0612 -1.4363 14 1 7.4213 -0.8231 -0.4527 15 6 7.9313 -1.2175 -2.5070 16 7 7.4895 -1.1561 -3.7373 17 14 9.7466 -1.5134 -2.1801 18 1 10.0000 -2.9733 -2.0807 19 1 10.5489 -0.9465 -3.2937 20 1 10.1338 -0.8559 -0.9063 21 1 2.5452 0.6844 3.2331 22 1 1.8704 -1.6572 -2.2304 23 1 3.4719 -2.7579 -3.7171 24 1 5.8860 -2.4948 -3.3648 25 1 8.1046 -1.2640 -4.4795 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396219770.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:53 Heat of formation + Delta-G solvation = 61.586458 kcal Electronic energy + Delta-G solvation = -13929.559214 eV Core-core repulsion = 11511.300112 eV Total energy + Delta-G solvation = -2418.259102 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -38.43658 -36.40566 -34.66837 -33.22243 -30.23373 -28.47428 -25.83552 -24.02514 -21.63403 -20.93253 -18.50991 -17.23251 -16.75226 -15.96764 -15.23888 -14.87130 -14.45550 -13.81745 -13.70771 -13.13459 -12.91434 -12.52699 -12.31654 -12.21472 -11.67451 -11.37145 -11.34679 -11.13302 -10.81788 -10.59230 -10.28238 -9.99079 -9.63919 -9.47518 -8.54693 -8.10084 -7.65650 -7.16064 -6.99929 -4.66951 0.69564 1.57281 2.11053 2.40078 2.55279 2.64189 2.79641 2.92084 2.95328 3.00263 3.09173 3.69875 3.79879 4.33735 4.43850 5.23280 5.51161 5.92450 6.15017 6.24061 6.60196 6.78336 6.84323 7.02425 7.27825 7.54533 7.70702 7.82172 7.83464 8.22466 8.44709 8.50657 9.82915 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.027195 B = 0.006852 C = 0.005567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.337529 B = 4085.331586 C = 5028.476563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C 0.286 3.714 3 C 0.015 3.985 4 C -0.172 4.172 5 S -0.088 6.088 6 S 0.164 5.836 7 C -0.209 4.209 8 C -0.022 4.022 9 C -0.216 4.216 10 C -0.075 4.075 11 C -0.165 4.165 12 C 0.146 3.854 13 C -0.449 4.449 14 H 0.084 0.916 15 C 0.078 3.922 16 N -0.773 5.773 17 Si 0.913 3.087 18 H -0.264 1.264 19 H -0.274 1.274 20 H -0.258 1.258 21 H 0.098 0.902 22 H 0.094 0.906 23 H 0.100 0.900 24 H 0.128 0.872 25 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.335 0.820 4.872 4.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.104 5.104 2 C -0.030 4.030 3 C -0.011 4.011 4 C -0.405 4.405 5 S 0.067 5.933 6 S 0.433 5.567 7 C -0.327 4.327 8 C -0.030 4.030 9 C -0.239 4.239 10 C -0.094 4.094 11 C -0.188 4.188 12 C 0.140 3.860 13 C -0.477 4.477 14 H 0.102 0.898 15 C -0.143 4.143 16 N -0.396 5.396 17 Si 0.736 3.264 18 H -0.189 1.189 19 H -0.199 1.199 20 H -0.182 1.182 21 H 0.063 0.937 22 H 0.113 0.887 23 H 0.118 0.882 24 H 0.146 0.854 25 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.305 2.121 5.945 6.320 hybrid contribution 0.311 -1.852 -0.883 2.075 sum 0.006 0.269 5.062 5.069 Atomic orbital electron populations 1.81117 1.11669 1.09096 1.08558 1.25027 0.91893 0.93050 0.93062 1.16731 0.84675 1.01527 0.98122 1.25520 1.01902 1.08843 1.04273 1.86695 1.82612 1.15318 1.08716 1.83738 0.98267 1.48149 1.26543 1.22613 0.95614 1.09143 1.05308 1.18248 0.90352 0.98847 0.95594 1.20084 0.97669 1.07084 0.99025 1.20558 0.93813 0.97925 0.97117 1.21185 0.93885 1.02243 1.01527 1.17009 0.91649 0.88089 0.89283 1.19584 0.90712 1.41015 0.96419 0.89763 1.25949 1.02204 0.91893 0.94286 1.69810 1.38413 1.31675 0.99726 0.86210 0.80593 0.79917 0.79664 1.18878 1.19916 1.18203 0.93736 0.88739 0.88183 0.85433 0.90111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -8.23 18.54 41.84 0.78 -7.45 15 2 C 0.29 5.40 14.77 -22.47 -0.33 5.06 15 3 C 0.02 0.29 5.90 -105.29 -0.62 -0.33 15 4 C -0.17 -3.05 6.75 30.07 0.20 -2.85 15 5 S -0.09 -1.30 25.56 -107.50 -2.75 -4.04 15 6 S 0.16 3.06 22.70 -107.50 -2.44 0.62 15 7 C -0.21 -4.62 6.33 -37.78 -0.24 -4.86 15 8 C -0.02 -0.48 6.00 -105.22 -0.63 -1.11 15 9 C -0.22 -4.54 9.83 -38.63 -0.38 -4.92 15 10 C -0.07 -1.58 9.98 -39.86 -0.40 -1.98 15 11 C -0.16 -3.80 8.67 -38.93 -0.34 -4.14 15 12 C 0.15 3.45 5.59 -106.50 -0.60 2.85 15 13 C -0.45 -10.47 8.80 -37.91 -0.33 -10.81 15 14 H 0.08 1.89 7.70 -52.48 -0.40 1.48 15 15 C 0.08 1.72 5.12 -17.33 -0.09 1.64 15 16 N -0.77 -17.68 10.98 55.55 0.61 -17.07 15 17 Si 0.91 16.61 29.60 -169.99 -5.03 11.58 15 18 H -0.26 -4.76 7.11 56.52 0.40 -4.36 15 19 H -0.27 -4.91 7.11 56.52 0.40 -4.51 15 20 H -0.26 -4.68 7.11 56.52 0.40 -4.28 15 21 H 0.10 1.25 9.55 96.90 0.93 2.17 15 22 H 0.09 1.85 8.02 -52.49 -0.42 1.43 15 23 H 0.10 1.84 8.06 -52.49 -0.42 1.41 15 24 H 0.13 2.99 6.17 -52.49 -0.32 2.67 15 25 H 0.29 5.94 8.30 -40.82 -0.34 5.60 15 LS Contribution 264.24 15.07 3.98 3.98 Total: -1.00 -23.83 264.24 -8.39 -32.22 By element: Atomic # 1 Polarization: 1.39 SS G_CDS: 0.22 Total: 1.61 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: -3.75 Total: -21.44 kcal Atomic # 7 Polarization: -25.91 SS G_CDS: 1.39 Total: -24.52 kcal Atomic # 14 Polarization: 16.61 SS G_CDS: -5.03 Total: 11.58 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -5.19 Total: -3.43 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -23.83 -8.39 -32.22 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396219770.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.806 kcal (2) G-P(sol) polarization free energy of solvation -23.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds